Package	Download_score
a4	729
a4Base	790
a4Classif	653
a4Core	672
a4Preproc	813
a4Reporting	538
ABAEnrichment	231
ABarray	771
abseqR	604
ABSSeq	737
acde	767
ACE	644
aCGH	1057
ACME	971
ADaCGH2	768
ADAM	561
ADAMgui	523
ADAPT	213
adaptest	80
adductomicsR	393
ADImpute	593
adSplit	841
adverSCarial	411
Aerith	347
AffiXcan	617
affxparser	3007
affy	9988
affycomp	957
AffyCompatible	337
affyContam	691
affycoretools	1161
AffyExpress	301
affyILM	689
affyio	10067
affylmGUI	924
affyPara	327
affypdnn	289
affyPLM	2127
affyQCReport	286
AffyRNADegradation	599
AffyTiling	168
AGDEX	671
aggregateBioVar	616
Agi4x44PreProcess	121
agilp	510
AgiMicroRna	858
AHMassBank	393
AIMS	1038
airpart	536
alabaster	412
alabaster.base	5504
alabaster.bumpy	406
alabaster.files	415
alabaster.mae	427
alabaster.matrix	5230
alabaster.ranges	5152
alabaster.sce	1650
alabaster.schemas	5022
alabaster.se	5134
alabaster.sfe	231
alabaster.spatial	466
alabaster.string	422
alabaster.vcf	428
ALDEx2	2240
alevinQC	689
AllelicImbalance	848
AlphaBeta	558
AlphaMissenseR	489
alpine	310
ALPS	82
AlpsNMR	683
alsace	178
altcdfenvs	868
AMARETTO	669
AMOUNTAIN	574
amplican	885
ampliQueso	187
AnalysisPageServer	120
anamiR	107
anansi	435
Anaquin	558
ANCOMBC	2711
AneuFinder	447
ANF	543
anglemania	495
animalcules	759
annaffy	950
AnnBuilder	75
anndataR	1469
annmap	657
annoLinker	334
annotate	21615
AnnotationDbi	46133
AnnotationFilter	12453
AnnotationForge	2837
AnnotationFuncs	225
AnnotationHub	14980
AnnotationHubData	1289
annotationTools	740
annotatr	1298
anota	668
anota2seq	672
antiProfiles	509
AnVIL	1166
AnVILAz	374
AnVILBase	855
AnVILBilling	448
AnVILGCP	410
AnVILPublish	438
AnVILVRS	86
AnVILWorkflow	268
APAlyzer	510
apComplex	790
apeglm	6970
APL	550
applera	45
appreci8R	672
aroma.light	2272
ArrayExpress	990
ArrayExpressHTS	223
arrayMagic	138
arrayMvout	811
arrayQCplot	33
arrayQuality	721
arrayQualityMetrics	1103
ArrayTools	320
ArrayTV	247
ARRmNormalization	535
artMS	574
ASAFE	421
ASEB	510
ASGSCA	570
ASICS	744
asmn	42
ASpediaFI	158
ASpli	890
AssessORF	665
ASSET	621
ASSIGN	742
assorthead	18350
ASURAT	615
asuri	350
ATACCoGAPS	111
atacInferCnv	275
ATACseqQC	958
ATACseqTFEA	604
atena	567
AtlasRDF	84
atSNP	637
attract	927
AUCell	4315
augere.core	104
augere.de	110
augere.gsea	112
augere.screen	88
augere.solo	118
autonomics	669
Autotuner	80
AWAggregator	324
AWFisher	532
awst	494
BaalChIP	596
BAC	289
bacon	749
BADER	534
BadRegionFinder	632
BAGS	483
ballgown	1843
bambu	885
BamScale	112
bamsignals	1959
BANDITS	604
bandle	618
Banksy	1007
banocc	433
barbieQ	453
barcodetrackR	209
barmixR	78
basecallQC	445
BaseSpaceR	619
Basic4Cseq	703
BASiCS	954
BASiCStan	456
BasicSTARRseq	547
basilisk	5292
basilisk.utils	3326
batchCorr	378
BatChef	250
batchelor	5393
BatchQC	628
BatchSVG	391
Battlefield	346
BayesKnockdown	492
BayesPeak	243
BayesSpace	1086
bayNorm	613
baySeq	1124
BBCAnalyzer	738
BCRANK	884
bcSeq	442
BDMMAcorrect	171
beachmat	21081
beachmat.hdf5	564
beachmat.tiledb	270
beadarray	1452
beadarraySNP	426
BeadDataPackR	1031
BeadExplorer	37
BEARscc	224
BEAT	828
BEclear	571
bedbaser	397
beer	403
benchdamic	624
BenchHub	121
BERT	389
betaHMM	479
betr	198
betterChromVAR	275
bettr	447
BG2	404
bgafun	262
BgeeCall	732
BgeeDB	641
BGmix	272
bgx	497
BHC	277
BicARE	755
BiFET	503
BiGGR	306
bigmelon	711
bigmemoryExtras	148
bigPint	199
bim	40
BindingSiteFinder	628
bioassayR	648
Biobase	62174
biobroom	727
biobtreeR	415
bioCancer	806
BioCartaImage	431
BiocAzul	257
BiocBaseUtils	14549
BiocBook	444
BiocBuildReporter	272
BiocCaseStudies	322
BiocCheck	3050
biocDatasets	30
BiocDockerManager	107
BiocDuckDB	7
BiocFHIR	507
BiocFileCache	28834
BiocGenerics	72581
Bioc.gff	360
biocGraph	822
BiocHail	291
BiocHubsShiny	459
BiocInstaller	299
BiocIO	22124
BiocMaintainerApp	261
biocmake	6361
BiocNeighbors	15542
BiocOncoTK	332
BioCor	662
BiocParallel	59395
BiocPkgDash	287
BiocPkgTools	808
biocroxytest	353
BiocSet	768
BiocSingular	17724
BiocSklearn	511
BiocStyle	8264
biocthis	1044
BiocVersion	75077
biocViews	5691
BiocWorkflowTools	600
biodb	638
biodbChebi	254
biodbExpasy	103
biodbHmdb	170
biodbKegg	141
biodbLipidmaps	110
biodbMirbase	82
biodbNcbi	159
biodbNci	153
biodbUniprot	158
bioDist	801
BioGA	363
biomaRt	24127
BioMedR	43
biomformat	7522
BioMM	178
BioMVCClass	674
biomvRCNS	707
BioNAR	547
BioNERO	732
BioNet	1034
BioNetStat	206
BioQC	789
BioSeqClass	276
biosigner	642
Biostrings	56539
biosvd	185
BioTIP	651
biotmle	620
biovizBase	6373
BiRewire	500
birta	223
birte	146
biscuiteer	754
BiSeq	833
BitSeq	407
blacksheepr	622
blase	481
blima	665
BLMA	696
BloodGen3Module	498
bluster	9951
bnbc	740
bnem	581
BOBaFIT	519
borealis	499
BPRMeth	428
BRAIN	797
brainflowprobes	184
brainImageR	40
BrainSABER	115
BrainStars	219
branchpointer	741
breakpointR	634
BreastSubtypeR	492
brendaDb	537
BREW3R.r	449
BRGenomics	317
bridge	317
BridgeDbR	682
broadSeq	451
BrowserViz	620
BrowserVizDemo	44
BSgenome	13988
BSgenomeForge	559
bsseq	2409
BubbleTree	374
BufferedMatrix	585
BufferedMatrixMethods	563
bugsigdbr	681
BulkSignalR	589
BUMHMM	617
bumphunter	3795
BumpyMatrix	1140
BUS	668
BUScorrect	625
BUSpaRse	762
BUSseq	567
CaDrA	416
CAEN	420
CAFE	939
CAGEfightR	853
cageminer	539
CAGEr	876
CALIB	290
CalibraCurve	369
calm	378
CAMERA	1297
CAMTHC	91
CaMutQC	491
canceR	587
cancerclass	909
CancerInSilico	195
CancerMutationAnalysis	286
CancerSubtypes	289
