ggtreeSpace
Visualizing Phylomorphospaces using 'ggtree'
Bioconductor version: 3.23 · Package version: 1.8.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeSpace")Details
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| Author | Guangchuang Yu [aut, cre, ths, cph] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Li Lin [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/YuLab-SMU/ggtreeSpace |
| Bug Reports | https://github.com/YuLab-SMU/ggtreeSpace/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Phylogenetics, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ggtreeSpace/ |
Citation
From within R, enter citation("ggtreeSpace"):
Guangchuang Yu. ggtreeSpace: Visualizing Phylomorphospaces using 'ggtree'. doi:10.18129/B9.bioc.ggtreeSpace, R package version 1.8.0, https://bioconductor.org/packages/ggtreeSpace.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggtreeSpace_1.8.0.tar.gz |
| Windows binary (x86_64) | ggtreeSpace_1.8.0.zip |
| macOS binary (arm64) | ggtreeSpace_1.8.0.tgz |
| macOS binary (x86_64) | ggtreeSpace_1.8.0.tgz |