Package	Download_score
a4	303
a4Base	358
a4Classif	299
a4Core	344
a4Preproc	441
a4Reporting	254
ABAEnrichment	109
ABarray	349
abseqR	233
ABSSeq	369
acde	316
ACE	260
aCGH	523
ACME	518
ADaCGH2	355
ADAM	238
ADAMgui	216
ADAPT	100
adaptest	35
adductomicsR	213
ADImpute	237
adSplit	377
adverSCarial	150
Aerith	31
AffiXcan	228
affxparser	2308
affy	8997
affycomp	378
AffyCompatible	161
affyContam	315
affycoretools	658
AffyExpress	137
affyILM	308
affyio	9189
affylmGUI	416
affyPara	169
affypdnn	182
affyPLM	1414
affyQCReport	128
AffyRNADegradation	264
AffyTiling	80
AGDEX	294
aggregateBioVar	245
Agi4x44PreProcess	55
agilp	231
AgiMicroRna	401
AHMassBank	160
AIMS	659
airpart	199
alabaster	166
alabaster.base	4801
alabaster.bumpy	165
alabaster.files	159
alabaster.mae	177
alabaster.matrix	4476
alabaster.ranges	4426
alabaster.sce	1374
alabaster.schemas	4333
alabaster.se	4397
alabaster.sfe	97
alabaster.spatial	178
alabaster.string	177
alabaster.vcf	164
ALDEx2	1690
alevinQC	242
AllelicImbalance	322
AlphaBeta	239
AlphaMissenseR	185
alpine	164
ALPS	33
AlpsNMR	265
alsace	97
altcdfenvs	386
AMARETTO	254
AMOUNTAIN	255
amplican	319
ampliQueso	92
AnalysisPageServer	57
anamiR	45
anansi	56
Anaquin	235
ANCOMBC	1946
AneuFinder	274
ANF	219
anglemania	65
animalcules	354
annaffy	527
AnnBuilder	35
anndataR	401
annmap	292
annoLinker	17
annotate	19764
AnnotationDbi	42347
AnnotationFilter	12210
AnnotationForge	2203
AnnotationFuncs	91
AnnotationHub	13376
AnnotationHubData	666
annotationTools	338
annotatr	863
anota	294
anota2seq	323
antiProfiles	232
AnVIL	801
AnVILAz	147
AnVILBase	605
AnVILBilling	184
AnVILGCP	165
AnVILPublish	181
AnVILWorkflow	159
APAlyzer	207
apComplex	362
apeglm	5645
APL	188
applera	16
appreci8R	255
aroma.light	1988
ArrayExpress	606
ArrayExpressHTS	102
arrayMagic	92
arrayMvout	341
arrayQCplot	15
arrayQuality	440
arrayQualityMetrics	673
ArrayTools	156
ArrayTV	123
ARRmNormalization	233
artMS	294
ASAFE	189
ASEB	211
ASGSCA	239
ASICS	341
asmn	11
ASpediaFI	63
ASpli	378
AssessORF	259
ASSET	305
ASSIGN	371
assorthead	15594
ASURAT	229
asuri	29
ATACCoGAPS	36
ATACseqQC	642
ATACseqTFEA	205
atena	214
AtlasRDF	33
atSNP	286
attract	374
AUCell	3559
autonomics	239
Autotuner	36
AWAggregator	69
AWFisher	217
awst	200
BaalChIP	280
BAC	137
bacon	381
BADER	252
BadRegionFinder	243
BAGS	249
ballgown	1673
bambu	483
bamsignals	1378
BANDITS	248
bandle	220
Banksy	491
banocc	197
barbieQ	138
barcodetrackR	162
basecallQC	265
BaseSpaceR	257
Basic4Cseq	296
BASiCS	436
BASiCStan	171
BasicSTARRseq	222
basilisk	4312
basilisk.utils	3514
batchCorr	86
batchelor	4636
BatchQC	331
BatchSVG	162
Battlefield	3
BayesKnockdown	214
BayesPeak	119
BayesSpace	578
bayNorm	265
baySeq	764
BBCAnalyzer	294
BCRANK	453
bcSeq	200
BDMMAcorrect	71
beachmat	18645
beachmat.hdf5	277
beachmat.tiledb	115
beadarray	845
beadarraySNP	179
BeadDataPackR	740
BeadExplorer	20
BEARscc	107
BEAT	353
BEclear	243
bedbaser	161
beer	205
benchdamic	132
BERT	144
betaHMM	149
betr	99
bettr	156
BG2	161
bgafun	134
BgeeCall	249
BgeeDB	276
BGmix	154
bgx	238
BHC	157
BicARE	350
BiFET	210
BiGGR	207
bigmelon	310
bigmemoryExtras	72
bigPint	97
bim	18
BindingSiteFinder	222
bioassayR	304
Biobase	57965
biobroom	427
biobtreeR	166
bioCancer	278
BioCartaImage	149
BiocBaseUtils	10302
BiocBook	188
BiocBuildReporter	2
BiocCaseStudies	158
BiocCheck	2023
biocDatasets	9
BiocDockerManager	43
BiocFHIR	181
BiocFileCache	28803
BiocGenerics	68441
Bioc.gff	65
biocGraph	394
BiocHail	106
BiocHubsShiny	182
BiocInstaller	163
BiocIO	21220
BiocMaintainerApp	4
biocmake	1109
BiocNeighbors	12856
BiocOncoTK	127
BioCor	291
BiocParallel	61017
BiocPkgDash	1
BiocPkgTools	408
biocroxytest	134
BiocSet	591
BiocSingular	15043
BiocSklearn	267
BiocStyle	7050
biocthis	626
BiocVersion	69916
biocViews	4876
BiocWorkflowTools	286
biodb	294
biodbChebi	175
biodbExpasy	36
biodbHmdb	136
biodbKegg	66
biodbLipidmaps	43
biodbMirbase	29
biodbNcbi	132
biodbNci	120
biodbUniprot	121
bioDist	464
BioGA	131
biomaRt	23331
BioMedR	15
biomformat	6878
BioMM	75
BioMVCClass	291
biomvRCNS	289
BioNAR	204
BioNERO	382
BioNet	573
BioNetStat	93
BioQC	358
BioSeqClass	113
biosigner	275
Biostrings	52758
