Package	Download_score
a4	934
a4Base	988
a4Classif	846
a4Core	860
a4Preproc	1004
a4Reporting	709
ABAEnrichment	318
ABarray	991
abseqR	787
ABSSeq	935
acde	1032
ACE	818
aCGH	1322
ACME	1278
ADaCGH2	993
ADAM	706
ADAMgui	668
ADAPT	250
adaptest	108
adductomicsR	508
ADImpute	752
adSplit	1072
adverSCarial	494
Aerith	400
AffiXcan	802
affxparser	3326
affy	10556
affycomp	1338
AffyCompatible	466
affyContam	891
affycoretools	1458
affydata	33
AffyExpress	412
affyILM	889
affyio	10615
affylmGUI	1194
affyPara	435
affypdnn	375
affyPLM	2430
affyQCReport	400
AffyRNADegradation	785
AffyTiling	221
AGDEX	860
aggregateBioVar	787
Agi4x44PreProcess	153
agilp	663
AgiMicroRna	1105
AHMassBank	490
AIMS	1211
airpart	695
alabaster	505
alabaster.base	5782
alabaster.bumpy	496
alabaster.files	500
alabaster.mae	517
alabaster.matrix	5526
alabaster.ranges	5441
alabaster.sce	1830
alabaster.schemas	5297
alabaster.se	5423
alabaster.sfe	269
alabaster.spatial	564
alabaster.string	516
alabaster.vcf	515
ALDEx2	2533
alevinQC	932
AllelicImbalance	1081
AlphaBeta	731
AlphaMissenseR	573
alpine	405
ALPS	118
AlpsNMR	874
alsace	248
altcdfenvs	1112
AMARETTO	860
AMOUNTAIN	739
amplican	1199
ampliQueso	249
AnalysisPageServer	171
anamiR	152
anansi	509
Anaquin	714
ANCOMBC	2999
AneuFinder	584
ANF	687
anglemania	582
animalcules	957
annaffy	1173
AnnBuilder	93
anndataR	1720
annmap	826
annoLinker	387
annotate	22557
AnnotationDbi	47940
AnnotationFilter	12707
AnnotationForge	3131
AnnotationFuncs	309
AnnotationHub	15671
AnnotationHubData	1503
annotationTools	944
annotatr	1482
anota	861
anota2seq	834
antiProfiles	663
AnVIL	1284
AnVILAz	442
AnVILBase	903
AnVILBilling	571
AnVILGCP	480
AnVILPublish	559
AnVILVRS	111
AnVILWorkflow	350
APAlyzer	692
apComplex	1008
apeglm	7715
APL	698
applera	56
appreci8R	856
aroma.light	2480
ArrayExpress	1175
ArrayExpressHTS	301
arrayMagic	159
arrayMvout	1019
arrayQCplot	42
arrayQuality	941
arrayQualityMetrics	1312
ArrayTools	421
ArrayTV	338
ARRmNormalization	713
artMS	767
ASAFE	547
ASEB	686
ASGSCA	733
ASICS	942
asmn	57
ASpediaFI	223
ASpli	1116
AssessORF	883
ASSET	793
ASSIGN	941
assorthead	19436
ASURAT	775
asuri	409
ATACCoGAPS	154
atacInferCnv	328
ATACseqQC	1149
ATACseqTFEA	761
atena	716
AtlasRDF	115
atSNP	796
attract	1236
AUCell	4609
augere.core	131
augere.de	133
augere.gsea	140
augere.screen	112
augere.solo	147
autonomics	836
Autotuner	114
AWAggregator	366
AWFisher	680
awst	619
BaalChIP	769
BAC	403
bacon	939
BADER	682
BadRegionFinder	815
BAGS	647
ballgown	1843
bambu	1066
BamScale	140
bamsignals	2201
BANDITS	778
bandle	774
Banksy	1165
banocc	564
barbieQ	541
barcodetrackR	318
barmixR	94
basecallQC	583
BaseSpaceR	811
Basic4Cseq	895
BASiCS	1206
BASiCStan	574
BasicSTARRseq	712
basilisk	5629
basilisk.utils	3386
batchCorr	426
BatChef	297
batchelor	5719
BatchQC	817
BatchSVG	457
BatchVaria	8
Battlefield	415
BayesKnockdown	646
BayesPeak	339
BayesSpace	1303
bayNorm	773
baySeq	1364
BBCAnalyzer	954
BCRANK	1137
bcSeq	585
BDMMAcorrect	254
beachmat	22120
beachmat.hdf5	656
beachmat.tiledb	316
beadarray	1740
beadarraySNP	583
BeadDataPackR	1182
BeadExplorer	44
BEARscc	316
BEAT	1068
BEclear	746
bedbaser	445
beer	509
benchdamic	865
BenchHub	153
BERT	464
betaHMM	583
betr	256
betterChromVAR	332
bettr	542
BG2	498
bgafun	343
BgeeCall	961
BgeeDB	819
BGmix	357
bgx	739
BHC	376
BicARE	964
BiFET	653
BiGGR	433
bigmelon	897
bigmemoryExtras	201
bigPint	281
bim	49
BindingSiteFinder	799
bioassayR	844
Biobase	64555
biobroom	890
biobtreeR	535
Bioc.gff	404
bioCancer	1112
BioCartaImage	526
BiocAzul	308
BiocBaseUtils	15511
BiocBook	522
BiocBuildReporter	319
BiocCaseStudies	418
BiocCheck	3359
biocDatasets	41
BiocDockerManager	160
BiocDuckDB	19
BiocFHIR	648
BiocFileCache	29415
BiocGenerics	74573
biocGraph	1035
BiocHail	336
BiocHubsShiny	561
BiocInstaller	355
BiocIO	22898
BiocMaintainerApp	307
biocmake	7907
BiocNeighbors	16619
BiocOncoTK	484
BioCor	831
BiocParallel	59780
BiocPkgDash	339
BiocPkgTools	952
biocroxytest	424
BiocSet	880
BiocSingular	18880
BiocSklearn	649
BiocStyle	8690
biocthis	1171
BiocVersion	78553
biocViews	5926
BiocWorkflowTools	763
biodb	785
biodbChebi	333
biodbExpasy	151
biodbHmdb	240
biodbKegg	199
biodbLipidmaps	161
biodbMirbase	129
biodbNcbi	228
biodbNci	219
biodbUniprot	234
bioDist	999
BioGA	435
biomaRt	24570
BioMedR	61
biomformat	7837
BioMM	256
BioMVCClass	878
biomvRCNS	913
BioNAR	690
BioNERO	911
BioNet	1261
BioNetStat	307
BioPlex	61
BioQC	1018
BioSeqClass	406
biosigner	867
Biostrings	58962
biosvd	255
BioTIP	882
biotmle	793
biovizBase	6486
BiRewire	659
birta	293
birte	194
biscuiteer	989
BiSeq	1050
BitSeq	525
blacksheepr	827
blase	579
blima	867
BLMA	884
BloodGen3Module	626
bluster	10903
bnbc	978
bnem	736
BOBaFIT	654
borealis	620
BPRMeth	606
BRAIN	1013
brainflowprobes	279
brainImageR	53
BrainSABER	164
BrainStars	301
branchpointer	987
breakpointR	785
BreastSubtypeR	555
brendaDb	687
BREW3R.r	537
BRGenomics	471
bridge	422
BridgeDbR	904
broadSeq	553
BrowserViz	777
BrowserVizDemo	61
BSgenome	14375
BSgenomeForge	636
bsseq	2717
BubbleTree	516
BufferedMatrix	779
BufferedMatrixMethods	740
bugsigdbr	744
BulkSignalR	679
BUMHMM	791
bumphunter	4267
BumpyMatrix	1277
BUS	882
BUScorrect	825
BUSpaRse	916
BUSseq	706
CaDrA	521
CAEN	542
CAFE	1227
CAGEfightR	1053
cageminer	682
CAGEr	1109
CALIB	388
CalibraCurve	425
calm	495
CAMERA	1548
CAMTHC	127
CaMutQC	603
canceR	764
cancerclass	1113
CancerInSilico	289
CancerMutationAnalysis	424
CancerSubtypes	395
CAnD	274
caOmicsV	340
