MafDb.1Kgenomes.phase1.hs37d5
This is the released version of MafDb.1Kgenomes.phase1.hs37d5; for the devel version, see MafDb.1Kgenomes.phase1.hs37d5.
All Bioconductor versions of MafDb.1Kgenomes.phase1.hs37d5
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5
Bioconductor version: 3.23 · Package version: 3.10.0
Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5.
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation
From within R, enter citation("MafDb.1Kgenomes.phase1.hs37d5"):
Robert Castelo. MafDb.1Kgenomes.phase1.hs37d5: Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5. doi:10.18129/B9.bioc.MafDb.1Kgenomes.phase1.hs37d5, R package version 3.10.0, https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MafDb.1Kgenomes.phase1.hs37d5")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 3.10.0 |
| License | Artistic-2.0 |
| Last updated | 2019-10-23 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 709 of 928 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, GenomicScores, Homo_sapiens |
| Package Short Url | https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MafDb.1Kgenomes.phase1.hs37d5_3.10.0.tar.gz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), GenomicScores (>= 1.9.6)
Imports: utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Suggests Me (2): GenomicScores, VariantFiltering