biosvd	88
BioTIP	215
biotmle	244
biovizBase	6094
BiRewire	326
birta	101
birte	71
biscuiteer	240
BiSeq	400
BitSeq	238
blacksheepr	224
blase	60
blima	260
BLMA	313
BloodGen3Module	217
bluster	7659
bnbc	252
bnem	198
BOBaFIT	196
borealis	182
BPRMeth	313
BRAIN	375
brainflowprobes	78
brainImageR	16
BrainSABER	57
BrainStars	91
branchpointer	251
breakpointR	254
BreastSubtypeR	155
brendaDb	218
BREW3R.r	157
BRGenomics	168
bridge	147
BridgeDbR	281
broadSeq	109
BrowserViz	295
BrowserVizDemo	16
BSgenome	13692
BSgenomeForge	309
bsseq	1785
BubbleTree	260
BufferedMatrix	235
BufferedMatrixMethods	262
bugsigdbr	693
BulkSignalR	231
BUMHMM	246
bumphunter	2861
BumpyMatrix	725
BUS	301
BUScorrect	239
BUSpaRse	408
BUSseq	249
CaDrA	151
CAEN	182
CAFE	356
CAGEfightR	387
cageminer	208
CAGEr	505
CALIB	133
CalibraCurve	60
calm	162
CAMERA	819
CAMTHC	30
CaMutQC	150
canceR	295
cancerclass	563
CancerInSilico	87
CancerMutationAnalysis	116
CancerSubtypes	172
CAnD	102
caOmicsV	157
cardelino	214
Cardinal	556
CardinalIO	288
CARDspa	186
carnation	6
CARNIVAL	336
casper	341
CATALYST	715
Category	1595
categoryCompare	349
CatsCradle	152
CausalR	251
cbaf	231
CBEA	65
cBioPortalData	667
CBN2Path	55
CBNplot	220
cbpManager	214
CCAFE	163
ccfindR	229
ccImpute	192
ccmap	194
CCPlotR	201
CCPROMISE	234
ccrepe	303
CDI	168
celaref	264
celda	1106
CellaRepertorium	77
CellBarcode	228
cellbaseR	283
CellBench	310
cellGrowth	102
cellHTS	159
cellHTS2	302
CelliD	371
cellity	275
CellMapper	236
CellMentor	19
cellmig	75
cellmigRation	192
CellMixS	376
CellNOptR	410
cellscape	181
CellScore	146
CellTrails	261
cellTree	189
cellxgenedp	208
CEMiTool	351
censcyt	186
Cepo	321
ceRNAnetsim	178
CeTF	267
CexoR	329
CFAssay	195
cfdnakit	203
cfDNAPro	251
cfTools	151
CGEN	236
CGHbase	699
CGHcall	659
cghMCR	375
CGHnormaliter	297
CGHregions	304
ChAMP	951
CHARGE	29
charm	129
ChemmineOB	539
ChemmineR	1128
CHETAH	259
chevreulPlot	144
chevreulProcess	151
chevreulShiny	123
ChIC	61
Chicago	306
chihaya	223
chimera	148
chimeraviz	343
ChIPanalyser	277
ChIPComp	256
chipenrich	348
ChIPexoQual	273
ChIPpeakAnno	1295
ChIPQC	546
ChIPseeker	2781
chipseq	912
ChIPseqR	383
ChIPSeqSpike	50
ChIPsim	337
ChIPXpress	265
chopsticks	274
chroGPS	138
Chromatograms	75
chromDraw	240
ChromHeatMap	305
ChromoViz	40
chromPlot	322
ChromSCape	220
chromstaR	251
chromswitch	99
chromVAR	1466
CHRONOS	253
cicero	519
cigarillo	6406
CIMICE	185
CINdex	231
circRNAprofiler	284
CircSeqAlignTk	168
cisPath	154
CiteFuse	238
ClassifyR	521
cleanUpdTSeq	368
CleanUpRNAseq	162
cleaver	470
clevRvis	164
clippda	282
clipper	413
cliProfiler	183
cliqueMS	242
Clomial	232
Clonality	132
clonotypeR	88
clst	283
clstutils	275
CluMSID	237
ClustAll	154
clustComp	234
clusterExperiment	554
ClusterFoldSimilarity	154
ClusterGVis	29
ClusterJudge	222
clusterProfiler	25224
clusterSeq	228
ClusterSignificance	240
clusterStab	300
clustifyr	362
ClustIRR	159
clustSIGNAL	152
CMA	378
cmapR	671
CNAnorm	261
CNEr	2301
cn.farms	324
cn.mops	523
CNORdt	240
CNORfeeder	298
CNORfuzzy	293
CNORode	282
CNPBayes	92
CNTools	354
CNVfilteR	201
CNVgears	63
cnvGSA	248
CNViz	153
CNVMetrics	191
CNVPanelizer	278
CNVRanger	267
CNVrd2	304
CNVtools	70
cobindR	115
CoCiteStats	252
COCOA	302
codelink	427
CODEX	380
coexnet	85
CoGAPS	442
cogena	350
cogeqc	219
Cogito	199
coGPS	262
COHCAP	132
cola	449
comapr	156
combi	203
coMET	222
coMethDMR	199
compartmap	105
COMPASS	345
compcodeR	422
CompensAID	18
compEpiTools	285
CompGO	96
ComplexHeatmap	20637
CompoundDb	513
ComPrAn	162
compSPOT	138
conclus	44
concordexR	174
condcomp	9
condiments	281
CONFESS	299
consensus	208
ConsensusClusterPlus	3251
consensusDE	229
consensusOV	273
consensusSeekeR	268
consICA	191
CONSTANd	189
contiBAIT	193
conumee	416
convert	412
copa	308
COPDSexualDimorphism	12
copynumber	304
CopyNumber450k	50
CopyNumberPlots	241
CopywriteR	172
Coralysis	113
coRdon	428
CoRegFlux	25
CoRegNet	158
CoreGx	553
Cormotif	288
CorMut	68
coRNAi	87
corral	237
CORREP	123
coseq	347
CoSIA	161
cosmiq	266
cosmo	81
cosmoGUI	33
cosmosR	273
COSNet	231
COTAN	229
CountClust	86
countsimQC	380
covEB	236
CoverageView	311
covRNA	227
CPSM	137
cpvSNP	290
cqn	516
CRImage	379