cardelino	743
Cardinal	1405
CardinalIO	720
CARDspa	633
carnation	330
CARNIVAL	753
casper	909
CATALYST	1264
Category	2355
categoryCompare	1123
CatsCradle	578
CausalR	721
cbaf	747
CBEA	231
cBioPortalData	1242
CBN2Path	357
CBNplot	649
cbpManager	685
CCAFE	566
ccfindR	616
ccImpute	621
ccmap	389
CCPlotR	570
CCPROMISE	736
ccrepe	656
CDI	621
celaref	896
celda	2337
CellaRepertorium	278
CellBarcode	777
cellbaseR	805
CellBench	924
cellGrowth	252
cellHTS	392
cellHTS2	777
CelliD	690
cellity	861
CellMapper	751
CellMentor	358
cellmig	495
cellmigRation	588
CellMixS	989
cellNexus	98
CellNOptR	1043
cellscape	553
CellScore	407
CellTrails	867
cellTree	373
cellxgenedp	592
CEMiTool	949
censcyt	646
Cepo	828
ceRNAnetsim	586
CeTF	894
CexoR	1026
CFAssay	581
cfdnakit	654
cfDNAPro	759
cfTools	322
CGEN	713
CGHbase	1290
CGHcall	1230
cghMCR	947
CGHnormaliter	912
CGHregions	868
CGRphylo2	118
ChAMP	1643
CHARGE	111
charm	355
ChemmineOB	1046
ChemmineR	1853
CHETAH	800
chevreulPlot	405
chevreulProcess	552
chevreulShiny	592
ChIC	181
Chicago	869
chihaya	712
chimera	408
chimeraviz	1056
ChIPanalyser	871
ChIPComp	677
chipenrich	997
ChIPexoQual	936
ChIPpeakAnno	1898
ChIPQC	1220
ChIPseeker	3961
chipseq	1625
ChIPseqR	1062
ChIPSeqSpike	174
ChIPsim	986
ChIPXpress	700
chopsticks	895
chroGPS	354
Chromatograms	463
chromDraw	700
ChromHeatMap	971
ChromoViz	94
chromPlot	879
ChromSCape	955
chromstaR	670
chromswitch	324
chromVAR	2255
CHRONOS	710
cicero	1076
cigarillo	17589
CIMICE	621
CINdex	466
circRNAprofiler	949
CircSeqAlignTk	540
cisPath	366
CiteFuse	845
CLAMP	136
ClassifyR	1188
cleanUpdTSeq	1233
CleanUpRNAseq	596
cleaver	1037
clevRvis	553
clippda	932
clipper	1100
cliProfiler	662
cliqueMS	689
Clomial	680
Clonality	391
ClonalSim	348
clonotypeR	283
clst	790
clstutils	833
CluMSID	723
ClustAll	539
clustComp	702
clusterExperiment	1149
ClusterFoldSimilarity	527
ClusterGVis	479
ClusterJudge	752
clusterProfiler	29661
clusterSeq	773
ClusterSignificance	723
clusterStab	893
clustifyr	947
ClustIRR	568
clustSIGNAL	489
CMA	1039
cmapR	1230
CMEnt	8
cn.farms	1088
cn.mops	1255
CNAnorm	807
CNEr	2692
CNORdt	691
CNORfeeder	945
CNORfuzzy	858
CNORode	776
CNPBayes	223
CNTools	909
CNVfilteR	767
CNVgears	201
cnvGSA	802
CNViz	558
CNVMetrics	699
CNVPanelizer	847
CNVRanger	845
CNVrd2	1001
CNVtools	254
cobindR	299
CoCiteStats	803
COCOA	965
codelink	1295
CODEX	964
coexnet	245
CoGAPS	959
cogena	1090
cogeqc	720
Cogito	605
coGPS	820
COHCAP	342
cola	1079
comapr	613
combi	708
coMET	475
coMethDMR	741
compartmap	372
COMPASS	770
compcodeR	1103
CompensAID	371
compEpiTools	1049
CompGO	284
ComplexHeatmap	23951
CompoundDb	1107
ComPrAn	518
compSPOT	441
CONCERTDR	22
conclus	131
concordexR	620
condcomp	43
condiments	795
CONFESS	916
consensus	658
ConsensusClusterPlus	3964
consensusDE	473
consensusOV	930
consensusSeekeR	868
consICA	682
CONSTANd	628
contiBAIT	553
conumee	933
convert	981
copa	871
COPDSexualDimorphism	58
copynumber	567
CopyNumber450k	127
CopyNumberPlots	829
CopywriteR	392
Coralysis	467
coRdon	993
CoRegFlux	104
CoRegNet	469
CoreGx	1155
Cormotif	823
CorMut	212
coRNAi	230
CorNetto	21
corral	727
CORREP	398
coseq	912
CoSIA	584
cosmiq	792
cosmo	162
cosmoGUI	110
cosmosR	683
COSNet	715
COTAN	708
CountClust	273
countsimQC	989
covEB	682
CoverageView	848
covRNA	757
CPSM	515
cpvSNP	932
cqn	1086
CrcBiomeScreen	348
CRImage	1202
CRISPRball	516
crisprBase	785
crisprBowtie	686
crisprBwa	473
crisprDesign	814
crisprScore	828
CRISPRseek	952
crisprseekplus	337
crisprShiny	516
CrispRVariants	1081
crisprVerse	557
crisprViz	747
crlmm	1504
CrossICC	78
crossmeta	472
crumblr	493
crupR	557
CSAR	906
csaw	1535
csdR	522
CSOA	413
CSSP	301
CSSQ	753
ctc	979
CTdata	707
CTDquerier	981
ctdR	13
CTexploreR	675
ctgGEM	146
cTRAP	975
ctsGE	786
CTSV	549
cummeRbund	815
CuratedAtlasQueryR	423
customCMPdb	641
customProDB	818
CVE	174
cyanoFilter	690
cycle	860
cydar	901
CyFj11	11
cypress	575
CySA	31
CytoDx	612
cytofast	114
cytofkit	198
CyTOFpower	597
cytofQC	565
CytoGLMM	602
cytoKernel	641
cytolib	3819
cytomapper	1183
CytoMDS	586
cytoMEM	610
CytoML	1603
CytoPipeline	661
CytoPipelineGUI	521
CytoTree	131
cytoviewer	704
dada2	4205
dagLogo	1127
daMA	938
DAMEfinder	935
damidBind	461
DaMiRseq	1054
Damsel	582
dandelionR	430
DAPAR	985
DaparToolshed	121
dar	582
DART	921
DASC	25
DASiR	140
dasper	177
DAssemble	93
DAVIDQuery	164
daVis	144
DBChIP	350
dbSequence	101
dcanr	906
DCATS	542
dce	344
dcGSA	599
DChIPRep	272
ddCt	969
ddgraph	200
ddPCRclust	726
dearseq	771
debCAM	430
debrowser	928
decemedip	385
DECIPHER	4882
deco	279
DEComplexDisease	260
decompTumor2Sig	756
DeconRNASeq	877
decontam	3008
decontX	1212
DeconvoBuddies	599
deconvR	824
decoupleR	3633
DEDS	443
DeeDeeExperiment	548
DeepBlueR	371
DeepPINCS	582
deepSNV	1286
DeepTarget	526
DEFormats	999
DegCre	547
DegNorm	804
DEGraph	616
DEGreport	1461
DEGseq	1033
DelayedArray	57500
DelayedDataFrame	748
DelayedMatrixStats	19969
DelayedRandomArray	590
DelayedTensor	674
DELocal	614
deltaCaptureC	652
deltaGseg	712
DeMAND	546
DeMixT	869
demuxmix	629
demuxSNP	629
DenoIST	393
densvis	1149
DEP	1163
DepecheR	733
DepInfeR	619
DeProViR	54
DEqMS	1053
derfinder	1535
derfinderHelper	1195
derfinderPlot	1082
DEScan2	977
DESeq	817
DESeq2	32071
DEsingle	778
DESpace	851
destiny	2015
DEsubs	970
DEWSeq	855
DExMA	671
DEXSeq	2836
dexus	338
DFP	898
DFplyr	501
DIAlignR	260
DiffBind	2490
diffcoexp	678
diffcyt	1151
DifferentialRegulation	677
diffGeneAnalysis	672
diffHic	1158
DiffLogo	723
diffloop	387
diffuStats	729