CAnD	202
caOmicsV	269
cardelino	589
Cardinal	1111
CardinalIO	609
CARDspa	542
carnation	269
CARNIVAL	622
casper	713
CATALYST	1059
Category	2145
categoryCompare	870
CatsCradle	467
CausalR	554
cbaf	586
CBEA	151
cBioPortalData	1099
CBN2Path	314
CBNplot	541
cbpManager	538
CCAFE	473
ccfindR	477
ccImpute	496
ccmap	277
CCPlotR	474
CCPROMISE	571
ccrepe	508
CDI	510
celaref	697
celda	1934
CellaRepertorium	192
CellBarcode	605
cellbaseR	635
CellBench	733
cellGrowth	193
cellHTS	309
cellHTS2	577
CelliD	564
cellity	659
CellMapper	582
CellMentor	306
cellmig	435
cellmigRation	466
CellMixS	790
cellNexus	78
CellNOptR	821
cellscape	415
CellScore	267
CellTrails	669
cellTree	290
cellxgenedp	483
CEMiTool	739
censcyt	514
Cepo	663
ceRNAnetsim	445
CeTF	684
CexoR	790
CFAssay	443
cfdnakit	540
cfDNAPro	616
cfTools	253
CGEN	535
CGHbase	1086
CGHcall	1035
cghMCR	735
CGHnormaliter	693
CGHregions	677
CGRphylo2	92
ChAMP	1403
CHARGE	82
charm	270
ChemmineOB	842
ChemmineR	1592
CHETAH	624
chevreulPlot	350
chevreulProcess	458
chevreulShiny	473
ChIC	131
Chicago	687
chihaya	592
chimera	314
chimeraviz	827
ChIPanalyser	681
ChIPComp	522
chipenrich	778
ChIPexoQual	720
ChIPpeakAnno	1648
ChIPQC	973
ChIPseeker	3552
chipseq	1351
ChIPseqR	836
ChIPSeqSpike	120
ChIPsim	769
ChIPXpress	560
chopsticks	661
chroGPS	269
Chromatograms	404
chromDraw	526
ChromHeatMap	750
ChromoViz	81
chromPlot	691
ChromSCape	743
chromstaR	459
chromswitch	227
chromVAR	1974
CHRONOS	557
cicero	908
cigarillo	15536
CIMICE	488
CINdex	334
circRNAprofiler	759
CircSeqAlignTk	440
cisPath	255
CiteFuse	654
CLAMP	123
ClassifyR	980
cleanUpdTSeq	923
CleanUpRNAseq	507
cleaver	844
clevRvis	442
clippda	708
clipper	887
cliProfiler	526
cliqueMS	547
Clomial	511
Clonality	275
ClonalSim	297
clonotypeR	203
clst	605
clstutils	621
CluMSID	554
ClustAll	449
clustComp	541
clusterExperiment	938
ClusterFoldSimilarity	437
ClusterGVis	405
ClusterJudge	572
clusterProfiler	28277
clusterSeq	595
ClusterSignificance	556
clusterStab	690
clustifyr	757
ClustIRR	468
clustSIGNAL	424
CMA	816
cmapR	1046
CNAnorm	611
CNEr	2440
cn.farms	839
cn.mops	1019
CNORdt	533
CNORfeeder	731
CNORfuzzy	660
CNORode	598
CNPBayes	167
CNTools	705
CNVfilteR	607
CNVgears	136
cnvGSA	611
CNViz	441
CNVMetrics	543
CNVPanelizer	665
CNVRanger	665
CNVrd2	772
CNVtools	179
cobindR	226
CoCiteStats	597
COCOA	739
codelink	989
CODEX	764
coexnet	179
CoGAPS	769
cogena	809
cogeqc	573
Cogito	471
coGPS	614
COHCAP	243
cola	871
comapr	487
combi	550
coMET	355
coMethDMR	585
compartmap	259
COMPASS	597
compcodeR	882
CompensAID	312
compEpiTools	822
CompGO	207
ComplexHeatmap	22994
CompoundDb	955
ComPrAn	406
compSPOT	367
CONCERTDR	6
conclus	97
concordexR	501
condcomp	32
condiments	633
CONFESS	711
consensus	509
ConsensusClusterPlus	3709
consensusDE	350
consensusOV	706
consensusSeekeR	673
consICA	545
CONSTANd	480
contiBAIT	397
conumee	766
convert	779
copa	668
COPDSexualDimorphism	45
copynumber	471
CopyNumber450k	100
CopyNumberPlots	637
CopywriteR	302
Coralysis	410
coRdon	803
CoRegFlux	74
CoRegNet	331
CoreGx	988
Cormotif	629
CorMut	152
coRNAi	169
CorNetto	5
corral	568
CORREP	281
coseq	730
CoSIA	473
cosmiq	618
cosmo	137
cosmoGUI	80
cosmosR	559
COSNet	547
COTAN	543
CountClust	183
countsimQC	844
covEB	536
CoverageView	673
covRNA	582
CPSM	433
cpvSNP	721
cqn	896
CrcBiomeScreen	292
CRImage	894
CRISPRball	420
crisprBase	624
crisprBowtie	562
crisprBwa	385
crisprDesign	658
crisprScore	661
CRISPRseek	753
crisprseekplus	235
crisprShiny	420
CrispRVariants	852
crisprVerse	455
crisprViz	622
crlmm	1182
CrossICC	53
crossmeta	345
crumblr	418
crupR	468
CSAR	705
csaw	1281
csdR	408
CSOA	365
CSSP	209
CSSQ	600
ctc	795
CTdata	561
CTDquerier	777
CTexploreR	536
ctgGEM	97
cTRAP	730
ctsGE	606
CTSV	444
cummeRbund	617
CuratedAtlasQueryR	349
customCMPdb	506
customProDB	630
CVE	124
cyanoFilter	545
cycle	662
cydar	721
cypress	477
CySA	12
CytoDx	475
cytofast	86
cytofkit	144
CyTOFpower	475
cytofQC	452
CytoGLMM	480
cytoKernel	505
cytolib	3555
cytomapper	969
CytoMDS	484
cytoMEM	492
CytoML	1366
CytoPipeline	541
CytoPipelineGUI	434
CytoTree	91
cytoviewer	550
dada2	3791
dagLogo	866
daMA	716
DAMEfinder	716
damidBind	396
DaMiRseq	817
Damsel	484
dandelionR	351
DAPAR	767
DaparToolshed	93
dar	477
DART	703
DASC	17
DASiR	109
dasper	126
DAssemble	76
DAVIDQuery	119
daVis	116
DBChIP	259
dbSequence	80
dcanr	746
DCATS	441
dce	246
dcGSA	451
DChIPRep	212
ddCt	752
ddgraph	152
ddPCRclust	571
dearseq	628
debCAM	293
debrowser	730
decemedip	337
DECIPHER	4465
deco	199
DEComplexDisease	185
decompTumor2Sig	590
DeconRNASeq	657
decontam	2721
decontX	997
DeconvoBuddies	498
deconvR	631
decoupleR	3259
DEDS	338
DeeDeeExperiment	469
DeepBlueR	261
DeepPINCS	462
deepSNV	1003
DeepTarget	429
DEFormats	829
DegCre	468
DegNorm	623
DEGraph	502
DEGreport	1223
DEGseq	819
DelayedArray	55119
DelayedDataFrame	588
DelayedMatrixStats	19041
DelayedRandomArray	464
DelayedTensor	528
DELocal	483
deltaCaptureC	505
deltaGseg	545
DeMAND	417
DeMixT	667
demuxmix	515
demuxSNP	518
DenoIST	326
densvis	1025
DEP	999
DepecheR	575
DepInfeR	479
DeProViR	41
DEqMS	862
derfinder	1307
derfinderHelper	1021
derfinderPlot	865
DEScan2	767
DESeq	1025
DESeq2	31269
DEsingle	637
DESpace	678
destiny	1765
DEsubs	735
DEWSeq	657
DExMA	541
DEXSeq	2497
dexus	236
DFP	681
DFplyr	428
DIAlignR	170
DiffBind	2131
diffcoexp	529
diffcyt	982
DifferentialRegulation	525
diffGeneAnalysis	502
