leapR
Layered enrichment analysis of pathways R
Bioconductor version: 3.23 · Package version: 1.0.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
leapR is a package that identifies pathways that are enriched across diverse 'omics experiments. It leverages any tabular expression data (proteomics, transcriptomics) using the `SummarizedExperiment` object. It works with any pathway in the .gct file format.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("leapR")Details
| Maintainer | Sara Gosline <sara.gosline@pnnl.gov> |
| Author | Sara Gosline [aut, cre] (ORCID: <https://orcid.org/0000-0002-6534-4774>), Jason McDermott [aut], Jeremy Jacobson [aut], Vincent Danna [ctb], National Institutes of Health [fnd] |
| License | MIT + file LICENSE |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, GeneSetEnrichment, Pathways, Proteomics, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/leapR/ |
Citation
From within R, enter citation("leapR"):
Sara Gosline, Jason McDermott, Jeremy Jacobson. leapR: Layered enrichment analysis of pathways R. doi:10.18129/B9.bioc.leapR, R package version 1.0.0, https://bioconductor.org/packages/leapR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | leapR_1.0.0.tar.gz |
| macOS binary (arm64) | leapR_1.0.0.tgz |
| macOS binary (x86_64) | leapR_1.0.0.tgz |