diffUTR	748
diggit	725
Dino	696
dinoR	554
DiPPER	9
dir.expiry	13776
Director	262
DirichletMultinomial	6490
discordant	736
DiscoRhythm	825
distinct	843
dittoSeq	1831
divergence	679
dks	648
DMCFB	751
DMCHMM	779
dmGsea	483
DMRcaller	1065
DMRcate	1838
DMRforPairs	426
DMRScan	963
dmrseq	1200
DNABarcodeCompatibility	558
DNABarcodes	759
DNAcopy	5054
DNAcycP2	475
dnaEPICO	207
DNAfusion	795
DNaseR	81
DNAshapeR	976
DNEA	467
domainsignatures	238
dominatR	399
DominoEffect	764
dominoSignal	555
doppelgangR	863
DOQTL	293
Doscheda	920
DOSE	28872
doseR	796
DOtools	424
DOTSeq	417
doubletrouble	739
dpeak	201
drawProteins	756
dreamlet	911
DRIMSeq	1198
DriverNet	692
DropletUtils	4106
drugfindR	390
drugTargetInteractions	609
DrugVsDisease	908
dSimer	194
DspikeIn	545
DSS	1702
dStruct	604
DTA	727
dualKS	398
DuckDBArray	48
DuckDBDataFrame	45
DuckDBGRanges	49
DuckDBSpatial	37
Dune	581
DupChecker	171
DuplexDiscovereR	497
dupRadar	814
dyebias	1035
DynDoc	2513
easier	813
EasyCellType	658
easylift	547
EasyqpcR	306
easyreporting	734
easyRNASeq	1017
EBarrays	1284
EBcoexpress	909
EBImage	4237
EBSEA	638
EBSeq	1143
EBSeqHMM	326
ecolitk	1087
EDASeq	2602
edd	170
EDDA	284
edge	893
edgeR	32392
EDIRquery	536
eds	729
eegc	405
EGAD	743
EGSEA	1091
eiR	796
eisa	489
eisaR	854
ELBOW	289
ELMER	853
ELViS	517
EMDomics	781
EMMA	138
EmpiricalBrownsMethod	680
EMTscore	135
ENCODExplorer	228
EnhancedVolcano	7620
enhancerHomologSearch	722
EnMCB	783
ENmix	1085
EnrichDO	548
EnrichedHeatmap	2001
EnrichmentBrowser	1432
enrichplot	30369
enrichTF	288
enrichViewNet	595
ensembldb	10999
ensemblVEP	382
ENVISIONQuery	258
epialleleR	770
EpiCompare	703
epidecodeR	668
EpiDISH	1793
epigenomix	963
epigraHMM	869
epihet	193
EpiMix	734
epimutacions	731
epiNEM	853
EpipwR	377
epiregulon	543
epiregulon.extra	586
epiRomics	301
epiSeeker	417
epistack	769
epistasisGA	600
EpiTxDb	794
epivizr	1117
epivizrChart	981
epivizrData	902
epivizrServer	725
epivizrStandalone	803
erccdashboard	1031
erma	537
ERSSA	816
esATAC	1164
escape	1108
escheR	794
esetVis	909
eudysbiome	964
evaluomeR	729
EventPointer	868
EWCE	971
ExCluster	559
ExiMiR	992
exomeCopy	692
exomePeak	344
exomePeak2	342
exonmap	104
ExperimentHub	11146
ExperimentHubData	1243
ExperimentSubset	689
explorase	253
ExploreModelMatrix	859
exploreSE	45
ExpoRiskR	314
ExpressionAtlas	826
ExpressionView	371
exprExternal	41
externalVector	105
extraChIPs	804
fabia	970
facopy	252
factDesign	935
factR	586
faers	657
FamAgg	839
famat	800
Fancy	32
farms	483
fastLiquidAssociation	772
FastqCleaner	910
fastRanges	404
fastreeR	641
fastseg	1884
fbat	112
FCBF	308
fCCAC	985
fCI	740
fcoex	245
fcScan	658
fdrame	774
FEAST	899
FeatSeekR	495
fedup	659
FELLA	1006
FEM	248
fenr	566
ffpe	899
fgga	661
FGNet	991
fgsea	28660
FilterFFPE	739
findIPs	537
FindIT2	755
FindMyFriends	296
FinfoMDS	361
FISHalyseR	643
fishash	70
fishpond	1363
FitHiC	511
flagme	814
FLAMES	786
flipflop	242
flowAI	1301
flowBeads	891
flowBin	848
flowcatchR	1148
flowCHIC	862
flowCL	309
flowClean	1008
flowClust	2265
flowCore	4650
flowCut	922
flowCyBar	610
flowDensity	1125
flowFit	245
flowFlowJo	175
flowFP	1309
flowGate	594
flowGraph	642
flowMap	447
flowMatch	1021
flowMeans	1147
flowMerge	930
flowPeaks	913
flowPhyto	147
flowPloidy	728
flowPlots	661
flowQ	326
flowQB	250
FlowRepositoryR	238
FlowSOM	2139
flowSpecs	870
flowSpy	108
flowStats	1763
flowTime	820
flowTrans	858
flowType	349
flowUtils	470
flowViz	2371
flowVS	971
flowWorkspace	2804
fmcsR	1086
fmrs	529
fobitools	753
focalCall	214
FoldGO	306
FourCSeq	375
fourSynergy	412
fRagmentomics	409
fraq	319
FRASER	967
frenchFISH	423
FRGEpistasis	582
frma	1066
frmaTools	879
FScanR	154
FunChIP	340
FunciSNP	390
funOmics	406
funtooNorm	805
FuseSOM	670
G4SNVHunter	503
GA4GHclient	756
GA4GHshiny	708
gaga	959
gage	1929
gaggle	488
gaia	305
GAPGOM	183
GAprediction	583
garfield	556
GARS	708
GateFinder	686
gatom	623
gaucho	169
GBScleanR	613
gcapc	1048
gcatest	696
gCMAP	299
gCMAPWeb	331
GCPtools	659
gCrisprTools	1174
gcrma	2285
GCSConnection	95
GCSFilesystem	80
GCSscore	281
GDCRNATools	1096
gDNAx	612
gDR	469
gDRcore	535
gDRimport	626
gDRstyle	564
gDRutils	508
GDSAnnotator	4
GDSArray	750
gdscloud	19
gdsfmt	3350
GeDi	471
geecc	234
GEM	685
gemini	622
gemma.R	685
genArise	799
genbankr	468
GENE.E	133
gene2pathway	107
GeneAccord	230
GeneAnswers	393
geneAttribution	750
GeneBreak	971
geneClassifiers	758
geneClusterPattern	20
GeneExpressionSignature	1012
genefilter	15339
genefu	1619
GeneGA	449
GeneGeneInteR	423
GeneGroupAnalysis	58
GeneMeta	1238
GeneNetworkBuilder	1215
GeneOverlap	1701
geneplast	899
geneplotter	4911
GeneR	135
geneRecommender	820
GeneRegionScan	1389
GeneRfold	45
geneRxCluster	763
GeneSelectMMD	905
GeneSelector	315
GENESIS	1444
GeneSpring	121
GeneStructureTools	822
geNetClassifier	1043
GeneticsBase	106
GeneticsDesign	256
GeneticsPed	683
GeneTonic	1022
GeneTraffic	108
GeneTS	83
geneXtendeR	854
GENIE3	2253
genoCN	429
GenoGAM	327
genomation	1815
GenomAutomorphism	671
GenomeBase	37
GenomeGraphs	374
GenomeInfoDb	37356
genomeIntervals	1004
genomes	679
GenomicAlignments	27006
GenomicCoordinates	307
GenomicDataCommons	1836
GenomicDistributions	891
GenomicFeatures	19217
GenomicFiles	1762
genomicInstability	627
GenomicInteractionNodes	590
GenomicInteractions	1436
GenomicOZone	733
GenomicPlot	656
GenomicRanges	56973
GenomicScores	1484
GenomicSuperSignature	921
GenomicTuples	925
Genominator	377
genoset	378
genotypeeval	323
GenoView	89
genphen	270
GenProSeq	461