CRISPRball	123
crisprBase	275
crisprBowtie	254
crisprBwa	156
crisprDesign	272
crisprScore	285
CRISPRseek	398
crisprseekplus	92
crisprShiny	125
CrispRVariants	359
crisprVerse	194
crisprViz	259
crlmm	561
CrossICC	15
crossmeta	182
crumblr	148
crupR	143
CSAR	348
csaw	743
csdR	169
CSOA	64
CSSP	80
CSSQ	206
ctc	490
CTdata	172
CTDquerier	374
CTexploreR	155
ctgGEM	34
cTRAP	259
ctsGE	244
CTSV	168
cummeRbund	465
CuratedAtlasQueryR	181
customCMPdb	204
customProDB	274
CVE	46
cyanoFilter	194
cycle	319
cydar	321
cypress	169
CytoDx	203
cytofast	36
cytofkit	74
CyTOFpower	140
cytofQC	137
CytoGLMM	190
cytoKernel	188
cytolib	2909
cytomapper	535
CytoMDS	155
cytoMEM	212
CytoML	798
CytoPipeline	191
CytoPipelineGUI	150
CytoTree	50
cytoviewer	203
dada2	3126
dagLogo	384
daMA	313
DAMEfinder	273
damidBind	26
DaMiRseq	310
Damsel	160
dandelionR	141
DAPAR	354
dar	156
DART	306
DASC	4
DASiR	52
dasper	62
DAVIDQuery	46
DBChIP	128
dcanr	376
DCATS	169
dce	144
dcGSA	203
DChIPRep	118
ddCt	356
ddgraph	76
ddPCRclust	242
dearseq	273
debCAM	190
debrowser	353
decemedip	19
DECIPHER	3570
deco	81
DEComplexDisease	86
decompTumor2Sig	233
DeconRNASeq	436
decontam	1977
decontX	515
DeconvoBuddies	150
deconvR	222
decoupleR	2171
DEDS	168
DeeDeeExperiment	68
DeepBlueR	128
DeepPINCS	192
deepSNV	459
DeepTarget	142
DEFormats	487
DegCre	175
DegNorm	228
DEGraph	238
DEGreport	790
DEGseq	438
DelayedArray	48766
DelayedDataFrame	235
DelayedMatrixStats	17171
DelayedRandomArray	187
DelayedTensor	191
DELocal	147
deltaCaptureC	183
deltaGseg	232
DeMAND	187
DeMixT	263
demuxmix	237
demuxSNP	176
DenoIST	11
densvis	785
DEP	973
DepecheR	247
DepInfeR	176
DeProViR	19
DEqMS	487
derfinder	835
derfinderHelper	725
derfinderPlot	362
DEScan2	274
DESeq	337
DESeq2	28651
DEsingle	392
DESpace	228
destiny	1161
DEsubs	288
DEWSeq	249
DExMA	214
DEXSeq	1960
dexus	111
DFP	287
DFplyr	145
DIAlignR	85
DiffBind	1511
diffcoexp	255
diffcyt	565
DifferentialRegulation	192
diffGeneAnalysis	232
diffHic	391
DiffLogo	264
diffloop	213
diffuStats	264
diffUTR	216
diggit	228
Dino	206
dinoR	157
Director	96
dir.expiry	5921
DirichletMultinomial	4936
discordant	270
DiscoRhythm	259
distinct	296
dittoSeq	1479
divergence	193
dks	212
DMCFB	219
DMCHMM	219
dmGsea	110
DMRcaller	351
DMRcate	1248
DMRforPairs	134
DMRScan	290
dmrseq	445
DNABarcodeCompatibility	167
DNABarcodes	319
DNAcopy	4358
DNAcycP2	144
DNAfusion	197
DNaseR	21
DNAshapeR	406
DNEA	98
domainsignatures	73
dominatR	32
DominoEffect	205
dominoSignal	162
doppelgangR	270
DOQTL	110
Doscheda	249
DOSE	25307
doseR	262
DOtools	44
DOTSeq	19
doubletrouble	228
dpeak	62
drawProteins	312
dreamlet	307
DRIMSeq	586
DriverNet	245
DropletUtils	2821
drugfindR	18
drugTargetInteractions	198
DrugVsDisease	279
dSimer	68
DspikeIn	64
DSS	958
dStruct	178
DTA	232
dualKS	150
Dune	194
DupChecker	52
DuplexDiscovereR	143
dupRadar	310
dyebias	333
DynDoc	1790
easier	280
EasyCellType	203
easylift	163
EasyqpcR	105
easyreporting	212
easyRNASeq	377
EBarrays	511
EBcoexpress	284
EBImage	3290
EBSEA	213
EBSeq	665
EBSeqHMM	133
ecolitk	367
EDASeq	1887
edd	72
EDDA	100
edge	322
edgeR	27219
EDIRquery	165
eds	342
eegc	116
EGAD	316
EGSEA	409
eiR	272
eisa	207
eisaR	307
ELBOW	106
ELMER	472
ELViS	146
EMDomics	310
EmpiricalBrownsMethod	266
ENCODExplorer	79
EnhancedVolcano	7150
enhancerHomologSearch	207
EnMCB	202
ENmix	535
EnrichDO	160
EnrichedHeatmap	1189
EnrichmentBrowser	705
enrichplot	25734
enrichTF	87
enrichViewNet	182
ensembldb	10380
ensemblVEP	183
ENVISIONQuery	62
epialleleR	236
EpiCompare	205
epidecodeR	191
EpiDISH	991
epigenomix	280
epigraHMM	272
epihet	49
EpiMix	204
epimutacions	213
epiNEM	280
EpipwR	144
epiregulon	154
epiregulon.extra	163
epiSeeker	8
epistack	215
epistasisGA	172
EpiTxDb	264
epivizr	403
epivizrChart	259
epivizrData	286
epivizrServer	249
epivizrStandalone	280
erccdashboard	285
erma	248
ERSSA	236
esATAC	241
escape	586
escheR	268
esetVis	279
eudysbiome	307
evaluomeR	238
EventPointer	306
EWCE	344
ExCluster	193
ExiMiR	327
exomeCopy	389
exomePeak	135
exomePeak2	138
exonmap	47
ExperimentHub	9316
ExperimentHubData	543
ExperimentSubset	212
explorase	72
ExploreModelMatrix	380
ExpressionAtlas	292
