To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("miRNAtap")

In most cases, you don't need to download the package archive at all.

miRNAtap

 

   

miRNAtap: microRNA Targets - Aggregated Predictions

Bioconductor version: Release (3.5)

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: Maciej Pajak <m.pajak at sms.ed.ac.uk>

Citation (from within R, enter citation("miRNAtap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("miRNAtap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNAtap")

 

PDF R Script miRNAtap
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Microarray, Sequencing, Software, miRNA
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (2.5 years)
License GPL-2
Depends R (>= 3.3.0), AnnotationDbi
Imports DBI, RSQLite, stringr, sqldf, plyr, methods
LinkingTo
Suggests topGO, org.Hs.eg.db, miRNAtap.db, testthat
SystemRequirements
Enhances
URL
Depends On Me miRNAtap.db
Imports Me miRNAtap.db, SpidermiR
Suggests Me oneChannelGUI
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source miRNAtap_1.10.0.tar.gz
Windows Binary miRNAtap_1.10.0.zip
Mac OS X 10.11 (El Capitan) miRNAtap_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/miRNAtap/tree/release-3.5
Package Short Url http://bioconductor.org/packages/miRNAtap/
Package Downloads Report Download Stats

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