GenRank	147
GenVisR	1199
GeoDiff	745
GEOexplorer	310
GEOfastq	416
GEOmetadb	1029
geomeTriD	554
GeomxTools	1009
GEOquery	15960
GEOsearch	106
GEOsubmission	794
GeoTcgaData	692
gep2pep	618
gesel	107
gespeR	455
getDEE2	541
geva	649
GEWIST	621
GExPipe	147
geyser	462
gff3Plotter	48
gg4way	597
GGBase	462
ggbio	3264
ggcyto	2084
ggkegg	943
ggmanh	753
ggmsa	1230
GGPA	667
ggsc	571
ggseqalign	436
ggspavis	1145
GGtools	536
ggtree	34372
ggtreeDendro	503
ggtreeExtra	2681
ggtreeSpace	443
GIGSEA	579
ginmappeR	446
gINTomics	550
girafe	809
GISPA	325
GLAD	1085
GladiaTOX	714
Glimma	1870
glmGamPoi	7000
glmSparseNet	869
GlobalAncova	2062
globalSeq	705
globaltest	2841
GloScope	596
glycoTraitR	342
gmapR	712
GmicR	776
gmoviz	918
GMRP	827
GNET2	484
GNOSIS	576
GOaGO	391
goatea	479
goCluster	40
GOexpress	1045
GOfan	331
GOfuncR	885
GOFunction	355
GoogleGenomics	180
GOpro	894
goProfiles	1065
GOSemSim	27495
goseq	2404
GOSim	471
goSorensen	580
goSTAG	913
GOstats	2436
GOsummaries	422
GOTHiC	1161
goTools	881
GPA	504
gpart	241
GPlinksR	87
gpls	1045
gprege	305
gpuMagic	334
gQTLBase	274
gQTLstats	277
GrafGen	583
gramm4R	79
GRaNIE	1024
granulator	279
graper	646
graph	25654
GraphAlignment	683
GraphAT	1023
GraphExperiment	386
graphite	7011
GraphPAC	446
grayleafspotr	13
GRENITS	667
GreyListChIP	1941
GRmetrics	866
groHMM	1148
growkar	27
GRridge	335
GSABenchmark	319
GSALightning	703
GSAR	1033
GSCA	819
gscreend	758
GSEABase	13343
GSEABenchmarkeR	815
GSEAlens	74
GSEAlm	1052
GSEAmining	625
gsean	718
GSgalgoR	680
GSReg	805
GSRI	936
GSVA	12757
gtrellis	966
GUIDEseq	1255
Guitar	1019
gVenn	429
Gviz	4686
GWAS.BAYES	669
gwascat	1475
GWASTools	1634
gwasurvivr	717
GWENA	815
gypsum	5226
h5mread	15167
h5vc	1295
hammers	351
hapFabia	886
Harman	975
HarmonizR	495
Harshlight	620
hca	310
HCABrowser	117
HCAExplorer	73
HCAMatrixBrowser	42
HCsnip	222
HDF5Array	20536
HDTD	581
hdxmsqc	623
heatmaps	1245
Heatplus	1146
HelloRanges	923
HELP	932
HEM	931
hermes	826
HERON	570
Herper	456
hexbin	171
HGC	549
hiAnnotator	527
HIBAG	901
HicAggR	596
HiCaptuRe	445
HiCBricks	1026
HiCcompare	1150
HiCDCPlus	722
HiCDOC	719
HiCExperiment	705
HiContacts	858
HiCool	345
HiCParser	431
HiCPotts	397
hicrep	103
hicVennDiagram	538
hierGWAS	717
hierinf	457
HilbertCurve	1004
HilbertVis	1004
HilbertVisGUI	393
HiLDA	846
hipathia	1081
HIPPO	592
hiReadsProcessor	485
HIREewas	669
HiSpaR	271
HistoImagePlot	375
HiTC	1212
hmdbQuery	584
HMMcopy	1098
HoloFoodR	536
hoodscanR	642
hopach	1336
HPAanalyze	888
hpar	1382
HPAStainR	115
HPiP	693
HTqPCR	1121
HTSanalyzeR	386
HTSeqGenie	235
htSeqTools	345
HTSFilter	1127
HuBMAPR	477
HubPub	1102
HumanTranscriptomeCompendium	322
hummingbird	658
HVP	419
HybridExpress	562
HybridMTest	788
hypeR	611
hyperdraw	848
hypergraph	933
iASeq	600
iasva	722
iBBiG	593
Ibex	417
ibh	703
iBMQ	563
iCARE	722
Icens	1190
icetea	838
iCheck	801
iChip	935
iClusterPlus	918
iCNV	678
iCOBRA	1181
ideal	1134
IdeoViz	871
idiogram	1216
IdMappingAnalysis	308
IdMappingRetrieval	254
idpr	753
idr2d	762
IFAA	455
iFlow	68
igblastr	869
iGC	789
IgGeneUsage	698
igvR	1039
igvShiny	628
IHW	1931
illuminaio	4419
ILoReg	749
ImageArray	401
imageFeatureTCGA	302
imageHTS	508
imageTCGA	435
imageTCGAutils	377
IMAS	583
imcRtools	1064
Imetagene	229
IMMAN	585
immApex	932
immGLIPH	120
immLynx	339
immReferent	455
ImmuneSpaceR	352
immunoClust	917
immunogenViewer	416
immunotation	577
iModMix	353
IMPCdata	542
ImpulseDE	115
ImpulseDE2	153
impute	14554
INDEED	526
iNETgrate	645
infercnv	2708
infinityFlow	674
Informeasure	537
InPAS	1145
INPower	702
inSilicoDb	200
inSilicoMerging	149
INSPEcT	1212
INTACT	524
InTAD	814
intansv	957
interacCircos	488
InteractionSet	2504
InteractiveComplexHeatmap	1087
interactiveDisplay	895
interactiveDisplayBase	2987
InterCellar	730
IntEREst	949
InterMineR	430
IntOMICS	97
IntramiRExploreR	706
IntrinsicScan	8
inveRsion	275
IONiseR	998
iontree	178
iPAC	497
iPath	561
ipdDb	701
IPO	792
IPPD	285
IRanges	68817
IRISFGM	211
IrisSpatialFeatures	53
ISAnalytics	838
iscream	496
iSEE	1237
iSEEde	615
iSEEfier	503
iSEEhex	622
iSEEhub	733
iSEEid	128
iSEEindex	565
iSEEpathways	592
iSEEtree	607
iSEEu	828
iSeq	715
ISLET	636
islify	444
iSNetwork	60
isobar	1143
IsoBayes	572
IsoCorrectoR	674
IsoCorrectoRGUI	577
IsoformSwitchAnalyzeR	1421
IsoGeneGUI	487
ISoLDE	589
isomiRs	1029
iSPlot	59
ITALICS	910
iterativeBMA	781
iterativeBMAsurv	656
iterClust	262
iteremoval	179
IVAS	898
ivygapSE	669
IWTomics	775
JASPAR2018	29
jazzPanda	607
jmosaics	145
joda	289
JunctionSeq	224
jvecfor	275
karioCaS	8
karyoploteR	1962
katdetectr	681
KBoost	457
KCsmart	1027
kebabs	1079
KEGGemUP	68
KEGGgraph	6806
KEGGlincs	851
keggorth	62
keggorthology	1109
KEGGprofile	295
KEGGREST	45885
KEGGSOAP	150
kimod	154
KinSwingR	648
kissDE	743
kmcut	470
KnowSeq	742
knowYourCG	389
koinar	467
LACE	840
LACHESIS	447
lantern	0
lapmix	521
LBE	944
lcmsPlot	382
ldblock	765
LEA	1407
leapR	314
LedPred	618
lefser	1301
lemur	670
les	881
levi	647
lfa	724
Lheuristic	383
limma	45965
limmaGUI	1164
limpa	545
limpca	579
LimROTS	497
LINC	206
LineagePulse	280
lineagespot	542
LinkHD	706
linkSet	208
Linnorm	1087
LinTInd	325
lionessR	831
LIPIDIFy	15
lipidr	838
LipidTrend	376
LiquidAssociation	812
lisaClust	779
lmdme	827
LMGene	422
lncRna	341
LOBSTAHS	740
loci2path	736
logicFS	877
logitT	429
Logolas	155
lol	211
LOLA	1039
looking4clusters	416
LoomExperiment	1110
LowMACA	344
LPE	855
LPEadj	431
lpNet	689
lpsymphony	2009
LRBaseDbi	698
LRcell	677
LRDE	268
lumi	2453
lute	147
LVSmiRNA	322