ExpressionView	119
exprExternal	18
externalVector	23
extraChIPs	246
fabia	377
facopy	136
factDesign	322
factR	146
faers	215
FamAgg	282
famat	229
farms	182
fastLiquidAssociation	241
FastqCleaner	266
fastreeR	199
fastseg	1168
fbat	46
FCBF	106
fCCAC	290
fCI	245
fcoex	101
fcScan	271
fdrame	255
FEAST	342
FeatSeekR	153
fedup	195
FELLA	349
FEM	94
fenr	169
ffpe	311
fgga	191
FGNet	314
fgsea	28314
FilterFFPE	228
findIPs	147
FindIT2	237
FindMyFriends	89
FinfoMDS	61
FISHalyseR	208
fishpond	649
FitHiC	218
flagme	256
FLAMES	225
flipflop	80
flowAI	696
flowBeads	295
flowBin	250
flowcatchR	323
flowCHIC	260
flowCL	90
flowClean	391
flowClust	1258
flowCore	3240
flowCut	281
flowCyBar	194
flowDensity	515
flowFit	84
flowFlowJo	63
flowFP	461
flowGate	211
flowGraph	193
flowMap	183
flowMatch	304
flowMeans	447
flowMerge	325
flowPeaks	354
flowPhyto	55
flowPloidy	222
flowPlots	209
flowQ	130
flowQB	96
FlowRepositoryR	84
FlowSOM	1340
flowSpecs	249
flowSpy	32
flowStats	956
flowTime	270
flowTrans	317
flowType	144
flowUtils	214
flowViz	1442
flowVS	332
flowWorkspace	1721
fmcsR	490
fmrs	197
fobitools	209
focalCall	67
FoldGO	144
FourCSeq	137
fourSynergy	5
fRagmentomics	4
fraq	2
FRASER	322
frenchFISH	148
FRGEpistasis	188
frma	410
frmaTools	333
FScanR	37
FunChIP	142
FunciSNP	140
funOmics	140
funtooNorm	257
FuseSOM	199
G4SNVHunter	159
GA4GHclient	228
GA4GHshiny	214
gaga	353
gage	1114
gaggle	174
gaia	106
GAPGOM	51
GAprediction	183
garfield	185
GARS	216
GateFinder	204
gatom	202
gaucho	57
GBScleanR	184
gcapc	322
gcatest	221
gCMAP	119
gCMAPWeb	121
GCPtools	177
gCrisprTools	308
gcrma	1517
GCSConnection	25
GCSFilesystem	22
GCSscore	80
GDCRNATools	383
gDNAx	174
gDR	142
gDRcore	169
gDRimport	177
gDRstyle	161
gDRutils	163
GDSArray	241
gdsfmt	2673
GeDi	168
geecc	79
GEM	207
gemini	186
gemma.R	229
genArise	285
genbankr	258
gene2pathway	25
GeneAccord	65
GeneAnswers	171
geneAttribution	262
GeneBreak	281
geneClassifiers	234
GENE.E	40
GeneExpressionSignature	315
genefilter	13553
genefu	705
GeneGA	191
GeneGeneInteR	157
GeneGroupAnalysis	18
GeneMeta	467
GeneNetworkBuilder	335
GeneOverlap	1029
geneplast	302
geneplotter	4070
GeneR	56
geneRecommender	269
GeneRegionScan	337
GeneRfold	16
geneRxCluster	251
GeneSelectMMD	307
GeneSelector	105
GENESIS	695
GeneSpring	50
GeneStructureTools	274
geNetClassifier	331
GeneticsBase	42
GeneticsDesign	70
GeneticsPed	271
GeneTonic	338
GeneTraffic	39
GeneTS	34
geneXtendeR	281
GENIE3	1774
genoCN	146
GenoGAM	107
genomation	1044
GenomAutomorphism	193
GenomeBase	12
GenomeGraphs	132
GenomeInfoDb	52913
genomeIntervals	372
genomes	263
GenomicAlignments	24847
GenomicDataCommons	1151
GenomicDistributions	269
GenomicFeatures	18628
GenomicFiles	1193
genomicInstability	200
GenomicInteractionNodes	177
GenomicInteractions	625
GenomicOZone	197
GenomicPlot	211
GenomicRanges	51682
GenomicScores	887
GenomicSuperSignature	242
GenomicTuples	269
Genominator	125
genoset	139
genotypeeval	99
GenoView	25
genphen	123
GenProSeq	169
GenRank	38
GenVisR	475
GeoDiff	196
GEOexplorer	158
GEOfastq	183
GEOmetadb	491
geomeTriD	174
GeomxTools	570
GEOquery	12643
GEOsearch	38
GEOsubmission	267
GeoTcgaData	218
gep2pep	205
gespeR	167
getDEE2	201
geva	195
GEWIST	205
geyser	142
gff3Plotter	17
gg4way	171
GGBase	183
ggbio	2852
ggcyto	1275
ggkegg	548
ggmanh	244
ggmsa	792
GGPA	195
ggsc	214
ggseqalign	121
ggspavis	462
GGtools	251
ggtree	29961
ggtreeDendro	173
ggtreeExtra	1982
ggtreeSpace	140
GIGSEA	209
ginmappeR	134
gINTomics	135
girafe	342
GISPA	128
GLAD	501
GladiaTOX	215
Glimma	1159
glmGamPoi	6404
glmSparseNet	284
GlobalAncova	1340
globalSeq	224
globaltest	2061
GloScope	167
glycoTraitR	11
gmapR	312
GmicR	209
gmoviz	237
GMRP	270
GNET2	199
GNOSIS	155
goatea	19
goCluster	16
GOexpress	392
GOfan	7
GOfuncR	404
GOFunction	135
GoogleGenomics	64
GOpro	303
goProfiles	425
GOSemSim	23296
goseq	1677
GOSim	181
goSorensen	172
goSTAG	308
GOstats	1616
GOsummaries	150
GOTHiC	442
goTools	316
GPA	174
gpart	108
gpls	420
gprege	107
gpuMagic	171
gQTLBase	91
gQTLstats	114
GrafGen	155
gramm4R	20
GRaNIE	229
granulator	189
graper	202
graph	22855
GraphAlignment	223
GraphAT	344
graphite	4979
GraphPAC	160
GRENITS	231
