kissDE

DOI: 10.18129/B9.bioc.kissDE    

Retrieves Condition-Specific Variants in RNA-Seq Data

Bioconductor version: Release (3.7)

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurélie Siberchicot [aut, cre], Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]

Maintainer: Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>

Citation (from within R, enter citation("kissDE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("kissDE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("kissDE")

 

PDF R Script kissDE.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics
Version 1.0.0
License GPL (>= 2)
Depends
Imports aod, Biobase, DESeq2, DSS, ggplot2, glmnet, gplots, graphics, grDevices, matrixStats, R.utils, stats, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package kissDE_1.0.0.tar.gz
Windows Binary kissDE_1.0.0.zip
Mac OS X 10.11 (El Capitan) kissDE_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/kissDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/kissDE
Package Short Url http://bioconductor.org/packages/kissDE/
Package Downloads Report Download Stats

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