diffHic	926
DiffLogo	563
diffloop	315
diffuStats	565
diffUTR	588
diggit	551
Dino	553
dinoR	458
Director	177
dir.expiry	12078
DirichletMultinomial	5974
discordant	578
DiscoRhythm	639
distinct	676
dittoSeq	1704
divergence	509
dks	487
DMCFB	595
DMCHMM	601
dmGsea	441
DMRcaller	825
DMRcate	1662
DMRforPairs	306
DMRScan	736
dmrseq	958
DNABarcodeCompatibility	433
DNABarcodes	603
DNAcopy	4779
DNAcycP2	406
dnaEPICO	158
DNAfusion	613
DNaseR	62
DNAshapeR	786
DNEA	403
domainsignatures	177
dominatR	341
DominoEffect	597
dominoSignal	471
doppelgangR	678
DOQTL	218
Doscheda	687
DOSE	27650
doseR	621
DOtools	361
DOTSeq	359
doubletrouble	599
dpeak	135
drawProteins	599
dreamlet	759
DRIMSeq	1009
DriverNet	517
DropletUtils	3701
drugfindR	329
drugTargetInteractions	486
DrugVsDisease	691
dSimer	141
DspikeIn	483
DSS	1465
dStruct	475
DTA	530
dualKS	304
DuckDBArray	34
DuckDBDataFrame	23
DuckDBGRanges	27
DuckDBSpatial	15
Dune	449
DupChecker	123
DuplexDiscovereR	420
dupRadar	630
dyebias	797
DynDoc	2288
easier	669
EasyCellType	525
easylift	455
EasyqpcR	219
easyreporting	565
easyRNASeq	809
EBarrays	1047
EBcoexpress	694
EBImage	3790
EBSEA	489
EBSeq	986
EBSeqHMM	238
ecolitk	844
EDASeq	2353
edd	138
EDDA	213
edge	705
edgeR	30355
EDIRquery	429
eds	575
eegc	271
EGAD	597
EGSEA	882
eiR	621
eisa	376
eisaR	688
ELBOW	216
ELMER	698
ELViS	443
EMDomics	627
EMMA	120
EmpiricalBrownsMethod	531
EMTscore	86
ENCODExplorer	165
EnhancedVolcano	7418
enhancerHomologSearch	579
EnMCB	616
ENmix	911
EnrichDO	452
EnrichedHeatmap	1720
EnrichmentBrowser	1198
enrichplot	29029
enrichTF	206
enrichViewNet	492
ensembldb	10715
ensemblVEP	298
ENVISIONQuery	181
epialleleR	598
EpiCompare	569
epidecodeR	520
EpiDISH	1534
epigenomix	742
epigraHMM	700
epihet	130
EpiMix	593
epimutacions	595
epiNEM	656
EpipwR	318
epiregulon	463
epiregulon.extra	489
epiRomics	258
epiSeeker	367
epistack	604
epistasisGA	478
EpiTxDb	625
epivizr	875
epivizrChart	711
epivizrData	707
epivizrServer	561
epivizrStandalone	634
erccdashboard	783
erma	396
ERSSA	624
esATAC	864
escape	956
escheR	660
esetVis	702
eudysbiome	732
evaluomeR	569
EventPointer	671
EWCE	780
ExCluster	443
ExiMiR	765
exomeCopy	561
exomePeak	271
exomePeak2	242
exonmap	86
ExperimentHub	10548
ExperimentHubData	1059
ExperimentSubset	548
explorase	175
ExploreModelMatrix	708
exploreSE	31
ExpoRiskR	268
ExpressionAtlas	649
ExpressionView	268
exprExternal	34
externalVector	77
extraChIPs	657
fabia	751
facopy	209
factDesign	726
factR	458
faers	551
FamAgg	644
famat	620
Fancy	12
farms	352
fastLiquidAssociation	595
FastqCleaner	697
fastRanges	341
fastreeR	509
fastseg	1661
fbat	91
FCBF	209
fCCAC	730
fCI	571
fcoex	176
fcScan	516
fdrame	582
FEAST	710
FeatSeekR	402
fedup	515
FELLA	791
FEM	188
fenr	488
ffpe	706
fgga	519
FGNet	755
fgsea	28115
FilterFFPE	593
findIPs	441
FindIT2	608
FindMyFriends	206
FinfoMDS	317
FISHalyseR	491
fishash	53
fishpond	1191
FitHiC	396
flagme	634
FLAMES	622
flipflop	182
flowAI	1096
flowBeads	694
flowBin	651
flowcatchR	824
flowCHIC	659
flowCL	219
flowClean	789
flowClust	2018
flowCore	4175
flowCut	710
flowCyBar	458
flowDensity	904
flowFit	182
flowFlowJo	126
flowFP	996
flowGate	492
flowGraph	495
flowMap	331
flowMatch	765
flowMeans	911
flowMerge	717
flowPeaks	705
flowPhyto	112
flowPloidy	553
flowPlots	495
flowQ	255
flowQB	182
FlowRepositoryR	174
FlowSOM	1860
flowSpecs	670
flowSpy	77
flowStats	1527
flowTime	634
flowTrans	662
flowType	260
flowUtils	359
flowViz	2093
flowVS	749
flowWorkspace	2473
fmcsR	892
fmrs	421
fobitools	576
focalCall	155
FoldGO	230
FourCSeq	285
fourSynergy	351
fRagmentomics	349
fraq	270
FRASER	775
frenchFISH	332
FRGEpistasis	441
frma	858
frmaTools	680
FScanR	102
FunChIP	245
FunciSNP	292
funOmics	341
funtooNorm	625
FuseSOM	530
G4SNVHunter	436
GA4GHclient	573
GA4GHshiny	547
gaga	751
gage	1665
gaggle	360
gaia	216
GAPGOM	133
GAprediction	449
garfield	415
GARS	547
GateFinder	532
gatom	529
gaucho	126
GBScleanR	490
gcapc	816
gcatest	523
gCMAP	230
gCMAPWeb	243
GCPtools	590
gCrisprTools	871
gcrma	2064
GCSConnection	66
GCSFilesystem	54
GCSscore	188
GDCRNATools	859
gDNAx	505
gDR	396
gDRcore	438
gDRimport	518
gDRstyle	481
gDRutils	427
GDSArray	587
gdscloud	5
gdsfmt	3118
GeDi	385
geecc	167
GEM	525
gemini	473
gemma.R	559
genArise	604
genbankr	383
gene2pathway	77
GeneAccord	156
GeneAnswers	296
geneAttribution	582
GeneBreak	739
geneClassifiers	576
geneClusterPattern	5
GENE.E	95
GeneExpressionSignature	763
genefilter	14751
genefu	1304
GeneGA	336
GeneGeneInteR	298
GeneGroupAnalysis	45
GeneMeta	980
GeneNetworkBuilder	883
GeneOverlap	1477
geneplast	676
geneplotter	4500
GeneR	111
geneRecommender	609
GeneRegionScan	979
GeneRfold	35
geneRxCluster	586
GeneSelectMMD	700
GeneSelector	236
GENESIS	1193
GeneSpring	94
GeneStructureTools	648
geNetClassifier	784
GeneticsBase	82
GeneticsDesign	177
GeneticsPed	510
GeneTonic	782
GeneTraffic	83
GeneTS	70
geneXtendeR	606
GENIE3	2097
genoCN	295
GenoGAM	236
genomation	1523
GenomAutomorphism	539
GenomeBase	30
GenomeGraphs	283
GenomeInfoDb	39421
genomeIntervals	795
genomes	514
GenomicAlignments	25979
GenomicCoordinates	261
GenomicDataCommons	1656
GenomicDistributions	674
GenomicFeatures	18728
GenomicFiles	1566
genomicInstability	492
GenomicInteractionNodes	472
GenomicInteractions	1169
GenomicOZone	573
GenomicPlot	536
GenomicRanges	54879
GenomicScores	1260
GenomicSuperSignature	695
GenomicTuples	714