GreyListChIP	1325
GRmetrics	291
groHMM	330
GRridge	120
GSALightning	199
GSAR	321
GSCA	264
gscreend	208
GSEABase	11004
GSEABenchmarkeR	271
GSEAlm	374
GSEAmining	224
gsean	244
GSgalgoR	209
GSReg	253
GSRI	295
GSVA	9531
gtrellis	367
GUIDEseq	359
Guitar	387
gVenn	76
Gviz	3664
GWAS.BAYES	208
gwascat	807
GWASTools	920
gwasurvivr	235
GWENA	249
gypsum	4263
h5mread	10806
h5vc	421
hapFabia	291
Harman	395
HarmonizR	201
Harshlight	260
hca	144
HCABrowser	38
HCAExplorer	19
HCAMatrixBrowser	11
HCsnip	86
HDF5Array	16811
HDTD	194
hdxmsqc	150
heatmaps	468
Heatplus	518
HelloRanges	404
HELP	298
HEM	303
hermes	288
HERON	170
Herper	201
hexbin	97
HGC	182
hiAnnotator	272
HIBAG	349
HicAggR	154
HiCaptuRe	68
HiCBricks	321
HiCcompare	517
HiCDCPlus	224
HiCDOC	211
HiCExperiment	255
HiContacts	257
HiCool	117
HiCParser	124
HiCPotts	71
hicrep	31
hicVennDiagram	169
hierGWAS	247
hierinf	167
HilbertCurve	333
HilbertVis	383
HilbertVisGUI	145
HiLDA	247
hipathia	269
HIPPO	186
hiReadsProcessor	222
HIREewas	239
HiSpaR	2
HiTC	443
hmdbQuery	234
HMMcopy	558
HoloFoodR	145
hoodscanR	219
hopach	659
HPAanalyze	355
hpar	581
HPAStainR	33
HPiP	180
HTqPCR	434
HTSanalyzeR	128
HTSeqGenie	75
htSeqTools	134
HTSFilter	507
HuBMAPR	137
HubPub	534
HumanTranscriptomeCompendium	99
hummingbird	189
HVP	87
HybridExpress	154
HybridMTest	284
hypeR	244
hyperdraw	334
hypergraph	382
iASeq	197
iasva	248
iBBiG	276
Ibex	48
ibh	256
iBMQ	190
iCARE	235
Icens	581
icetea	236
iCheck	259
iChip	302
iClusterPlus	544
iCNV	202
iCOBRA	527
ideal	348
IdeoViz	291
idiogram	367
IdMappingAnalysis	100
IdMappingRetrieval	72
idpr	220
idr2d	270
IFAA	167
iFlow	29
igblastr	119
iGC	239
IgGeneUsage	209
igvR	284
igvShiny	208
IHW	1178
illuminaio	3144
ILoReg	229
imageHTS	183
imageTCGA	126
IMAS	186
imcRtools	372
Imetagene	85
IMMAN	203
immApex	355
immReferent	30
ImmuneSpaceR	138
immunoClust	254
immunogenViewer	113
immunotation	221
iModMix	59
IMPCdata	184
ImpulseDE	28
ImpulseDE2	52
impute	12416
INDEED	172
iNETgrate	148
infercnv	1860
infinityFlow	197
Informeasure	165
InPAS	359
INPower	263
inSilicoDb	94
inSilicoMerging	44
INSPEcT	365
INTACT	161
InTAD	241
intansv	317
interacCircos	158
InteractionSet	1926
InteractiveComplexHeatmap	653
interactiveDisplay	448
interactiveDisplayBase	2991
InterCellar	238
IntEREst	273
InterMineR	151
IntOMICS	30
IntramiRExploreR	227
inveRsion	76
IONiseR	421
iontree	54
iPAC	190
iPath	157
ipdDb	211
IPO	308
IPPD	98
IRanges	62532
IRISFGM	50
IrisSpatialFeatures	14
ISAnalytics	216
iscream	62
iSEE	697
iSEEde	187
iSEEfier	159
iSEEhex	206
iSEEhub	201
iSEEindex	173
iSEEpathways	173
iSEEtree	152
iSEEu	291
iSeq	231
ISLET	182
islify	135
iSNetwork	19
isobar	388
IsoBayes	168
IsoCorrectoR	238
IsoCorrectoRGUI	171
IsoformSwitchAnalyzeR	606
IsoGeneGUI	179
ISoLDE	193
isomiRs	296
iSPlot	25
ITALICS	306
iterativeBMA	269
iterativeBMAsurv	211
iterClust	71
iteremoval	57
IVAS	272
ivygapSE	233
IWTomics	280
jazzPanda	147
jmosaics	50
joda	101
JunctionSeq	75
karyoploteR	1235
katdetectr	194
KBoost	151
KCsmart	322
kebabs	386
KEGGgraph	6485
KEGGlincs	268
keggorth	23
keggorthology	379
KEGGprofile	105
KEGGREST	42181
KEGGSOAP	55
kimod	44
KinSwingR	219
kissDE	219
kmcut	134
KnowSeq	263
knowYourCG	160
koinar	156
LACE	260
LACHESIS	32
lapmix	164
LBE	375
lcmsPlot	11
ldblock	279
LEA	907
leapR	5
LedPred	203
lefser	669
lemur	193
les	303
levi	189
lfa	384
Lheuristic	118
limma	39438
limmaGUI	328
limpa	191
limpca	148
LimROTS	145
LINC	55
LineagePulse	75
lineagespot	182
LinkHD	220
linkSet	68
Linnorm	413
LinTInd	212
lionessR	245
lipidr	320
LipidTrend	90
LiquidAssociation	256
lisaClust	296
lmdme	267
LMGene	164
LOBSTAHS	233
loci2path	209
logicFS	317
logitT	137
Logolas	52
lol	60
LOLA	469
looking4clusters	58
LoomExperiment	710
LowMACA	116
LPE	324
LPEadj	137
lpNet	231
lpsymphony	1355
LRBaseDbi	201
LRcell	197
lumi	1447
lute	105
LVSmiRNA	107
LymphoSeq	281
M3C	695
M3D	99
M3Drop	612
m6Aboost	178
maanova	200
Maaslin2	1092
maaslin3	365
Macarron	126
macat	224
maCorrPlot	282
MACPET	88
MACSQuantifyR	178
MACSr	217
maDB	79
made4	539
MADSEQ	195
maftools	2990
MAGAR	202
MAGeCKFlute	281
magpie	202
magrene	174
MAI	194
maigesPack	233
MAIT	265
makecdfenv	471
