kissDE
Retrieves Condition-Specific Variants in RNA-Seq Data
Bioconductor version: Release (3.19)
Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurélie Siberchicot [aut, cre], Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]
Maintainer: Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>
citation("kissDE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("kissDE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("kissDE")
kissDE.pdf | R Script | |
Reference Manual |
Details
biocViews | AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics |
Version | 1.24.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | aods3, Biobase, DESeq2, DSS, ggplot2, gplots, graphics, grDevices, matrixStats, stats, utils, foreach, doParallel, parallel, shiny, shinycssloaders, ade4, factoextra, DT |
System Requirements | |
URL | https://github.com/lbbe-software/kissDE |
See More
Suggests | BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | kissDE_1.24.0.tar.gz |
Windows Binary | kissDE_1.24.0.zip (64-bit only) |
macOS Binary (x86_64) | kissDE_1.24.0.tgz |
macOS Binary (arm64) | kissDE_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/kissDE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/kissDE |
Bioc Package Browser | https://code.bioconductor.org/browse/kissDE/ |
Package Short Url | https://bioconductor.org/packages/kissDE/ |
Package Downloads Report | Download Stats |