Genominator	273
genoset	289
genotypeeval	236
GenoView	68
genphen	207
GenProSeq	369
GenRank	104
GenVisR	942
GeoDiff	564
GEOexplorer	207
GEOfastq	330
GEOmetadb	844
geomeTriD	475
GeomxTools	872
GEOquery	15140
GEOsearch	84
GEOsubmission	599
GeoTcgaData	570
gep2pep	480
gesel	84
gespeR	333
getDEE2	433
geva	504
GEWIST	469
GExPipe	120
geyser	394
gff3Plotter	40
gg4way	497
GGBase	357
ggbio	3230
ggcyto	1882
ggkegg	830
ggmanh	598
ggmsa	1090
GGPA	515
ggsc	492
ggseqalign	367
ggspavis	951
GGtools	420
ggtree	33233
ggtreeDendro	409
ggtreeExtra	2530
ggtreeSpace	369
GIGSEA	448
ginmappeR	374
gINTomics	450
girafe	603
GISPA	242
GLAD	887
GladiaTOX	547
Glimma	1582
glmGamPoi	6747
glmSparseNet	671
GlobalAncova	1830
globalSeq	547
globaltest	2617
GloScope	488
glycoTraitR	290
gmapR	586
GmicR	591
gmoviz	697
GMRP	639
GNET2	361
GNOSIS	481
GOaGO	335
goatea	402
goCluster	32
GOexpress	814
GOfan	284
GOfuncR	687
GOFunction	278
GoogleGenomics	138
GOpro	705
goProfiles	848
GOSemSim	26457
goseq	2116
GOSim	351
goSorensen	469
goSTAG	696
GOstats	2179
GOsummaries	302
GOTHiC	929
goTools	674
GPA	394
gpart	186
GPlinksR	66
gpls	857
gprege	216
gpuMagic	246
gQTLBase	209
gQTLstats	214
GrafGen	480
gramm4R	53
GRaNIE	796
granulator	193
graper	498
graph	24779
GraphAlignment	510
GraphAT	778
GraphExperiment	326
graphite	6612
GraphPAC	321
GRENITS	506
GreyListChIP	1714
GRmetrics	664
groHMM	874
growkar	10
GRridge	233
GSABenchmark	273
GSALightning	518
GSAR	796
GSCA	634
gscreend	575
GSEABase	12795
GSEABenchmarkeR	656
GSEAlens	49
GSEAlm	825
GSEAmining	498
gsean	558
GSgalgoR	532
GSReg	623
GSRI	725
GSVA	12154
gtrellis	760
GUIDEseq	957
Guitar	794
gVenn	386
Gviz	4312
GWAS.BAYES	525
gwascat	1283
GWASTools	1384
gwasurvivr	562
GWENA	619
gypsum	4960
h5mread	14237
h5vc	1057
hammers	298
hapFabia	669
Harman	784
HarmonizR	416
Harshlight	453
hca	214
HCABrowser	88
HCAExplorer	54
HCAMatrixBrowser	32
HCsnip	163
HDF5Array	19320
HDTD	438
hdxmsqc	505
heatmaps	910
Heatplus	939
HelloRanges	749
HELP	705
HEM	711
hermes	667
HERON	467
Herper	373
hexbin	141
HGC	436
hiAnnotator	392
HIBAG	703
HicAggR	491
HiCaptuRe	397
HiCBricks	788
HiCcompare	939
HiCDCPlus	578
HiCDOC	583
HiCExperiment	585
HiContacts	681
HiCool	289
HiCParser	372
HiCPotts	357
hicrep	74
hicVennDiagram	451
hierGWAS	569
hierinf	360
HilbertCurve	741
HilbertVis	794
HilbertVisGUI	298
HiLDA	654
hipathia	786
HIPPO	460
hiReadsProcessor	342
HIREewas	530
HiSpaR	231
HistoImagePlot	309
HiTC	950
hmdbQuery	450
HMMcopy	896
HoloFoodR	441
hoodscanR	532
hopach	1090
HPAanalyze	698
hpar	1122
HPAStainR	79
HPiP	527
HTqPCR	869
HTSanalyzeR	284
HTSeqGenie	172
htSeqTools	268
HTSFilter	946
HuBMAPR	405
HubPub	971
HumanTranscriptomeCompendium	220
hummingbird	516
HVP	369
HybridExpress	459
HybridMTest	607
hypeR	493
hyperdraw	661
hypergraph	735
iASeq	443
iasva	565
iBBiG	443
Ibex	358
ibh	538
iBMQ	423
iCARE	554
Icens	991
icetea	654
iCheck	631
iChip	706
iClusterPlus	770
iCNV	524
iCOBRA	982
ideal	892
IdeoViz	698
idiogram	927
IdMappingAnalysis	218
IdMappingRetrieval	183
idpr	584
idr2d	598
IFAA	364
iFlow	53
igblastr	752
iGC	595
IgGeneUsage	540
igvR	788
igvShiny	528
IHW	1689
illuminaio	4011
ILoReg	577
ImageArray	334
imageFeatureTCGA	259
imageHTS	367
imageTCGA	370
imageTCGAutils	319
IMAS	427
imcRtools	858
Imetagene	169
IMMAN	450
immApex	811
immGLIPH	91
immLynx	288
immReferent	384
ImmuneSpaceR	258
immunoClust	682
immunogenViewer	352
immunotation	443
iModMix	305
IMPCdata	403
ImpulseDE	80
ImpulseDE2	116
impute	13931
INDEED	402
iNETgrate	511
infercnv	2442
infinityFlow	533
Informeasure	423
InPAS	903
INPower	533
inSilicoDb	161
inSilicoMerging	111
INSPEcT	908
INTACT	426
InTAD	636
intansv	740
interacCircos	377
InteractionSet	2275
InteractiveComplexHeatmap	954
interactiveDisplay	693
interactiveDisplayBase	2840
InterCellar	563
IntEREst	737
InterMineR	299
IntOMICS	71
IntramiRExploreR	521
inveRsion	191
IONiseR	775
iontree	131
iPAC	361
iPath	419
ipdDb	549
IPO	640
IPPD	208
IRanges	66405
IRISFGM	139
IrisSpatialFeatures	39
ISAnalytics	635
iscream	426
iSEE	1053
iSEEde	503
iSEEfier	423
iSEEhex	509
iSEEhub	575
iSEEid	103
iSEEindex	476
iSEEpathways	501
iSEEtree	495
iSEEu	661
iSeq	526
ISLET	501
islify	379
iSNetwork	48
isobar	882
IsoBayes	466
IsoCorrectoR	523
IsoCorrectoRGUI	450
IsoformSwitchAnalyzeR	1143
IsoGeneGUI	357
ISoLDE	442
isomiRs	781
iSPlot	49
ITALICS	709
iterativeBMA	592
iterativeBMAsurv	489
iterClust	178
iteremoval	129
IVAS	702
ivygapSE	511
IWTomics	597
jazzPanda	500
jmosaics	111
joda	220
JunctionSeq	172
jvecfor	251
karyoploteR	1767
katdetectr	556
KBoost	360
KCsmart	778
kebabs	853
KEGGemUP	52
KEGGgraph	6654
KEGGlincs	653
keggorth	50
keggorthology	896
KEGGprofile	223
KEGGREST	44525
KEGGSOAP	120
kimod	109
KinSwingR	500
kissDE	583
kmcut	391
KnowSeq	553
knowYourCG	324
koinar	393
LACE	663
LACHESIS	379
lapmix	368
LBE	737
lcmsPlot	330
ldblock	602
LEA	1235
leapR	262
LedPred	472
lefser	1118
lemur	545
les	683
levi	495
lfa	606
Lheuristic	326
limma	43595
limmaGUI	859
limpa	467
limpca	470
LimROTS	426
LINC	139
LineagePulse	187
lineagespot	420
LinkHD	549
linkSet	189
Linnorm	847
LinTInd	249
lionessR	636
LIPIDIFy	1
lipidr	644
LipidTrend	330
LiquidAssociation	621
lisaClust	634
lmdme	634
LMGene	326
lncRna	294
LOBSTAHS	572
loci2path	575
logicFS	675
logitT	297
Logolas	116
lol	149
LOLA	848
looking4clusters	360
LoomExperiment	965
LowMACA	245
LPE	661
LPEadj	295
lpNet	525
lpsymphony	1815
