## ----style, echo = FALSE, results = 'asis', message=FALSE--------------------- BiocStyle::markdown() ## ----load-lib, message = FALSE------------------------------------------------ library(AnnotationHub) ah <- AnnotationHub() ## ----------------------------------------------------------------------------- query(ah, "MassBank") ## ----load-ensdb--------------------------------------------------------------- qr <- query(ah, c("MassBank", "2021.03")) cdb <- qr[[1]] ## ----eval = FALSE------------------------------------------------------------- # library(RMariaDB) # con <- dbConnect(MariaDB(), host = "localhost", user = , # pass = , dbname = "MassBank") # source(system.file("scripts", "massbank_to_compdb.R", package = "CompoundDb")) # massbank_to_compdb(con) ## ----------------------------------------------------------------------------- sessionInfo()