LymphoSeq	854
M3C	1043
M3D	277
M3Drop	1016
m6Aboost	662
maanova	541
Maaslin2	1690
maaslin3	792
Macarron	550
macat	628
maCorrPlot	821
MACPET	231
MACSQuantifyR	628
MACSr	646
maDB	185
made4	1279
MADSEQ	554
maftools	3522
MAGAR	667
MAGeCKFlute	416
magpie	661
magrene	606
MAI	658
maigesPack	617
MAIT	756
makecdfenv	1320
makePlatformDesign	75
MANOR	855
manta	336
MantelCorr	759
MAPFX	560
mAPKL	410
maPredictDSC	716
mapscape	674
mariner	557
markeR	496
marr	696
marray	3310
martini	708
maser	961
maSigPro	1272
maskBAD	870
MassArray	684
massiR	901
MassSpecWavelet	3096
MAST	3740
mastR	754
matchBox	642
matchprobes	136
MatrixGenerics	52710
MatrixQCvis	786
MatrixRider	834
matter	1168
MaxContrastProjection	133
MBAmethyl	556
MBASED	887
MBCB	713
MBECS	626
mbkmeans	1401
mbOmic	84
mBPCR	948
MBQN	669
mbQTL	502
MBttest	831
mcaGUI	300
MCbiclust	1077
MCRestimate	317
mCSEA	950
mdgsa	310
mdp	739
mdqc	794
MDSvis	316
MDTS	637
MEAL	1002
MeasurementError.cor	654
MEAT	937
MEB	728
MEDIPS	1093
MEDME	889
megadepth	688
MEIGOR	787
Melissa	499
MeLSI	318
memes	799
MergeMaid	422
Mergeomics	816
MeSHDbi	975
meshes	861
meshr	1047
MeSHSim	97
MesKit	873
messina	826
metaArray	413
Metab	402
metabCombiner	733
metabinR	664
MetaboAnnotation	849
MetaboAnnotatoR	327
MetaboCoreUtils	3939
MetaboDynamics	500
metabolomicsWorkbenchR	767
metabom8	387
metabomxtr	770
MetaboSignal	984
metaCCA	602
MetaCyto	687
MetaDICT	421
metagene	613
metagene2	947
metagenomeFeatures	283
metagenomeSeq	2924
MetaGxOvarian	20
metahdep	658
metaMS	1015
MetaNeighbor	565
MetaPathNet	88
MetaPhOR	630
metapod	9270
metapone	698
MetaProViz	392
metaSeq	937
metaseqR	380
metaseqR2	925
metavizr	293
MetaVolcanoR	224
metaX	59
MetCirc	807
MethCP	215
methimpute	837
methInheritSim	794
methodical	526
MethPed	1159
MethReg	690
methrix	945
MethTargetedNGS	698
methVisual	317
methyAnalysis	410
MethylAid	1099
methylCC	973
methylclock	844
methylGSA	954
methyLImp2	513
methylInheritance	886
methylKit	1833
MethylMix	995
methylMnM	1135
methylPipe	1006
methylscaper	771
MethylSeekR	1093
methylSig	747
methylumi	2825
methyvim	165
MetID	625
MetMashR	563
MetNet	964
mfa	482
Mfuzz	2352
MGFM	936
MGFR	782
MGnifyR	634
mgsa	806
mia	2985
miaDash	472
miaSim	642
miaTime	583
miaViz	1128
MiChip	857
microbiome	3109
microbiomeDASim	627
microbiomeExplorer	741
microbiomeMarker	563
MicrobiomeProfiler	604
MicrobiotaProcess	1199
microRNA	1707
microSTASIS	161
MICSQTL	587
midasHLA	579
MIGSA	334
miloR	2130
mimager	816
MIMOSA	356
mina	625
MineICA	770
minet	1542
minfi	4041
MinimumDistance	1160
MiPP	895
miQC	863
MIRA	894
MiRaGE	1140
miRBaseConverter	922
miRcomp	977
mirIntegrator	941
MIRit	589
miRLAB	876
miRmine	406
miRNAmeConverter	700
miRNApath	734
miRNAtap	923
miRSM	860
miRsponge	95
miRspongeR	740
Mirsynergy	225
mirTarRnaSeq	784
missMethyl	1987
missRows	709
mist	446
mistyR	703
mitch	651
mitoClone2	674
mitology	542
mitoODE	208
mixOmics	5370
MLInterfaces	1628
mlm4omics	58
MLP	1190
MLSeq	940
MMAPPR2	161
MMDiff	193
MMDiff2	981
mmgmos	58
mmnet	155
MmPalateMiRNA	333
MMUPHin	838
mnem	933
moanin	574
mobileRNA	546
MobilityTransformR	145
MODA	669
ModCon	504
Modstrings	829
MOFA	118
MOFA2	1966
MOGAMUN	562
mogsa	1031
MoleculeExperiment	542
MOMA	865
monaLisa	1031
monocle	4485
Moonlight2R	691
MoonlightR	1047
MoPS	222
mosaics	1146
mosbi	490
MOSClip	544
mosdef	835
MOSim	996
Motif2Site	704
motifbreakR	875
motifcounter	529
MotifDb	1944
motifmatchr	2667
MotifPeeker	409
motifRG	318
motifStack	1782
motifTestR	578
MotIV	396
MouseFM	647
MPAC	441
MPFE	559
mpra	946
MPRAnalyze	682
MQmetrics	192
mQTL.NMR	192
msa	2972
MSA2dist	678
MsBackendMassbank	643
MsBackendMassIVE	83
MsBackendMetaboLights	444
MsBackendMetabolomicsWorkbench	79
MsBackendMgf	1339
MsBackendMsp	887
MsBackendParquet	9
MsBackendRawFileReader	628
MsBackendSql	622
MsCoreUtils	5024
MsDataHub	694
MSEADbi	50
MsExperiment	2287
MsFeatures	2505
msgbsR	745
MSGFgui	295
MSGFplus	236
msImpute	729
mslp	422
msmsEDA	888
msmsTests	930
MSnbase	5521
MSnID	1236
mspms	574
MSPrep	525
msPurity	802
msqrob2	992
MsQuality	675
MsStash	91
MSstats	1585
MSstatsBig	449
MSstatsBioNet	463
MSstatsConvert	1194
MSstatsLiP	740
MSstatsLOBD	530
MSstatsPTM	921
MSstatsQC	758
MSstatsQCgui	516
MSstatsResponse	485
MSstatsSampleSize	249
MSstatsShiny	611
MSstatsTMT	1043
MSstatsTMTPTM	63
MSTree	91
MTseeker	88
MuData	689
Mulcom	899
MultiAssayExperiment	9522
MultiAssaySpatialExperiment	28
MultiBaC	628
multiClust	873
multicrispr	786
MultiDataSet	2832
multiGSEA	758
multiHiCcompare	1026
MultiMed	727
multiMiR	1569
MultimodalExperiment	667
MultiOmicsBridge	145
multiOmicsViz	338
MultipleAlignment	155
multipletR	13
multipointR	84
MultiRNAflow	633
multiscan	869
multiSight	176
multistateQTL	498
multiWGCNA	619
multtest	14457
mumosa	719
MungeSumstats	1219
muscat	1936
muscle	1065
musicatk	872
MutationalPatterns	1302
mutscan	487
MutSeqR	430
MVCClass	860
mvGST	190
MWASTools	939
mygene	1064
myvariant	830
mzID	4532
mzR	5638
NADfinder	1121
NanoMethViz	818
NanoStringDiff	764
NanoStringNCTools	1136
NanoStringQCPro	348
nanotatoR	261
NanoTube	712
NarrowPeaks	306
NBAMSeq	675
NBSplice	223
ncdfFlow	2524
ncGTW	712
NCIgraph	536
ncRNAtools	685
ndexr	621
neaGUI	143
nearBynding	513
Nebulosa	1999
NeighborNet	264
nem	582
nempi	607
NetActivity	600
netbenchmark	178
netbiov	460
netboost	560
netboxr	174
netDx	209
nethet	844
netOmics	187
NetPathMiner	754
netprioR	551
netReg	133
netresponse	938
NetSAM	835
netSmooth	896
networkBMA	315
netZooR	318
NeuCA	225
NewWave	646
NGScopy	209
