sechm
This is the released version of sechm; for the devel version, see sechm.
sechm: Complex Heatmaps from a SummarizedExperiment
Bioconductor version: Release (3.23)
sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.
Author: Pierre-Luc Germain [cre, aut] 
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("sechm")):Pierre-Luc Germain. sechm: sechm: Complex Heatmaps from a SummarizedExperiment. doi:10.18129/B9.bioc.sechm, R package version 1.20.0, https://bioconductor.org/packages/sechm.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sechm")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sechm")| sechm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0), SummarizedExperiment, ComplexHeatmap |
| Imports | S4Vectors, seriation, circlize, methods, randomcoloR, stats, grid, grDevices, matrixStats |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/plger/sechm |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | SEtools |
| Imports Me | broadSeq |
| Suggests Me | OMA |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sechm_1.20.0.tar.gz |
| Windows Binary (x86_64) | sechm_1.20.0.zip |
| macOS Binary (big-sur-x86_64) | sechm_1.20.0.tgz |
| macOS Binary (sonoma-arm64) | sechm_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sechm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sechm |
| Package Short Url | https://bioconductor.org/packages/sechm/ |
| Package Downloads Report | Download Stats |