GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project
Bioconductor version: Release (3.19)
Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>
Citation (from within R, enter
citation("GeuvadisTranscriptExpr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeuvadisTranscriptExpr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeuvadisTranscriptExpr")
Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData |
Version | 1.32.0 |
License | GPL (>= 3) |
Depends | R (>= 3.5.0) |
Imports | |
System Requirements | |
URL |
See More
Suggests | limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | DRIMSeq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GeuvadisTranscriptExpr_1.32.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeuvadisTranscriptExpr |
Package Short Url | https://bioconductor.org/packages/GeuvadisTranscriptExpr/ |
Package Downloads Report | Download Stats |