mdgsa

DOI: 10.18129/B9.bioc.mdgsa    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Multi Dimensional Gene Set Analysis.

Bioconductor version: Release (3.13)

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

Author: David Montaner <dmontaner at cipf.es>

Maintainer: David Montaner <dmontaner at cipf.es>

Citation (from within R, enter citation("mdgsa")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mdgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 1.24.0
In Bioconductor since BioC 3.1 (R-3.2) (6.5 years)
License GPL
Depends R (>= 2.14)
Imports AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL https://github.com/dmontaner/mdgsa http://www.dmontaner.com
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/mdgsa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mdgsa
Package Short Url https://bioconductor.org/packages/mdgsa/
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