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Collection of spatial omics datasets

Bioconductor version: Release (3.18)

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]

Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>

Citation (from within R, enter citation("SpatialDatasets")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The SpatialDataset package HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version 1.0.0
License GPL-3
Depends ExperimentHub, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/SydneyBioX/SpatialDatasets
Bug Reports https://github.com/SydneyBioX/SpatialDatasets/issues
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Suggests BiocStyle, knitr, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package SpatialDatasets_1.0.0.tar.gz
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macOS Binary (x86_64)
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Source Repository git clone https://git.bioconductor.org/packages/SpatialDatasets
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpatialDatasets
Package Short Url https://bioconductor.org/packages/SpatialDatasets/
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