makePlatformDesign	19
MANOR	308
manta	144
MantelCorr	244
MAPFX	149
mAPKL	124
maPredictDSC	240
mapscape	199
mariner	182
markeR	59
marr	223
marray	2217
martini	237
maser	302
maSigPro	628
maskBAD	288
MassArray	216
massiR	313
MassSpecWavelet	2148
MAST	2591
mastR	217
matchBox	219
matchprobes	43
MatrixGenerics	47773
MatrixQCvis	208
MatrixRider	272
matter	486
MaxContrastProjection	44
MBAmethyl	192
MBASED	330
MBCB	243
MBECS	193
mbkmeans	691
mbOmic	23
mBPCR	309
MBQN	232
mbQTL	128
MBttest	262
mcaGUI	98
MCbiclust	285
MCRestimate	102
mCSEA	288
mdgsa	107
mdp	267
mdqc	310
MDSvis	4
MDTS	210
MEAL	335
MeasurementError.cor	227
MEAT	251
MEB	229
MEDIPS	424
MEDME	297
megadepth	260
MEIGOR	273
Melissa	177
memes	374
MergeMaid	170
Mergeomics	260
MeSHDbi	417
meshes	363
meshr	357
MeSHSim	26
MesKit	283
messina	290
metaArray	137
Metab	124
metabCombiner	252
metabinR	176
MetaboAnnotation	336
MetaboCoreUtils	3101
MetaboDynamics	153
metabolomicsWorkbenchR	260
metabomxtr	244
MetaboSignal	332
metaCCA	204
MetaCyto	233
MetaDICT	62
metagene	220
metagene2	294
metagenomeFeatures	78
metagenomeSeq	2116
metahdep	253
metaMS	343
MetaNeighbor	296
MetaPhOR	189
metapod	6319
metapone	199
MetaProViz	3
metaSeq	284
metaseqR	143
metaseqR2	272
metavizr	101
MetaVolcanoR	98
metaX	24
MetCirc	263
MethCP	73
methimpute	256
methInheritSim	221
methodical	142
MethPed	272
MethReg	238
methrix	329
MethTargetedNGS	216
methVisual	118
methyAnalysis	140
MethylAid	319
methylCC	263
methylclock	376
methylGSA	311
methyLImp2	160
methylInheritance	260
methylKit	1086
MethylMix	330
methylMnM	298
methylPipe	350
methylscaper	203
MethylSeekR	445
methylSig	279
methylumi	1772
methyvim	43
MetID	218
MetMashR	113
MetNet	280
mfa	261
Mfuzz	1571
MGFM	271
MGFR	238
MGnifyR	166
mgsa	303
mia	1806
miaDash	139
miaSim	213
miaTime	84
miaViz	482
MiChip	278
microbiome	2475
microbiomeDASim	175
microbiomeExplorer	196
microbiomeMarker	456
MicrobiomeProfiler	227
MicrobiotaProcess	617
microRNA	742
microSTASIS	115
MICSQTL	166
midasHLA	186
MIGSA	118
miloR	1046
mimager	243
MIMOSA	143
mina	164
MineICA	397
minet	951
minfi	2672
MinimumDistance	338
MiPP	308
miQC	302
MIRA	278
MiRaGE	380
miRBaseConverter	395
miRcomp	275
mirIntegrator	267
MIRit	174
miRLAB	287
miRmine	153
miRNAmeConverter	209
miRNApath	221
miRNAtap	325
miRSM	243
miRsponge	23
miRspongeR	237
Mirsynergy	62
mirTarRnaSeq	219
missMethyl	1305
missRows	208
mist	119
mistyR	297
mitch	286
mitoClone2	197
mitology	167
mitoODE	60
mixOmics	4119
MLInterfaces	751
mlm4omics	14
MLP	445
MLSeq	351
MMAPPR2	45
MMDiff	88
MMDiff2	302
mmgmos	18
mmnet	58
MmPalateMiRNA	120
MMUPHin	310
mnem	275
moanin	200
mobileRNA	158
MobilityTransformR	35
MODA	219
ModCon	166
Modstrings	289
MOFA	35
MOFA2	1181
MOGAMUN	197
mogsa	431
MoleculeExperiment	189
MOMA	227
monaLisa	333
monocle	3830
Moonlight2R	176
MoonlightR	282
MoPS	73
mosaics	439
mosbi	208
MOSClip	148
mosdef	375
MOSim	240
Motif2Site	195
motifbreakR	455
motifcounter	223
MotifDb	1052
motifmatchr	1730
MotifPeeker	136
motifRG	124
motifStack	1107
motifTestR	175
MotIV	148
MouseFM	177
MPAC	131
MPFE	188
mpra	297
MPRAnalyze	228
MQmetrics	47
mQTL.NMR	82
msa	2563
MSA2dist	216
MsBackendMassbank	216
MsBackendMetaboLights	166
MsBackendMgf	735
MsBackendMsp	409
MsBackendRawFileReader	234
MsBackendSql	207
MsCoreUtils	4219
MsDataHub	258
MSEADbi	8
MsExperiment	1571
MsFeatures	1796
msgbsR	252
MSGFgui	115
MSGFplus	85
msImpute	230
mslp	129
msmsEDA	417
msmsTests	441
MSnbase	4104
MSnID	502
mspms	170
MSPrep	174
msPurity	326
msqrob2	324
MsQuality	184
MSstats	881
MSstatsBig	171
MSstatsBioNet	152
MSstatsConvert	744
MSstatsLiP	266
MSstatsLOBD	156
MSstatsPTM	391
MSstatsQC	250
MSstatsQCgui	170
MSstatsResponse	63
MSstatsSampleSize	71
MSstatsShiny	234
MSstatsTMT	501
MSstatsTMTPTM	15
MTseeker	23
MuData	213
Mulcom	300
MultiAssayExperiment	7360
MultiBaC	223
multiClust	287
multicrispr	220
MultiDataSet	1830
multiGSEA	302
multiHiCcompare	325
MultiMed	248
multiMiR	752
MultimodalExperiment	179
multiOmicsViz	110
MultiRNAflow	176
multiscan	275
multiSight	48
multistateQTL	143
multiWGCNA	191
multtest	12811
mumosa	225
MungeSumstats	799
muscat	895
muscle	574
musicatk	237
MutationalPatterns	578