LRBaseDbi	543
LRcell	531
LRDE	243
lumi	2095
lute	104
LVSmiRNA	241
LymphoSeq	660
M3C	925
M3D	209
M3Drop	845
m6Aboost	526
maanova	394
Maaslin2	1496
maaslin3	691
Macarron	425
macat	467
maCorrPlot	618
MACPET	168
MACSQuantifyR	479
MACSr	516
maDB	150
made4	1031
MADSEQ	393
maftools	3342
MAGAR	528
MAGeCKFlute	330
magpie	543
magrene	478
MAI	524
maigesPack	453
MAIT	592
makecdfenv	1017
makePlatformDesign	56
MANOR	645
manta	262
MantelCorr	569
MAPFX	467
mAPKL	295
maPredictDSC	544
mapscape	510
mariner	460
markeR	429
marr	550
marray	2902
martini	555
maser	752
maSigPro	1040
maskBAD	668
MassArray	513
massiR	702
MassSpecWavelet	2814
MAST	3420
mastR	610
matchBox	492
matchprobes	107
MatrixGenerics	50856
MatrixQCvis	602
MatrixRider	652
matter	939
MaxContrastProjection	97
MBAmethyl	418
MBASED	700
MBCB	544
MBECS	505
mbkmeans	1197
mbOmic	55
mBPCR	733
MBQN	529
mbQTL	404
MBttest	635
mcaGUI	211
MCbiclust	796
MCRestimate	233
mCSEA	740
mdgsa	239
mdp	570
mdqc	618
MDSvis	267
MDTS	488
MEAL	799
MeasurementError.cor	487
MEAT	709
MEB	566
MEDIPS	880
MEDME	686
megadepth	560
MEIGOR	615
Melissa	347
MeLSI	266
memes	676
MergeMaid	325
Mergeomics	616
MeSHDbi	797
meshes	693
meshr	789
MeSHSim	66
MesKit	693
messina	652
metaArray	307
Metab	277
metabCombiner	565
metabinR	539
MetaboAnnotation	695
MetaboAnnotatoR	279
MetaboCoreUtils	3750
MetaboDynamics	426
metabolomicsWorkbenchR	606
metabom8	315
metabomxtr	595
MetaboSignal	772
metaCCA	464
MetaCyto	531
MetaDICT	367
metagene	441
metagene2	747
metagenomeFeatures	192
metagenomeSeq	2633
metahdep	489
metaMS	784
MetaNeighbor	401
MetaPathNet	66
MetaPhOR	513
metapod	8389
metapone	544
MetaProViz	333
metaSeq	712
metaseqR	286
metaseqR2	737
metavizr	216
MetaVolcanoR	171
metaX	48
MetCirc	612
MethCP	153
methimpute	645
methInheritSim	613
methodical	435
MethPed	816
MethReg	530
methrix	757
MethTargetedNGS	528
methVisual	241
methyAnalysis	307
MethylAid	853
methylCC	736
methylclock	712
methylGSA	748
methyLImp2	422
methylInheritance	683
methylKit	1597
MethylMix	750
methylMnM	811
methylPipe	797
methylscaper	593
MethylSeekR	889
methylSig	624
methylumi	2439
methyvim	118
MetID	493
MetMashR	463
MetNet	745
mfa	351
Mfuzz	2084
MGFM	699
MGFR	592
MGnifyR	515
mgsa	632
mia	2710
miaDash	399
miaSim	507
miaTime	492
miaViz	885
MiChip	642
microbiome	2902
microbiomeDASim	482
microbiomeExplorer	581
microbiomeMarker	477
MicrobiomeProfiler	493
MicrobiotaProcess	1009
microRNA	1379
microSTASIS	112
MICSQTL	472
midasHLA	450
MIGSA	240
miloR	1848
mimager	632
MIMOSA	254
mina	470
MineICA	599
minet	1370
minfi	3610
MinimumDistance	897
MiPP	686
miQC	701
MIRA	680
MiRaGE	898
miRBaseConverter	740
miRcomp	721
mirIntegrator	720
MIRit	485
miRLAB	675
miRmine	289
miRNAmeConverter	529
miRNApath	545
miRNAtap	726
miRSM	684
miRsponge	68
miRspongeR	585
Mirsynergy	162
mirTarRnaSeq	593
missMethyl	1757
missRows	549
mist	388
mistyR	563
mitch	544
mitoClone2	520
mitology	459
mitoODE	150
mixOmics	5060
MLInterfaces	1364
mlm4omics	43
MLP	927
MLSeq	751
MMAPPR2	114
MMDiff	161
MMDiff2	761
mmgmos	49
mmnet	113
MmPalateMiRNA	247
MMUPHin	660
mnem	715
moanin	449
mobileRNA	448
MobilityTransformR	104
MODA	517
ModCon	390
Modstrings	667
MOFA	83
MOFA2	1736
MOGAMUN	437
mogsa	837
MoleculeExperiment	441
MOMA	667
monaLisa	829
monocle	4255
Moonlight2R	562
MoonlightR	784
MoPS	160
mosaics	918
mosbi	382
MOSClip	458
mosdef	730
MOSim	745
Motif2Site	561
motifbreakR	685
motifcounter	396
MotifDb	1625
motifmatchr	2407
MotifPeeker	353
motifRG	240
motifStack	1511
motifTestR	493
MotIV	303
MouseFM	507
MPAC	368
MPFE	420
mpra	726
MPRAnalyze	542
MQmetrics	128
mQTL.NMR	149
msa	2726
MSA2dist	547
MsBackendMassbank	512
MsBackendMassIVE	62
MsBackendMetaboLights	383
MsBackendMetabolomicsWorkbench	59
MsBackendMgf	1192
MsBackendMsp	748
MsBackendRawFileReader	512
MsBackendSql	523
MsCoreUtils	4821
MsDataHub	586
MSEADbi	37
MsExperiment	2104
MsFeatures	2338
msgbsR	592
MSGFgui	218
MSGFplus	181
msImpute	578
mslp	340
msmsEDA	732
msmsTests	772
MSnbase	5048
MSnID	990
mspms	491
MSPrep	410
msPurity	606
msqrob2	789
MsQuality	534
MsStash	70
MSstats	1336
MSstatsBig	378
MSstatsBioNet	411
MSstatsConvert	1044
MSstatsLiP	589
MSstatsLOBD	415
MSstatsPTM	740
MSstatsQC	574
MSstatsQCgui	400
MSstatsResponse	409
MSstatsSampleSize	162
MSstatsShiny	505
MSstatsTMT	862
MSstatsTMTPTM	45
MSTree	71
MTseeker	67
MuData	551
Mulcom	681
MultiAssayExperiment	9054
MultiAssaySpatialExperiment	10
MultiBaC	497
multiClust	665
multicrispr	623
MultiDataSet	2567
multiGSEA	615
multiHiCcompare	790
MultiMed	555
multiMiR	1322
MultimodalExperiment	532
MultiOmicsBridge	111
multiOmicsViz	230
MultipleAlignment	126
multipointR	58
MultiRNAflow	516
multiscan	659
multiSight	128
multistateQTL	421
multiWGCNA	504
multtest	13850
mumosa	573
MungeSumstats	1082
muscat	1671
muscle	887
musicatk	689
MutationalPatterns	1056
mutscan	426
MutSeqR	366
MVCClass	647
mvGST	141
MWASTools	736
mygene	897
myvariant	674
mzID	4294
mzR	5194
NADfinder	815
NanoMethViz	631
NanoStringDiff	596
NanoStringNCTools	996
NanoStringQCPro	248
nanotatoR	178
NanoTube	574
NarrowPeaks	231
NBAMSeq	530
NBSplice	163
ncdfFlow	2280
ncGTW	546
NCIgraph	434
ncRNAtools	540
ndexr	481
neaGUI	115
nearBynding	382
Nebulosa	1844
NeighborNet	174
nem	460
nempi	489
NetActivity	489
netbenchmark	129
netbiov	297
netboost	454
netboxr	121
netDx	146
nethet	656
netOmics	127
NetPathMiner	580
netprioR	416
netReg	96
netresponse	716
