Welcome to the new bioconductor.org!

vidger

Create rapid visualizations of RNAseq data in R


Bioconductor version: Release (3.18)

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Author: Brandon Monier [aut, cre], Adam McDermaid [aut], Jing Zhao [aut], Qin Ma [aut, fnd]

Maintainer: Brandon Monier <brandon.monier at gmail.com>

Citation (from within R, enter citation("vidger")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vidger")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vidger")
Visualizing RNA-seq data with ViDGER HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-3 | file LICENSE
Depends R (>= 3.5)
Imports Biobase, DESeq2, edgeR, GGally, ggplot2, ggrepel, knitr, RColorBrewer, rmarkdown, scales, stats, SummarizedExperiment, tidyr, utils
System Requirements
URL https://github.com/btmonier/vidger https://bioconductor.org/packages/release/bioc/html/vidger.html
Bug Reports https://github.com/btmonier/vidger/issues
See More
Suggests BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vidger_1.22.0.tar.gz
Windows Binary vidger_1.22.0.zip (64-bit only)
macOS Binary (x86_64) vidger_1.22.0.tgz
macOS Binary (arm64) vidger_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vidger
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vidger
Bioc Package Browser https://code.bioconductor.org/browse/vidger/
Package Short Url https://bioconductor.org/packages/vidger/
Package Downloads Report Download Stats