mutscan	68
MutSeqR	20
MVCClass	293
mvGST	60
MWASTools	321
mygene	580
myvariant	334
mzID	3746
mzR	4254
NADfinder	274
NanoMethViz	257
NanoStringDiff	260
NanoStringNCTools	578
NanoStringQCPro	120
nanotatoR	67
NanoTube	249
NarrowPeaks	104
NBAMSeq	200
NBSplice	69
ncdfFlow	1590
ncGTW	193
NCIgraph	205
ncRNAtools	202
ndexr	218
neaGUI	55
nearBynding	226
Nebulosa	1491
NeighborNet	67
nem	233
nempi	202
NetActivity	172
netbenchmark	52
netbiov	139
netboost	200
netboxr	52
netDx	76
nethet	256
netOmics	73
NetPathMiner	269
netprioR	191
netReg	37
netresponse	294
NetSAM	269
netSmooth	265
networkBMA	114
netZooR	118
NeuCA	86
NewWave	230
NGScopy	69
ngsReports	272
nipalsMCIA	183
nnNorm	311
nnSVG	247
NOISeq	765
nondetects	274
NoRCE	233
normalize450K	231
NormalyzerDE	411
NormqPCR	364
normr	339
notame	80
notameStats	55
notameViz	73
NPARC	232
npGSEA	297
NTW	215
nucleoSim	247
nucleR	392
nuCpos	212
nudge	99
nullranges	344
NuPoP	299
NxtIRFcore	66
OAtools	3
occugene	222
OCplus	306
octad	213
ODER	45
odseq	226
OGRE	182
OGSA	73
oligo	3320
oligoClasses	2287
OLIN	379
OLINgui	316
omada	138
OmaDB	326
omicade4	376
OmicCircos	373
omicplotR	207
omicRexposome	250
omicsGMF	57
OmicsLonDA	75
OmicsMarkeR	73
OmicsMLRepoR	90
OMICsPCA	281
omicsPrint	266
omicsViewer	212
Omixer	201
OmnipathR	1389
ompBAM	211
omXplore	193
Onassis	68
oncomix	221
oncoscanR	187
OncoScore	233
OncoSimulR	295
oneChannelGUI	127
oneSENSE	75
onlineFDR	167
ontoCAT	78
ontoProc	374
ontoTools	76
openCyto	1095
openPrimeR	281
openPrimeRui	89
OpenStats	157
OperaMate	34
oposSOM	327
oppar	272
oppti	99
optimalFlow	190
OPWeight	234
OrderedList	303
ORFhunteR	208
ORFik	466
OrganismDbi	3285
Organism.dplyr	428
orthogene	773
orthos	170
OSAT	272
Oscope	324
OSTA.data	203
OTUbase	331
OutlierD	131
OUTRIDER	421
OutSplice	182
OVESEG	214
PAA	317
packFinder	235
padma	229
PADOG	441
pageRank	193
PAIRADISE	245
paircompviz	239
pairedGSEA	163
pairkat	190
pairseqsim	10
pamr	78
pandaR	316
panelcn.mops	299
PAnnBuilder	82
PanomiR	195
panp	392
PANR	270
PanViz	95
PanVizGenerator	85
PAPi	115
pareg	45
parglms	274
parody	323
partCNV	156
PAST	251
Path2PPI	265
pathifier	265
pathlinkR	180
pathMED	97
PathNet	261
PathoStat	259
pathprint	44
pathRender	319
pathVar	136
pathview	5504
pathwayPCA	274
PathwaySplice	86
PatientGeneSets	24
paxtoolsr	170
Pbase	100
pbcmc	53
pcaExplorer	510
pcaGoPromoter	82
pcaMethods	6155
PCAN	290
PCAtools	1361
pcot2	185
PCpheno	197
pcxn	72
PDATK	218
pdInfoBuilder	428
pdmclass	159
PeacoQC	452
peakCombiner	61
peakPantheR	213
PECA	309
peco	221
Pedixplorer	173
pengls	166
PepSetTest	139
PepsNMR	279
pepStat	311
pepXMLTab	239
PERFect	73
periodicDNA	266
perturbatr	44
pfamAnalyzeR	368
PFP	45
PGA	158
pgca	170
PGSEA	254
pgUtils	42
pgxRpi	142
phantasus	262
phantasusLite	163
PharmacoGx	581
phemd	112
phenoDist	84
PhenoGeneRanker	158
phenomis	177
phenopath	391
phenoTest	396
PhenStat	230
philr	446
PhIPData	218
phosphonormalizer	191
PhosR	354
PhyloProfile	284
phyloseq	7063
Pi	130
piano	732
PICB	141
pickgene	247
PICS	292
Pigengene	267
PING	259
pint	68
pipeComp	250
pipeFrame	269
PIPETS	147
Pirat	124
PIUMA	133
pkgDepTools	181
plaid	19
planet	348
planttfhunter	166
plasmut	146
plateCore	162
plethy	151
plgem	417
plier	414
PloGO2	81
plotgardener	394
plotGrouper	199
PLPE	271
plrs	138
PLSDAbatch	156
plw	129
plyinteractions	175
plyranges	1451
plyxp	186
pmm	175
pmp	309
PMScanR	64
PoDCall	172
podkat	368
poem	141
pogos	226
polyester	254
Polyfit	77
PolySTest	137
Polytect	145
POMA	311
posDemux	6
POST	45
PoTRA	46
PowerExplorer	33
powerTCR	448
POWSC	192
ppcseq	200
PPInfer	290
ppiStats	242
pqsfinder	417
prada	170
pram	227
prebs	313
preciseTAD	287
PrecisionTrialDrawer	48
PREDA	356
predictionet	98
preprocessCore	16363
primirTSS	230
PrInCE	222
Prize	35
proActiv	292
proBAMr	258
proBatch	117
PROcess	327
procoil	367
ProCoNA	84
proDA	395
proFIA	103
profileplyr	372
profileScoreDist	214
progeny	938
projectR	257
pRoloc	723
pRolocGUI	336
PROMISE	285
PRONE	164
PROPER	326
PROPS	232
Prostar	274
prot2D	99
proteasy	47
proteinProfiles	188
ProteoDisco	231
ProteomicsAnnotationHubData	76
ProteoMM	243
proteoQC	81
protGear	204
ProtGenerics	12457
PSEA	147
psichomics	290