NetSAM	645
netSmooth	682
networkBMA	227
netZooR	227
NeuCA	156
NewWave	509
NGScopy	156
ngsReports	653
nipalsMCIA	549
nnNorm	654
nnSVG	669
NOISeq	1127
nondetects	633
NoRCE	602
normalize450K	607
NormalyzerDE	763
NormqPCR	706
normr	819
normScore	6
notame	416
notameStats	336
notameViz	374
NPARC	569
npGSEA	726
NTW	513
nucleoSim	598
nucleR	903
nuCpos	511
nudge	211
nullranges	688
NuPoP	613
NxtIRFcore	140
OAtools	277
occugene	504
OCplus	827
octad	529
ODER	107
odseq	499
OGRE	527
OGSA	166
oligo	3807
oligoClasses	3166
OLIN	859
OLINgui	670
omada	313
OmaDB	625
omicade4	787
OmicCircos	728
omicplotR	481
omicRexposome	687
omicsGMF	382
OmicsLonDA	176
OmicsMarkeR	148
OmicsMLRepoR	296
OMICsPCA	665
omicsPrint	762
omicsViewer	537
Omixer	466
OmnipathR	2338
ompBAM	496
omXplore	444
Onassis	151
oncomix	548
oncoscanR	472
OncoScore	600
OncoSimulR	632
oneChannelGUI	267
oneSENSE	155
onlineFDR	418
ontoCAT	174
ontoProc	736
ontoProc2	76
ontoTools	143
openCyto	1791
openPrimeR	731
openPrimeRui	197
OpenStats	395
OperaMate	80
oposSOM	659
oppar	763
oppti	182
optimalFlow	482
OPWeight	556
OrderedList	694
ORFhunteR	530
ORFik	889
OrganismDbi	3439
Organism.dplyr	480
orthogene	1156
orthos	500
OSAT	623
Oscope	680
OSTA.data	446
OTUbase	770
OutlierD	270
OUTRIDER	879
OutSplice	540
OVESEG	573
PAA	823
packFinder	573
padma	562
PADOG	830
pageRank	462
PAIRADISE	575
paircompviz	556
pairedGSEA	472
pairkat	503
pairseqsim	23
pamr	139
pandaR	780
panelcn.mops	667
PAnnBuilder	188
PanomiR	561
panoramic	100
panp	836
PANR	647
PanViz	141
PanVizGenerator	164
PAPi	208
parati	303
pareg	117
parglms	624
parody	678
partCNV	252
PAST	604
Path2PPI	611
pathifier	576
pathlinkR	523
pathMED	238
PathNet	566
PathoStat	651
pathprint	107
pathRender	692
pathVar	248
pathview	5549
pathwayPCA	612
PathwaySplice	162
PatientGeneSets	49
paxtoolsr	253
Pbase	223
pbcmc	100
pcaExplorer	973
pcaGoPromoter	185
pcaMethods	7029
PCAN	693
PCAtools	1683
pcot2	371
PCpheno	377
pcxn	164
PDATK	604
pdInfoBuilder	939
pdmclass	274
PeacoQC	807
peakCombiner	358
peakPantheR	564
PECA	632
peco	549
Pedixplorer	471
pengls	382
PepSetTest	381
PepsNMR	583
pepStat	706
pepVet	12
pepXMLTab	525
PERFect	158
periodicDNA	672
perturbatr	111
pfamAnalyzeR	611
PFP	104
PGA	303
pgca	384
pgen2gds	70
PGSEA	436
pgUtils	85
pgxRpi	316
phantasus	713
phantasusLite	411
PharmacoGx	1081
phemd	227
phenoDist	172
PhenoGeneRanker	320
phenomis	422
phenopath	751
phenoTest	880
PhenStat	358
philr	772
PhIPData	559
phosphonormalizer	479
PhosR	850
phylobar	114
PhyloProfile	587
phyloseq	7929
Pi	314
piano	1274
PICB	477
pickgene	540
PICS	527
Pigengene	722
PING	510
PinPath	128
pint	173
pipeComp	659
pipeFrame	586
PIPETS	353
Pirat	446
PIUMA	474
pkgDepTools	356
plaid	324
planet	689
planttfhunter	459
plasmut	364
plateCore	294
plethy	321
plgem	837
plier	746
PlinkMatrix	313
PloGO2	155
plotgardener	761
plotGrouper	487
PLPE	617
plrs	253
PLSDAbatch	463
plw	278
plyinteractions	561
plyranges	1752
plyxp	567
pmm	449
pmp	658
PMScanR	366
PoDCall	465
podkat	900
poem	452
pogos	596
polyester	433
Polyfit	174
polyICSFlow	6
PolySTest	425
Polytect	352
POMA	672
posDemux	349
POST	102
PostChicago	72
postNet	428
PoTRA	116
PowerExplorer	89
powerTCR	678
POWSC	547
ppcseq	541
PPInfer	583
ppiStats	413
pqsfinder	820
prada	339
pram	678
prebs	703
preciseTAD	700
PrecisionTrialDrawer	114
PREDA	841
predictionet	191
preprocessCore	18113
primirTSS	693
PrInCE	564
Prize	110
proActiv	702
proBAMr	692
proBatch	603
PROcess	684
procoil	779
ProCoNA	189
proDA	820
proFIA	200
profileplyr	736
profileScoreDist	541
progeny	1686
projectR	709
pRoloc	1360
pRolocGUI	755
PROMISE	617
PRONE	531
PROPER	693
PROPS	624
Prostar	659
prot2D	199
proteasy	106
ProteinBatcher	8
proteinProfiles	453
ProteoDisco	628
ProteomicsAnnotationHubData	176
ProteoMM	568
proteoQC	181
protGear	577
ProtGenerics	12729
PSEA	325
psichomics	793
PSICQUIC	232
PSMatch	3631
psygenet2r	356
ptairMS	612
PTMods	1022
PubScore	106
pulsedSilac	115
puma	983
PureCN	1042
pvac	640
pvca	837
Pviz	669
pwalign	9023
PWMEnrich	987
pwOmics	415
pwrEWAS	129
qckitfastq	187
qcmetrics	897
QDNAseq	1087
QFeatures	4280
QFeaturesGUI	4
qmtools	527
qpcrNorm	701
qpgraph	1191
qPLEXanalyzer	684
qrqc	323
QRscore	396
qsea	749
qsmooth	631
QSutils	637
qsvaR	549
QTLExperiment	452
Qtlizer	492
QUALIFIER	229
quantiseqr	1538
quantMSImageR	22
quantro	1009
quantsmooth	1141
QuartPAC	279
QuasR	1291
QuaternaryProd	412
QUBIC	585
queeems	266
qusage	1134
qvalue	26662
R3CPET	691
r3Cseq	903
R453Plus1Toolbox	816
R4RNA	1189
RadioGx	657
raer	594
RaggedExperiment	1646
RAIDS	491
rain	696
rama	332
RamiGO	136
ramr	567
ramwas	753
RandomWalkRestartMH	185
randPack	601
randRotation	332
RankMap	287
RankProd	939
RAREsim	385
RareVariantVis	759
Rariant	306
Rarr	803
rawDiag	378
rawrr	554
RbcBook1	1036
Rbec	345
RBedMethyl	308
RBGL	10415
RBioFormats	686
RBioinf	460
rBiopaxParser	1147
rBLAST	472
RBM	561
Rbowtie	997
Rbowtie2	731
RbowtieCuda	154
RBPEqBind	3
RBPSpecificity	94
rbsurv	635
Rbwa	353
Rcade	406
RCAS	803
RCASPAR	458
rcellminer	776
rCGH	988
Rchemcpp	216
RchyOptimyx	205
RcisTarget	1618
RCM	644
Rcollectl	160
Rcpi	759
RCSL	506
Rcwl	492
RcwlPipelines	467
RCX	523
RCy3	1589
RCyjs	656
RCytoscape	142
RDAVIDWebService	221
Rdbi	103
RdbiPgSQL	42
rDGIdb	197
Rdisop	1301
RDRToolbox	621
ReactomeContentService4R	115
ReactomeGraph4R	100
ReactomeGSA	677
ReactomePA	6363
readat	135
ReadqPCR	717
reb	352
REBET	444
rebook	510
