microbiomeDASim
Microbiome Differential Abundance Simulation
Bioconductor version: Release (3.19)
A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.
Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
Maintainer: Justin Williams <williazo at ucla.edu>
citation("microbiomeDASim")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiomeDASim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiomeDASim")
microbiomeDASim | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Microbiome, Software, Visualization |
Version | 1.18.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6.0) |
Imports | graphics, ggplot2, MASS, tmvtnorm, Matrix, mvtnorm, pbapply, stats, phyloseq, metagenomeSeq, Biobase |
System Requirements | |
URL | https://github.com/williazo/microbiomeDASim |
Bug Reports | https://github.com/williazo/microbiomeDASim/issues |
See More
Suggests | testthat (>= 2.1.0), knitr, devtools |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | microbiomeDASim_1.18.0.tar.gz |
Windows Binary | microbiomeDASim_1.18.0.zip |
macOS Binary (x86_64) | microbiomeDASim_1.18.0.tgz |
macOS Binary (arm64) | microbiomeDASim_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/microbiomeDASim |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiomeDASim |
Bioc Package Browser | https://code.bioconductor.org/browse/microbiomeDASim/ |
Package Short Url | https://bioconductor.org/packages/microbiomeDASim/ |
Package Downloads Report | Download Stats |