CellScape vignette

CellScape is a visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity.

Installation

To install CellScape, type the following commands in R:

# try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("cellscape")

Examples

Run the examples by:

example("cellscape")

One of these, for example, is copy number data of a triple negative breast cancer patient published in Wang et al. (2014).