cfToolsData

DOI: 10.18129/B9.bioc.cfToolsData  

ExperimentHub data for the cfTools package

Bioconductor version: Release (3.18)

The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.

Author: Ran Hu [aut, cre] , Shuo Li [aut] , Xianghong Jasmine Zhou [aut] , Wenyuan Li [aut]

Maintainer: Ran Hu <huran at ucla.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cfToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cfToolsData")

 

HTML	R Script	cfToolsData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CancerData, DiseaseModel, ExperimentData, ExperimentHub, ReproducibleResearch, Tissue
Version	1.0.0
License	file LICENSE
Depends	R (>= 4.3.0)
Imports	utils, ExperimentHub
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/jasminezhoulab/cfToolsData
BugReports	https://github.com/jasminezhoulab/cfToolsData/issues
Depends On Me
Imports Me	cfTools
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cfToolsData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/cfToolsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cfToolsData
Package Short Url	https://bioconductor.org/packages/cfToolsData/
Package Downloads Report	Download Stats