DOI: 10.18129/B9.bioc.methyAnalysis    

DNA methylation data analysis and visualization

Bioconductor version: Release (3.6)

The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.

Author: Pan Du, Richard Bourgon

Maintainer: Pan Du <dupan.mail at>, Lei Huang <lhuang at>, Gang Feng <g-feng at>

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PDF R Script An Introduction to the methyAnalysis package
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Microarray, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 2.11 (R-2.15) (5.5 years)
License Artistic-2.0
Depends R (>= 2.10), grid, BiocGenerics, IRanges, GenomeInfoDb, GenomicRanges, Biobase(>= 2.34.0),
Imports grDevices, stats, utils, lumi, methylumi, Gviz, genoset, SummarizedExperiment, IRanges, GenomicRanges, VariantAnnotation, rtracklayer, GenomicFeatures, annotate, Biobase(>= 2.5.5), AnnotationDbi, genefilter, biomaRt, methods, parallel
Suggests FDb.InfiniumMethylation.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
Depends On Me
Imports Me
Suggests Me methylumi
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