ngsReports	846
nipalsMCIA	679
nnNorm	852
nnSVG	815
NOISeq	1326
nondetects	842
NoRCE	767
normalize450K	822
NormalyzerDE	950
NormqPCR	903
normr	1064
normScore	20
notame	461
notameStats	377
notameViz	419
NPARC	728
npGSEA	923
NTW	682
nucleoSim	777
nucleR	1145
nuCpos	657
nudge	280
nullranges	858
NuPoP	832
NxtIRFcore	198
OAtools	328
occugene	670
OCplus	1128
octad	639
ODER	150
odseq	640
OGRE	661
OGSA	231
oligo	4086
oligoClasses	3521
OLIN	1122
OLINgui	864
omada	394
OmaDB	773
omicade4	965
OmicCircos	936
omicplotR	621
omicRexposome	899
omicsGMF	443
OmicsLonDA	278
OmicsMarkeR	194
OmicsMLRepoR	356
OMICsPCA	883
omicsPrint	1060
omicsViewer	704
Omixer	599
OmnipathR	2684
ompBAM	620
omXplore	520
Onassis	209
oncomix	725
oncoscanR	584
OncoScore	765
OncoSimulR	867
oneChannelGUI	358
oneSENSE	223
onlineFDR	536
ontoCAT	242
ontoProc	917
ontoProc2	95
ontoTools	181
openCyto	2027
openPrimeR	954
openPrimeRui	290
OpenStats	506
OperaMate	107
oposSOM	845
oppar	1015
oppti	268
optimalFlow	619
OPWeight	706
OrderedList	907
ORFhunteR	674
ORFik	1106
Organism.dplyr	608
OrganismDbi	3444
orthogene	1309
orthos	611
OSAT	810
Oscope	863
OSTA.data	505
OTUbase	983
OutlierD	363
OUTRIDER	1076
OutSplice	681
OVESEG	741
PAA	1083
PACE	8
packFinder	736
padma	714
PADOG	1025
pageRank	581
PAIRADISE	722
paircompviz	721
pairedGSEA	579
pairkat	637
pairseqsim	27
pamr	173
pandaR	1093
panelcn.mops	837
PAnnBuilder	253
PanomiR	705
panoramic	118
panp	1066
PANR	837
PanViz	186
PanVizGenerator	231
PAPi	266
parati	356
pareg	172
parglms	801
parody	873
partCNV	331
PAST	759
path2path	4
Path2PPI	779
pathifier	758
pathlinkR	638
pathMED	283
PathNet	743
PathoStat	837
pathprint	143
pathRender	898
pathVar	350
pathview	5706
pathwayPCA	768
PathwaySplice	205
PatientGeneSets	64
paxtoolsr	341
Pbase	310
pbcmc	131
pcaExplorer	1191
pcaGoPromoter	259
pcaMethods	7384
PCAN	903
PCAtools	1889
pcot2	486
PCpheno	484
pcxn	245
PDATK	773
pdInfoBuilder	1175
pdmclass	347
PeacoQC	964
peakCombiner	402
peakPantheR	731
PECA	795
peco	695
Pedixplorer	580
pengls	483
PepSetTest	449
PepsNMR	723
pepStat	895
pepVet	29
pepXMLTab	683
PERFect	223
periodicDNA	867
perturbatr	156
pfamAnalyzeR	707
PFP	149
PGA	387
pgca	503
pgen2gds	89
PGSEA	540
pgUtils	109
pgxRpi	397
phantasus	991
phantasusLite	493
PharmacoGx	1324
phemd	312
phenoDist	232
PhenoGeneRanker	413
phenomis	541
phenopath	916
phenoTest	1104
PhenStat	501
philr	938
PhIPData	706
phosphonormalizer	621
PhosR	1094
phylobar	145
PhyloProfile	743
phyloseq	8379
Pi	459
piano	1508
PICB	562
pickgene	711
PICS	699
Pigengene	938
PING	741
PinPath	144
pint	247
pipeComp	852
pipeFrame	745
PIPETS	435
Pirat	525
PIUMA	650
pkgDepTools	486
plaid	377
planet	830
planttfhunter	558
plasmut	441
plateCore	382
plethy	440
plgem	1047
plier	959
PlinkMatrix	369
PloGO2	219
plotgardener	906
plotGrouper	615
PLPE	822
plrs	328
PLSDAbatch	552
plw	375
plyinteractions	681
plyranges	1929
plyxp	658
pmm	587
pmp	839
PMScanR	416
PoDCall	594
podkat	1143
poem	542
pogos	760
polyester	565
Polyfit	232
polyICSFlow	24
PolySTest	508
Polytect	413
POMA	841
posDemux	413
POST	142
PostChicago	91
postNet	518
PoTRA	168
PowerExplorer	116
powerTCR	801
POWSC	695
ppcseq	686
PPInfer	731
ppiStats	540
pqsfinder	1028
prada	445
pram	866
prebs	896
preciseTAD	901
PrecisionTrialDrawer	166
PREDA	1078
predictionet	265
preprocessCore	19019
primirTSS	895
PrInCE	733
Prize	155
proActiv	860
proBAMr	883
proBatch	745
PROcess	893
procoil	1005
ProCoNA	244
proDA	1034
proFIA	275
profileplyr	919
profileScoreDist	701
progeny	2011
projectR	922
prolfqua	6
pRoloc	1689
pRolocGUI	975
PROMISE	814
PRONE	668
PROPER	878
PROPS	830
Prostar	879
prot2D	253
proteasy	153
ProteinBatcher	24
proteinProfiles	596
ProteoDisco	774
ProteomicsAnnotationHubData	242
ProteoMM	713
proteoQC	260
protGear	724
ProtGenerics	13018
PSEA	497
psichomics	1069
PSICQUIC	315
PSMatch	3830
psygenet2r	552
ptairMS	747
PTMods	1213
PubScore	149
pulsedSilac	167
puma	1296
punKEGGer	13
PureCN	1355
pvac	837
pvca	994
Pviz	855
pwalign	9391
PWMEnrich	1218
pwOmics	547
pwrEWAS	189
qckitfastq	267
qcmetrics	1189
QDNAseq	1288
QFeatures	4539
QFeaturesGUI	21
qmtools	657
qpcrNorm	911
qpgraph	1495
qPLEXanalyzer	892
qrqc	437
QRscore	464
qsea	949
qsmooth	792
QSutils	815
qsvaR	703
QTLExperiment	555
Qtlizer	627
QUALIFIER	300
quantiseqr	1726
quantMSImageR	38
quantro	1244
quantsmooth	1329
QuartPAC	389
QuasR	1550
QuaternaryProd	552
QUBIC	736
queeems	312
qusage	1476
qvalue	27744
R3CPET	920
r3Cseq	1158
R453Plus1Toolbox	1070
R4RNA	1352
RadioGx	848
raer	712
RaggedExperiment	1828
RAIDS	601
rain	878
rama	449
RAMEN	7
RamiGO	178
ramr	718
ramwas	955
RandomWalkRestartMH	269
randPack	791
randRotation	435
RankMap	339
RankProd	1142
RAREsim	485
RareVariantVis	988
Rariant	426
Rarr	917
rawDiag	453
rawrr	670
RbcBook1	1419
Rbec	442
RBedMethyl	351
RBGL	10698
RBioFormats	776
RBioinf	662
rBiopaxParser	1353
rBLAST	535
RBM	735
Rbowtie	1211
Rbowtie2	912
RbowtieCuda	172
RBPEqBind	18
RBPSpecificity	119
rbsurv	831
Rbwa	435
Rcade	532
RCAS	1010
RCASPAR	618
rcellminer	1020
rCGH	1250
Rchemcpp	282
RchyOptimyx	288
RcisTarget	1724
RCM	828
Rcollectl	185
Rcpi	989
RCSL	661
Rcwl	608
RcwlPipelines	593
RCX	669
RCy3	1822
RCyjs	840
RCytoscape	191
RDAVIDWebService	285
Rdbi	130
RdbiPgSQL	58
rDGIdb	290
Rdisop	1507
RDRToolbox	781
ReactomeContentService4R	166
ReactomeGraph4R	154
ReactomeGSA	837
ReactomePA	6720
readat	186
ReadqPCR	911
reb	461
REBET	576
rebook	628
receptLoss	248
reconsi	507
recount	1441
recount3	1492
recountmethylation	880
recoup	1098
