nudge

DOI: 10.18129/B9.bioc.nudge    

Normal Uniform Differential Gene Expression detection

Bioconductor version: Release (3.7)

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Citation (from within R, enter citation("nudge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nudge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")

 

PDF R Script nudge Overview
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software, TwoChannel
Version 1.46.0
In Bioconductor since BioC 1.8 (R-2.3) (12.5 years)
License GPL-2
Depends
Imports stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nudge_1.46.0.tar.gz
Windows Binary nudge_1.46.0.zip
Mac OS X 10.11 (El Capitan) nudge_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nudge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nudge
Package Short Url http://bioconductor.org/packages/nudge/
Package Downloads Report Download Stats

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