receptLoss	166
reconsi	396
recount	1152
recount3	1343
recountmethylation	679
recoup	866
RedeR	1001
RedisParam	435
REDseq	725
ReducedExperiment	442
RefNet	210
RefPlus	487
Rega	267
RegEnrich	586
regionalpcs	387
RegionalST	539
regioneR	2720
regioneReloaded	508
regionReport	813
regsplice	612
regutools	605
REMP	666
Repitools	638
ReportingTools	1402
reposTools	44
RepViz	490
ReQON	334
ResidualMatrix	5285
RESOLVE	494
Resourcerer	127
restfulSE	269
retrofit	480
ReUseData	370
rexposome	877
rfaRm	539
Rfastp	607
RFGeneRank	170
RFLOMICS	519
rflowcyt	150
rfPred	726
rGADEM	557
RGalaxy	261
rGenomeTracks	434
Rgin	111
RGMQL	174
RgnTX	211
rgoslin	563
RGraph2js	632
Rgraphviz	10808
rGREAT	1397
RGSEA	687
rgsepd	741
rhdf5	26538
rhdf5client	621
rhdf5filters	25296
Rhdf5lib	27724
rhinotypeR	414
Rhisat2	679
Rhtslib	27077
rHVDM	356
RiboCrypt	562
RiboDiPA	577
RiboProfiling	533
ribor	560
riboSeqR	814
ribosomeProfilingQC	715
rifi	468
rifiComparative	403
Rigraphlib	2420
rigvf	288
RImmPort	487
Ringo	601
Rintact	65
RIPAT	172
RIPSeeker	264
Risa	413
RITAN	565
RIVER	604
RJMCMCNucleosomes	654
RLassoCox	396
RLMM	536
RLSeq	120
RMAGEML	60
Rmagpie	640
RMAPPER	97
RMassBank	885
rMAT	215
rmelting	464
RmiR	228
Rmmquant	562
rmspc	490
RmzTabM	53
RNAAgeCalc	652
RNAdecay	467
rnaEditr	547
RNAinteract	331
RNAither	316
RNAmodR	691
RNAmodR.AlkAnilineSeq	606
RNAmodR.ML	631
RNAmodR.RiboMethSeq	566
RNAprobR	200
RNAsense	513
rnaseqcomp	619
RNAseqCovarImpute	443
rnaSeqMap	327
RNASeqPower	585
RNASeqR	136
RnaSeqSampleSize	648
RNAshapeQC	304
RnBeads	1010
Rnits	688
roar	771
roastgsa	486
ROC	1951
ROCpAI	481
RolDE	452
Roleswitch	210
Rolexa	161
rols	1114
ROntoTools	835
ropls	2656
ROSeq	645
ROTS	772
RPA	741
rprimer	571
RProtoBufLib	3476
RpsiXML	472
rpx	1159
Rqc	948
rqt	515
rqubic	499
rRDP	402
Rredland	57
RRHO	551
rrvgo	1266
Rsamtools	29738
rsbml	550
rScudo	591
rsemmed	475
RSeqAn	464
rSFFreader	188
RSNPper	71
Rsubread	2655
RSVSim	731
rSWeeP	505
rTANDEM	238
RTCA	589
RTCGA	1005
RTCGAToolbox	1264
RTN	808
RTNduals	562
RTNsurvival	591
RTools4TB	41
RTopper	775
Rtpca	529
rtracklayer	25022
Rtreemix	436
rTRM	862
rTRMui	623
RUCova	478
runibic	307
Ruuid	112
RUVcorr	594
RUVnormalize	583
RUVSeq	1551
Rvisdiff	475
RVS	530
RWebServices	64
rWikiPathways	855
S4Arrays	51179
S4Cartographer	85
S4Vectors	71329
safe	1355
SAGElyzer	56
sagenhaft	654
SAGx	341
SAIGEgds	544
samExploreR	93
sampleClassifier	523
SamSPECTRAL	618
sangeranalyseR	740
sangerseqR	1207
SanityR	365
SANTA	703
sapFinder	237
saps	47
SARC	119
sarks	521
saseR	449
satuRn	926
savR	172
SBGNview	625
sbgr	19
SBMLR	638
SC3	1125
scafari	511
Scale4C	628
ScaledMatrix	16811
scAlign	123
scanMiR	558
scanMiRApp	586
scAnnotatR	558
SCAN.UPC	826
SCANVIS	458
SCArray	591
SCArray.sat	444
SCATE	124
scater	11534
scatterHatch	415
scBatchQC	92
scBFA	560
SCBN	438
scBubbletree	532
scCB2	545
scCertify	6
scClassifR	60
scClassify	673
sccomp	684
scCompoundDE	80
scConform	291
scDataviz	637
scDblFinder	5191
scDD	805
scDDboost	496
scde	994
scDesign3	498
scDiagnostics	493
scDotPlot	465
scds	1315
scECODA	407
SCFA	492
scFastDE	83
scFeatureFilter	646
scFeatures	561
scfind	89
scGPS	637
scGraphVerse	359
schex	640
scHiCcompare	374
scHOT	625
scider	470
scifer	496
ScISI	432
scLANE	449
scLang	326
scMAGeCK	82
scmap	1049
scMerge	960
scMET	534
scmeth	659
scMitoMut	417
scMultiSim	537
SCnorm	764
scone	785
Sconify	550
SCOPE	583
scoreInvHap	626
scoup	376
scp	703
scPassport	243
scPCA	617
scPipe	691
scQTLtools	412
scran	9110
scrapper	2647
scReClassify	564
scRecover	508
screenCounter	468
ScreenR	447
scRepertoire	1342
scRNAseqApp	531
scruff	722
scry	905
scShapes	376
scsR	212
scTensor	644
scTGIF	648
scTHI	497
scToppR	360
scTreeViz	570
scTypeEval	297
scuttle	13225
scviR	308
SDAMS	530
seahtrue	428
sechm	604
segmenter	605
segmentSeq	904
selectKSigs	457
SELEX	653
SemDist	695
semisup	468
SEMPLR	359
SemSim	64
SEPA	107
SEPIRA	232
seq2pathway	572
seqArchR	209
seqArchRplus	186
SeqArray	1688
seqbias	358
seqCAT	645
seqCNA	260
seqcombo	436
SeqGate	489
SeqGSEA	788
seq.hotSPOT	379
Seqinfo	43319
seqLogo	4286
seqPattern	1535
seqplots	286
seqsetvis	689
SeqSQC	770
Seqtometry	303
seqTools	342
SeqVarTools	1207
SEraster	401
sesame	1498
SETA	411
SEtools	557
sevenbridges	672
sevenC	702
sfi	316
SGCP	300
SGSeq	1017
SharedObject	600
shinybiocloader	294
shinyDSP	429
shinyepico	583
shiny.gosling	372
shinyMethyl	829
shinyTANDEM	168
ShortRead	7612
SIAMCAT	654
SICtools	566
sigaR	228
SigCheck	682
sigFeature	717
SigFuge	418
siggenes	4483
sights	571
signatureSearch	742
signeR	753
signet	70
signifinder	473
sigPathway	365
SigsPack	587
sigsquared	561
sigvar	8
SIM	664
SIMAT	600
SimBindProfiles	308
SimBu	477
SIMD	474
SimFFPE	535
SimiCviz	70
similaRpeak	687
SIMLR	791
simona	1278
simPIC	507
simpleaffy	402
simpleSeg	693
simplifyEnrichment	1680
simulatorAPMS	81
simulatorZ	224
sincell	661
singIST	250
single	191
SingleCellAlleleExperiment	470
SingleCellExperiment	23110
SingleCellSignalR	722
singleCellTK	1000
SingleMoleculeFootprinting	334
SingleR	6419
singscore	2678
SiPSiC	391
SISPA	206
sitadela	515
Site2Target	375
sitePath	528
sizepower	557
SJava	60
sketchR	472
skewr	648
slalom	368
SLGI	426
slingshot	4192
slinky	137
SLqPCR	525
SMAD	463
SMAP	352
smartid	418
SmartPhos	265
SMITE	745
smoothclust	417
smoppix	428
SMTrackR	314
SNAGEE	535
snapCGH	486
snapcount	524
snifter	917
snm	618
SNPchip	367
SNPediaR	458
SNPhood	918
