geneplast.data
Input data for the geneplast package via AnnotationHub
Bioconductor version: 3.23 · Package version: 0.99.9
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneplast.data")Details
| Maintainer | Leonardo Campos <leofields@gmail.com> |
| Author | Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology |
| Package Short Url | https://bioconductor.org/packages/geneplast.data/ |
Citation
From within R, enter citation("geneplast.data"):
Leonardo Campos, Danilo Imparato, Rodrigo Dalmolin, Mauro Castro. geneplast.data: Input data for the geneplast package via AnnotationHub. doi:10.18129/B9.bioc.geneplast.data, R package version 0.99.9, https://bioconductor.org/packages/geneplast.data.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | geneplast.data_0.99.9.tar.gz |
Dependencies
Depends: R (>= 4.0)
Imports: ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache
Suggests: geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
Reverse dependencies
Suggests Me (1): geneplast