traseR

This is the released version of traseR; for the devel version, see traseR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: Release (3.23)

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Li Chen, Zhaohui S.Qin. traseR: GWAS trait-associated SNP enrichment analyses in genomic intervals. doi:10.18129/B9.bioc.traseR, R package version 1.42.0, https://bioconductor.org/packages/traseR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

Perform GWAS trait-associated SNP enrichment analyses in genomic intervals	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version	1.42.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL
Depends	R (>= 3.5.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
System Requirements
URL

Suggests	BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	traseR_1.42.0.tar.gz
Windows Binary (x86_64)	traseR_1.42.0.zip
macOS Binary (big-sur-x86_64)	traseR_1.42.0.tgz
macOS Binary (sonoma-arm64)	traseR_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/traseR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/traseR
Package Short Url	https://bioconductor.org/packages/traseR/
Package Downloads Report	Download Stats