RedeR	1316
RedisParam	555
REDseq	933
ReducedExperiment	521
RefNet	276
RefPlus	645
Rega	311
RegEnrich	721
regionalpcs	478
RegionalST	664
regioneR	2952
regioneReloaded	641
regionReport	1010
reglScatterplotR	5
regsplice	792
regutools	757
REMP	841
Repitools	817
ReportingTools	1636
reposTools	52
RepViz	643
ReQON	449
ResidualMatrix	5558
RESOLVE	613
Resourcerer	173
restfulSE	358
retrofit	604
ReUseData	447
rexposome	1196
rfaRm	689
Rfastp	763
rfcdmin	44
RFGeneRank	198
RFLOMICS	683
rflowcyt	181
rfPred	920
rGADEM	721
RGalaxy	353
rGenomeTracks	550
Rgin	155
RGMQL	306
RgnTX	310
rgoslin	677
RGraph2js	824
Rgraphviz	11263
rGREAT	1662
RGSEA	892
rgsepd	952
rhdf5	27619
rhdf5client	776
rhdf5filters	26199
Rhdf5lib	28653
rhinotypeR	499
Rhisat2	864
Rhtslib	28082
rHVDM	478
RiboCrypt	718
RiboDiPA	722
RiboProfiling	762
ribor	734
riboSeqR	1072
ribosomeProfilingQC	898
rifi	604
rifiComparative	501
Rigraphlib	2850
rigvf	339
RImmPort	646
Ringo	764
Rintact	79
RIPAT	256
RIPSeeker	334
Risa	561
RITAN	724
RIVER	782
RJMCMCNucleosomes	843
RLassoCox	511
RLMM	711
RLSeq	183
RMAGEML	78
Rmagpie	855
RMAPPER	129
RMassBank	1116
rMAT	280
rmelting	597
RmiR	317
Rmmquant	729
rmspc	621
RmzTabM	70
RNAAgeCalc	827
RNAdecay	627
rnaEditr	702
RNAinteract	475
RNAither	420
RNAmodR	879
RNAmodR.AlkAnilineSeq	779
RNAmodR.ML	814
RNAmodR.RiboMethSeq	721
RNAprobR	266
RNAsense	660
rnaSentry	13
rnaseqcomp	799
RNAseqCovarImpute	531
RnaSeqGeneEdgeRQL	38
rnaSeqMap	413
RNASeqPower	739
RNASeqR	203
RnaSeqSampleSize	820
RNAshapeQC	352
RnBeads	1301
Rnits	874
roar	986
roastgsa	589
ROC	2158
ROCpAI	620
RolDE	576
Roleswitch	277
Rolexa	206
rols	1304
ROntoTools	1032
ropls	2968
ROSeq	864
ROTS	930
RPA	950
rprimer	730
RProtoBufLib	3694
RpsiXML	620
rpx	1328
Rqc	1158
rqt	671
rqubic	675
rRDP	554
Rredland	73
RRHO	711
rrvgo	1469
Rsamtools	30336
rsbml	710
rScudo	743
rsemmed	615
RSeqAn	602
rSFFreader	246
RSNPper	86
Rsubread	2950
RSVSim	929
rSWeeP	650
rTANDEM	319
RTCA	793
RTCGA	1144
RTCGAToolbox	1472
RTN	1022
RTNduals	724
RTNsurvival	751
RTools4TB	56
RTopper	1002
Rtpca	680
rtracklayer	26119
Rtreemix	608
rTRM	1117
rTRMui	812
RUCova	572
runibic	388
Ruuid	141
RUVcorr	769
RUVnormalize	747
RUVSeq	1752
Rvisdiff	570
RVS	689
RWebServices	91
rWikiPathways	1012
S4Arrays	53674
S4Cartographer	109
S4Vectors	74754
safe	1595
SAGElyzer	67
sagenhaft	868
SAGx	446
SAIGEgds	701
samExploreR	128
sampleClassifier	677
SamSPECTRAL	789
sangeranalyseR	942
sangerseqR	1451
SanityR	412
SANTA	944
sapFinder	333
saps	60
SARC	172
sarks	665
saseR	540
satuRn	1116
savR	251
SBGNview	791
sbgr	28
SBMLR	833
SC3	1367
scafari	594
Scale4C	829
ScaledMatrix	17724
scAlign	154
SCAN.UPC	1025
scanMiR	700
scanMiRApp	723
scAnnotatR	697
SCANVIS	582
SCArray	762
SCArray.sat	550
SCATE	182
scater	12634
scatterHatch	535
scBatchQC	116
scBFA	728
SCBN	569
scBubbletree	666
scCB2	689
scCertify	24
scClassifR	78
scClassify	858
sccomp	871
scCompoundDE	103
scConform	345
scDataviz	852
scDblFinder	6115
scDD	978
scDDboost	615
scde	1178
scDesign3	595
scDiagnostics	582
scDotPlot	552
scds	1497
scECODA	491
SCFA	632
scFastDE	106
scFeatureFilter	872
scFeatures	682
scfind	124
scGPS	819
scGraphVerse	413
schex	810
scHiCcompare	432
scHOT	798
scider	572
scifer	620
ScISI	572
scLANE	537
scLang	385
scMAGeCK	120
scmap	1270
scMerge	1142
scMET	686
scmeth	832
scMitoMut	505
scMultiSim	672
SCnorm	970
scone	962
Sconify	725
SCOPE	736
scoreInvHap	811
scoup	444
scOverlay	4
scp	868
scPassport	289
scPCA	785
scPipe	860
scQTLtools	504
scran	10138
scrapper	3118
scReClassify	709
scRecover	663
screenCounter	578
ScreenR	572
scRepertoire	1570
scRNAseqApp	645
scruff	930
scry	1144
scShapes	481
scsR	290
scTensor	868
scTGIF	828
scTHI	633
scToppR	431
scTreeViz	731
scTypeEval	353
scuttle	14235
scviR	380
SDAMS	689
seahtrue	499
sechm	748
segmenter	791
segmentSeq	1169
selectKSigs	583
SELEX	862
SemDist	897
semisup	611
SEMPLR	419
SemSim	76
SEPA	148
SEPIRA	337
seq.hotSPOT	469
seq2pathway	769
seqArchR	303
seqArchRplus	264
SeqArray	1955
seqbias	484
seqCAT	838
seqCNA	374
seqcombo	577
SeqGate	623
SeqGSEA	1007
Seqinfo	48593
seqLogo	4602
seqPattern	1807
seqplots	400
seqsetvis	870
SeqSQC	1001
Seqtometry	361
seqTools	474
SeqVarTools	1420
SEraster	474
sesame	1658
SETA	479
SEtools	705
sevenbridges	882
sevenC	901
sfi	364
SGCP	387
SGSeq	1227
SharedObject	771
shiny.gosling	449
shinybiocloader	330
shinyDSP	503
shinyepico	727
shinyMethyl	1110
shinyTANDEM	231
ShortRead	8125
SIAMCAT	828
SICtools	715
sigaR	305
SigCheck	871
sigFeature	865
SigFuge	594
siggenes	4901
sights	754
signatureSearch	956
signeR	965
signet	93
signifinder	617
sigPathway	499
SigsPack	747
sigsquared	733
sigvar	26
SIM	865
SIMAT	780
SimBindProfiles	445
SimBu	587
SIMD	612
SimFFPE	685
SimiCviz	96
similaRpeak	895
SIMLR	1010
simona	1387
simPIC	620
simpleaffy	516
simpleSeg	846
simplifyEnrichment	1854
simulatorAPMS	106
simulatorZ	292
sincell	853
singIST	315
single	258
SingleCellAlleleExperiment	553
SingleCellExperiment	24483
SingleCellSignalR	900
singleCellTK	1217
SingleMoleculeFootprinting	440
SingleR	6760
singscore	2915
SiPSiC	480
SISPA	292
sitadela	645
Site2Target	432
sitePath	680
sizepower	739
SJava	83
sketchR	568
skewr	829
slalom	476
SLGI	626
slingshot	4684
slinky	177
SLqPCR	711
SMAD	593
SMAP	499
smartid	509
SmartPhos	300
SMITE	976
smoothclust	497
smoppix	517
SMTrackR	368
SNAData	65
SNAGEE	701
snapCGH	642
snapcount	674
snifter	1032
snm	781
SNPchip	459
SNPediaR	592
SNPhood	1253
snpMatrix	109
SNPRelate	2810
snpStats	3487
soGGi	799
sojourner	192
