singIST
This is the released version of singIST; for the devel version, see singIST.
All Bioconductor versions of singIST
3.24 (devel), 3.23 (release)
comparative single-cell transcriptomics between disease models and a human condition
Bioconductor version: 3.23 · Package version: 1.0.2
Provides with toolkits to implement a full singIST analysis with pseudobulked Seurat objects of disease models and human data.
Author: Aitor Moruno-Cuenca [aut, cre] 
, Dr. Sergio Picart-Armada [rev] , Dr. Alexandre Perera-Lluna [ths] , Dr. Francesc Fernández-Albert [ths]
Maintainer: Aitor Moruno-Cuenca <morunoaitor at gmail.com>
Citation
From within R, enter citation("singIST"):
Aitor Moruno-Cuenca. singIST: comparative single-cell transcriptomics between disease models and a human condition. doi:10.18129/B9.bioc.singIST, R package version 1.0.2, https://bioconductor.org/packages/singIST.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("singIST")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.0.2 |
| License | MIT + file LICENSE |
| URL | https://github.com/DataScienceRD-Almirall/singIST |
| Bug Reports | https://github.com/DataScienceRD-Almirall/singIST/issues |
| Last updated | 2026-08-20 |
| In Bioconductor since | BioC 3.23 (R-4.6) (less than a year) |
| Downloads rank | 2394 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, SingleCell, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/singIST/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("singIST")| singIST Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | singIST_1.0.2.tar.gz |
| Windows binary (x86_64) | singIST_1.0.2.zip |
| macOS binary (arm64) | singIST_1.0.2.tgz |
| macOS binary (x86_64) | singIST_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/singIST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/singIST |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |
Dependencies
Depends: R (>= 4.5.0)
Imports: msigdb, GSEABase, checkmate, stats, asmbPLS, BiocParallel, stringr, FactoMineR, Seurat, SeuratObject, biomaRt, data.table, purrr, SingleCellExperiment, SummarizedExperiment, scran, scuttle, missMDA, S4Vectors
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, qpdf, utils, RcppAlgos, glmGamPoi, methods, sp