sfi
Data analysis for Single File Injections (SFIs) mode LC-MS analysis
Bioconductor version: 3.23 · Package version: 1.0.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Data analysis for Single File Injections(SFIs) mode LC-MS analysis. In SFIs mode, pooled samples are initially injected to serve as reference peaks for subsequent analyses. Repeated injections of individual samples are then performed at fixed time intervals using isocratic elution. This package provides the functions to analyze data from SFIs mode including peak picking and peak reassignment.
DOI: 10.18129/B9.bioc.sfi
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sfi")Details
| Maintainer | Miao YU <yufreecas@gmail.com> |
| Author | Miao YU [aut, cre] (ORCID: <https://orcid.org/0000-0002-2804-6014>) |
| License | MIT + file LICENSE |
| URL | https://github.com/yufree/sfi |
| Bug Reports | https://github.com/yufree/sfi/issues/new |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | FeatureExtraction, MassSpectrometry, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/sfi/ |
Citation
From within R, enter citation("sfi"):
Miao YU. sfi: Data analysis for Single File Injections (SFIs) mode LC-MS analysis. doi:10.18129/B9.bioc.sfi, R package version 1.0.0, https://bioconductor.org/packages/sfi.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | sfi_1.0.0.tar.gz |
| Windows binary (x86_64) | sfi_1.0.0.zip |
| macOS binary (arm64) | sfi_1.0.0.tgz |
| macOS binary (x86_64) | sfi_1.0.0.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: Rcpp, enviGCMS, stats, mzR, rmarkdown, methods, SummarizedExperiment, S4Vectors
LinkingTo: Rcpp
Suggests: knitr, data.table, BiocStyle, ggplot2, MsCoreUtils, testthat (>= 3.0.0)