SomatiCA	165
SomaticSignatures	1009
SOMNiBUS	639
sosta	604
SpaceMarkers	561
SpacePAC	505
SpaceTrooper	562
spacexr	889
spade	161
spammR	15
Spaniel	890
SpaNorm	681
spARI	385
sparrow	986
SparseArray	59628
sparseDOSSA	300
sparseMatrixStats	21499
sparsenetgls	590
SparseSignatures	849
spaSim	662
SpatialArtifacts	473
SpatialCPie	710
SpatialData.data	8
SpatialData.plot	6
spatialdataR	36
spatialDE	771
SpatialDecon	902
SpatialExperiment	10717
SpatialExperimentIO	534
spatialFDA	510
SpatialFeatureExperiment	869
spatialHeatmap	617
SpatialOmicsOverlay	704
spatialSimGP	442
spatzie	296
speckle	1308
specL	897
SpeCond	900
Spectra	4464
SpectralTAD	754
SpectraQL	458
SpectraStash	19
SpectriPy	507
SPEM	774
SPIA	1839
SPIAT	813
SPICEY	428
spicyR	915
SpidermiR	367
SpiecEasi	525
spikeLI	750
spiky	616
spillR	487
spkTools	859
splatter	1552
splicegear	372
SpliceImpactR	368
splicelogic	311
spliceR	263
spliceSites	282
SpliceWiz	913
SplicingFactory	566
SplicingGraphs	1162
SplineDV	495
splineTCDiffExpr	9
splineTimeR	816
SPLINTER	856
splots	875
SpNeigh	364
SPONGE	1143
spoon	470
SpotClean	722
SPOTlight	1109
spotSegmentation	268
SpotSweeper	703
spqn	748
SPsimSeq	714
SQLDataFrame	337
SQUADD	360
squallms	472
sRACIPE	758
SRAdb	1236
sRAP	237
SRGnet	164
srnadiff	826
sscore	541
sscu	797
sSeq	865
ssize	784
sSNAPPY	734
SSPA	460
ssPATHS	725
ssrch	618
ssviz	821
StabMap	537
STADyUM	423
stageR	978
stam	102
STAN	398
standR	827
staRank	390
StarBioTrek	420
staRgate	437
Starr	402
STATegRa	1186
StatescopeR	419
Statial	733
statTarget	905
STdeconvolve	219
stepNorm	802
stepwiseCM	195
stJoincount	453
stPipe	546
strainspy	3
strandCheckR	787
Streamer	588
STRINGdb	4458
STROMA4	352
STRprofilerR	5
struct	846
Structstrings	779
structToolbox	848
StructuralVariantAnnotation	885
SubCellBarCode	757
subSeq	978
SUITOR	517
SummarizedBenchmark	398
SummarizedExperiment	53483
SummarizedHeatmap	8
Summix	467
SuperCellCyto	487
supersigs	662
supraHex	643
surfaltr	692
SurfR	506
survClust	429
survcomp	2382
survtype	624
Sushi	415
sva	10804
svaNUMT	690
SVAPLSseq	174
svaRetro	732
SVM2CRM	192
SVMDO	478
SVP	534
SwarnSeq	28
SWATH2stats	794
SwathXtend	488
swfdr	745
SwimR	261
switchBox	710
switchde	779
synapsis	663
synapter	717
synergyfinder	873
SynExtend	712
synlet	710
SynMut	614
syntenet	779
systemPipeR	2505
systemPipeShiny	749
systemPipeTools	660
tadar	584
TADCompare	702
tanggle	666
TAPseq	854
target	821
TargetDecoy	694
TargetScore	811
TargetSearch	838
TarSeqQC	366
TaxSEA	445
TBSignatureProfiler	867
TCC	1158
TCGAbiolinks	6750
TCGAbiolinksGUI	210
TCGAutils	1615
TCseq	1180
TDARACNE	370
TDbasedUFE	538
TDbasedUFEadv	585
TEKRABber	701
TENET	507
TENxIO	775
tenXplore	860
TEQC	999
terapadog	418
ternarynet	731
terraTCGAdata	550
TFARM	695
TFBSTools	4720
TFEA.ChIP	1104
TFHAZ	942
TFutils	1080
thyroidBRS	8
TiDEomics	167
tidybulk	1084
tidyCoverage	599
tidyexposomics	476
tidyFlowCore	454
tidyomics	446
tidyprint	328
tidysbml	398
tidySingleCellExperiment	979
tidySpatialExperiment	643
tidySummarizedExperiment	828
tidytof	112
tigre	1012
TileDBArray	677
tilingArray	1248
timecourse	1111
timeOmics	733
timescape	540
TimeSeriesExperiment	202
TimiRGeN	252
TIN	973
TissueEnrich	980
TitanCNA	639
tkWidgets	2762
tLOH	533
TMixClust	754
TMSig	534
TNBC.CMS	275
TnT	754
TOAST	1454
tofsims	224
tomoda	686
tomoseqr	585
TOP	529
ToPASeq	232
topconfects	861
topdownr	856
topGO	3227
toppgene	213
ToxicoGx	895
TPP	1221
TPP2D	754
tpSVG	524
tracktables	969
trackViewer	1713
tradeSeq	2460
TraianProt	101
TrajectoryGeometry	491
TrajectoryUtils	4610
transcriptogramer	992
transcriptR	1018
transformGamPoi	664
transite	609
tRanslatome	955
transmogR	540
transomics2cytoscape	605
TransView	731
TraRe	153
traseR	1147
Travel	62
traviz	270
TreeAndLeaf	876
treeclimbR	514
treeio	31965
treekoR	774
TreeSummarizedExperiment	3537
TREG	666
TReNA	23
trena	397
Trendy	797
TRESS	682
tricycle	1163
TrIdent	392
triform	255
trigger	516
trio	887
triplex	1021
tripr	740
tRNA	864
tRNAdbImport	736
tRNAscanImport	822
TRONCO	1025
TSAR	483
TSCAN	1370
tscR	186
TSENAT	126
tspair	395
TSRchitect	284
TSSi	274
TSSr	16
ttgsea	505
TTMap	811
TurboNorm	1006
TVTB	899
tweeDEseq	859
twilight	1017
twoddpcr	902
txcutr	629
txdbmaker	5546
tximeta	2485
tximport	5803
TxRegInfra	130
TypeInfo	459
UCell	3923
UCSC.utils	24043
Ularcirc	852
UMI4Cats	865
uncoverappLib	772
UNDO	906
unifiedWMWqPCR	770
UniProt.ws	1611
Uniquorn	904
universalmotif	2133
updateObject	659
UPDhmm	507
uSORT	882
VAExprs	588
VanillaICE	1321
VarCon	732
variancePartition	3211
VariantAnnotation	9664
VariantExperiment	402
VariantFiltering	1222
VariantTools	1117
VaSP	861
vasp	69
vbmp	984
VCFArray	789
VDJdive	547
Vega	239
VegaMC	956
velociraptor	791
veloviz	536
VennDetail	803
VERSO	565
vidger	1049
viper	2059
virtualArray	77
ViSEAGO	1059
VisiumIO	695
visiumStitched	522
vissE	727
VISTA	304
vmrseq	497
Voyager	861
VplotR	876
vsclust	683
vsn	7536
vtpnet	794
vulcan	709
waddR	374
wateRmelon	1720
wavClusteR	966
waveTiling	317
wavFeatExt	290
weaver	726
webbioc	991
weitrix	1089
widgetInvoke	40
widgetTools	2635
wiggleplotr	852
WithinHostExperiment	0
wpm	714
wppi	428
Wrench	2618
wSIR	108
XAItest	429
XBSeq	316
xCell2	642
XCIR	92
xcms	3537
xcore	688
XDE	1138
XeniumIO	432
xenLite	542
Xeva	747
XINA	672
xmapbridge	776
xmapcore	56
XNAString	328
xps	403
XVector	63836
y2hStat	59
yamss	922
YAPSA	1058
yaqcaffy	463
yarn	1001
ZarrArray	309
zellkonverter	4278
zenith	791
zFPKM	694
zinbwave	1569
zitools	484
zlibbioc	21012
ZygosityPredictor	552