snpMatrix	78
SNPRelate	2523
snpStats	3084
soGGi	605
sojourner	131
SomatiCA	129
SomaticSignatures	806
SOMNiBUS	505
sosta	526
SpaceMarkers	455
SpacePAC	370
SpaceTrooper	491
spacexr	784
spade	122
Spaniel	668
SpaNorm	550
spARI	342
sparrow	821
SparseArray	57080
sparseDOSSA	204
sparseMatrixStats	20442
sparsenetgls	457
SparseSignatures	659
spaSim	526
SpatialArtifacts	385
SpatialCPie	553
spatialdataR	15
spatialDE	610
SpatialDecon	730
SpatialExperiment	9980
SpatialExperimentIO	469
spatialFDA	432
SpatialFeatureExperiment	731
spatialHeatmap	472
SpatialOmicsOverlay	565
spatialSimGP	377
spatzie	197
speckle	1075
specL	691
SpeCond	670
Spectra	4238
SpectralTAD	583
SpectraQL	387
SpectraStash	6
SpectriPy	422
SPEM	596
SPIA	1583
SPIAT	621
SPICEY	381
spicyR	742
SpidermiR	243
SpiecEasi	427
spikeLI	569
spiky	490
spillR	409
spkTools	653
splatter	1278
splicegear	276
SpliceImpactR	310
splicelogic	266
spliceR	218
spliceSites	206
SpliceWiz	737
SplicingFactory	443
SplicingGraphs	886
SplineDV	425
splineTCDiffExpr	7
splineTimeR	632
SPLINTER	681
splots	679
SpNeigh	309
SPONGE	822
spoon	396
SpotClean	574
SPOTlight	942
spotSegmentation	191
SpotSweeper	603
spqn	575
SPsimSeq	564
SQLDataFrame	231
SQUADD	242
squallms	395
sRACIPE	596
SRAdb	1049
sRAP	173
SRGnet	116
srnadiff	662
sscore	398
sscu	611
sSeq	665
ssize	600
sSNAPPY	581
SSPA	366
ssPATHS	548
ssrch	479
ssviz	637
StabMap	448
STADyUM	368
stageR	805
stam	83
STAN	288
standR	676
staRank	274
StarBioTrek	271
staRgate	364
Starr	303
STATegRa	907
StatescopeR	354
Statial	557
statTarget	732
STdeconvolve	152
stepNorm	624
stepwiseCM	140
stJoincount	350
stPipe	465
strandCheckR	611
Streamer	426
STRINGdb	4170
STROMA4	269
struct	677
Structstrings	622
structToolbox	652
StructuralVariantAnnotation	728
SubCellBarCode	573
subSeq	762
SUITOR	417
SummarizedBenchmark	278
SummarizedExperiment	51426
Summix	372
SuperCellCyto	426
supersigs	497
supraHex	497
surfaltr	543
SurfR	431
survClust	363
survcomp	2219
survtype	486
Sushi	323
sva	10538
svaNUMT	552
SVAPLSseq	136
svaRetro	591
SVM2CRM	149
SVMDO	387
SVP	441
SwarnSeq	12
SWATH2stats	612
SwathXtend	366
swfdr	581
SwimR	185
switchBox	541
switchde	589
synapsis	518
synapter	517
synergyfinder	698
SynExtend	552
synlet	538
SynMut	470
syntenet	636
systemPipeR	2170
systemPipeShiny	581
systemPipeTools	523
tadar	476
TADCompare	535
tanggle	534
TAPseq	661
target	627
TargetDecoy	547
TargetScore	634
TargetSearch	639
TarSeqQC	267
TaxSEA	387
TBSignatureProfiler	687
TCC	939
TCGAbiolinks	6553
TCGAbiolinksGUI	147
TCGAutils	1449
TCseq	998
TDARACNE	260
TDbasedUFE	444
TDbasedUFEadv	469
TEKRABber	550
TENET	433
TENxIO	669
tenXplore	667
TEQC	780
terapadog	365
ternarynet	548
terraTCGAdata	443
TFARM	526
TFBSTools	4382
TFEA.ChIP	857
TFHAZ	726
TFutils	822
TiDEomics	125
tidybulk	896
tidyCoverage	494
tidyexposomics	402
tidyFlowCore	387
tidyomics	377
tidyprint	285
tidysbml	332
tidySingleCellExperiment	826
tidySpatialExperiment	541
tidySummarizedExperiment	704
tidytof	76
tigre	787
TileDBArray	531
tilingArray	970
timecourse	881
timeOmics	576
timescape	416
TimeSeriesExperiment	148
TimiRGeN	174
TIN	734
TissueEnrich	766
TitanCNA	451
tkWidgets	2507
tLOH	404
TMixClust	584
TMSig	442
TNBC.CMS	182
TnT	597
TOAST	1221
tofsims	160
tomoda	526
tomoseqr	468
TOP	440
ToPASeq	174
topconfects	706
topdownr	668
topGO	2974
toppgene	178
ToxicoGx	700
TPP	891
TPP2D	583
tpSVG	436
tracktables	759
trackViewer	1444
tradeSeq	2076
TraianProt	80
TrajectoryGeometry	381
TrajectoryUtils	4174
transcriptogramer	747
transcriptR	785
transformGamPoi	539
transite	457
tRanslatome	747
transmogR	459
transomics2cytoscape	460
TransView	547
TraRe	101
traseR	853
Travel	39
traviz	181
TreeAndLeaf	633
treeclimbR	435
treeio	30763
treekoR	615
TreeSummarizedExperiment	3256
TREG	521
trena	292
TReNA	16
Trendy	633
TRESS	554
tricycle	955
TrIdent	331
triform	191
trigger	368
trio	691
triplex	806
tripr	571
tRNA	697
tRNAdbImport	582
tRNAscanImport	637
TRONCO	807
TSAR	404
TSCAN	1148
tscR	130
TSENAT	97
tspair	279
TSRchitect	226
TSSi	207
TSSr	4
ttgsea	403
TTMap	639
TurboNorm	771
TVTB	729
tweeDEseq	682
twilight	793
twoddpcr	662
txcutr	505
txdbmaker	5571
tximeta	2275
tximport	5400
TxRegInfra	93
TypeInfo	325
UCell	3430
UCSC.utils	25756
Ularcirc	647
UMI4Cats	675
uncoverappLib	601
UNDO	691
unifiedWMWqPCR	592
UniProt.ws	1421
Uniquorn	700
universalmotif	1909
updateObject	531
UPDhmm	426
uSORT	682
VAExprs	457
VanillaICE	1049
VarCon	576
variancePartition	2808
VariantAnnotation	9559
VariantExperiment	300
VariantFiltering	936
VariantTools	847
vasp	46
VaSP	647
vbmp	754
VCFArray	624
VDJdive	432
Vega	174
VegaMC	729
velociraptor	651
veloviz	420
VennDetail	632
VERSO	450
vidger	766
viper	1846
virtualArray	57
ViSEAGO	807
VisiumIO	597
visiumStitched	448
vissE	585
VISTA	258
vmrseq	423
Voyager	697
VplotR	676
vsclust	548
vsn	7123
vtpnet	613
vulcan	554
waddR	293
wateRmelon	1483
wavClusteR	751
waveTiling	248
wavFeatExt	244
weaver	554
webbioc	778
weitrix	806
widgetInvoke	32
widgetTools	2392
wiggleplotr	700
wpm	552
wppi	332
Wrench	2421
wSIR	83
XAItest	374
XBSeq	255
xCell2	559
XCIR	64
xcms	3164
xcore	562
XDE	886
XeniumIO	374
xenLite	449
Xeva	585
XINA	530
xmapbridge	578
xmapcore	44
XNAString	227
xps	291
XVector	61699
y2hStat	47
yamss	723
YAPSA	819
yaqcaffy	372
yarn	773
ZarrArray	259
zellkonverter	3980
zenith	654
zFPKM	548
zinbwave	1387
zitools	405
zlibbioc	21220
ZygosityPredictor	456