PSICQUIC	118
PSMatch	3096
psygenet2r	145
ptairMS	261
PTMods	7
PubScore	47
pulsedSilac	41
puma	387
PureCN	458
pvac	283
pvca	532
Pviz	285
pwalign	8346
PWMEnrich	539
pwOmics	238
pwrEWAS	51
qckitfastq	130
qcmetrics	357
QDNAseq	686
QFeatures	3567
qmtools	203
qpcrNorm	274
qpgraph	529
qPLEXanalyzer	248
qrqc	167
QRscore	149
qsea	284
qsmooth	281
QSutils	284
qsvaR	187
QTLExperiment	166
Qtlizer	218
QUALIFIER	126
quantiseqr	963
quantro	493
quantsmooth	843
QuartPAC	130
QuasR	716
QuaternaryProd	209
QUBIC	289
qusage	598
qvalue	24003
R3CPET	290
r3Cseq	362
R453Plus1Toolbox	293
R4RNA	890
RadioGx	239
raer	198
RaggedExperiment	1085
RAIDS	142
rain	317
rama	162
RamiGO	63
ramr	203
ramwas	321
RandomWalkRestartMH	104
randPack	263
randRotation	172
RankProd	550
RAREsim	163
RareVariantVis	296
Rariant	157
Rarr	398
rawDiag	146
rawrr	319
RbcBook1	508
Rbec	142
RBedMethyl	7
RBGL	9826
RBioFormats	388
RBioinf	244
rBiopaxParser	610
rBLAST	292
RBM	245
Rbowtie	631
Rbowtie2	490
RbowtieCuda	84
rbsurv	278
Rbwa	158
Rcade	237
RCAS	334
RCASPAR	194
rcellminer	323
rCGH	470
Rchemcpp	125
RchyOptimyx	86
RcisTarget	1630
RCM	262
Rcollectl	88
Rcpi	355
RCSL	186
Rcwl	248
RcwlPipelines	190
RCX	192
RCy3	1151
RCyjs	292
RCytoscape	69
RDAVIDWebService	131
Rdbi	57
RdbiPgSQL	21
rDGIdb	107
Rdisop	872
RDRToolbox	333
ReactomeContentService4R	69
ReactomeGraph4R	38
ReactomeGSA	363
ReactomePA	4787
readat	59
ReadqPCR	364
reb	182
REBET	197
rebook	262
receptLoss	121
reconsi	171
recount	636
recount3	772
recountmethylation	244
recoup	379
RedeR	507
RedisParam	158
REDseq	299
ReducedExperiment	155
RefNet	97
RefPlus	258
RegEnrich	319
regionalpcs	124
RegionalST	152
regioneR	2309
regioneReloaded	186
regionReport	413
regsplice	238
regutools	230
REMP	271
Repitools	464
ReportingTools	897
reposTools	17
RepViz	182
ReQON	183
ResidualMatrix	4561
RESOLVE	162
Resourcerer	59
restfulSE	141
retrofit	168
ReUseData	147
rexposome	324
rfaRm	206
Rfastp	245
RFLOMICS	140
rflowcyt	92
rfPred	308
rGADEM	452
RGalaxy	115
rGenomeTracks	175
Rgin	45
RGMQL	65
RgnTX	156
rgoslin	261
RGraph2js	263
Rgraphviz	10315
rGREAT	952
RGSEA	280
rgsepd	283
rhdf5	25825
rhdf5client	289
rhdf5filters	24444
Rhdf5lib	26519
rhinotypeR	139
Rhisat2	307
Rhtslib	26024
rHVDM	167
RiboCrypt	215
RiboDiPA	222
RiboProfiling	295
ribor	211
riboSeqR	323
ribosomeProfilingQC	252
rifi	163
rifiComparative	154
Rigraphlib	1124
rigvf	135
RImmPort	204
Ringo	375
Rintact	34
RIPAT	67
RIPSeeker	134
Risa	242
RITAN	196
RIVER	269
RJMCMCNucleosomes	243
RLassoCox	171
RLMM	245
RLSeq	56
RMAGEML	22
Rmagpie	265
RMAPPER	41
RMassBank	436
rMAT	105
rmelting	210
RmiR	111
Rmmquant	225
rmspc	206
RNAAgeCalc	273
RNAdecay	165
rnaEditr	205
RNAinteract	137
RNAither	158
RNAmodR	239
RNAmodR.AlkAnilineSeq	207
RNAmodR.ML	242
RNAmodR.RiboMethSeq	197
RNAprobR	75
RNAsense	204
rnaseqcomp	279
RNAseqCovarImpute	153
rnaSeqMap	187
RNASeqPower	374
RNASeqR	56
RnaSeqSampleSize	308
RnBeads	597
Rnits	266
roar	313
roastgsa	165
ROC	1453
ROCpAI	181
RolDE	182
Roleswitch	90
Rolexa	83
rols	733
ROntoTools	434
ropls	1876
ROSeq	236
ROTS	472
RPA	336
rprimer	207
RProtoBufLib	2836
RpsiXML	245
rpx	696
Rqc	518
rqt	202
rqubic	264
rRDP	269
Rredland	27
RRHO	279
rrvgo	820
Rsamtools	28385
rsbml	334
rScudo	235
rsemmed	180
RSeqAn	210
rSFFreader	104
RSNPper	33
Rsubread	2363
RSVSim	323
rSWeeP	219
rTANDEM	113
RTCA	251
RTCGA	694
RTCGAToolbox	745
RTN	441
RTNduals	231
RTNsurvival	244
RTools4TB	10
RTopper	351
Rtpca	225
rtracklayer	23427
Rtreemix	219
rTRM	393
rTRMui	272
RUCova	162
runibic	182
Ruuid	54
RUVcorr	237
RUVnormalize	293
RUVSeq	1169
Rvisdiff	169
RVS	217
RWebServices	27
rWikiPathways	581
S4Arrays	48418
S4Vectors	63223
safe	811
SAGElyzer	24
sagenhaft	283
SAGx	166
SAIGEgds	225
samExploreR	39
sampleClassifier	202
SamSPECTRAL	331
sangeranalyseR	377
sangerseqR	809
SanityR	71
SANTA	272
sapFinder	100
saps	22
SARC	126
sarks	194
saseR	153
satuRn	502
savR	67
SBGNview	282
sbgr	8
SBMLR	290
SC3	654
scafari	88
Scale4C	249
ScaledMatrix	14356
scAlign	84
scanMiR	224
scanMiRApp	196
scAnnotatR	215
SCAN.UPC	383
SCANVIS	216
SCArray	225
SCArray.sat	148
SCATE	46
scater	8703
scatterHatch	157
scBFA	217
SCBN	186
scBubbletree	194
scCB2	199
scClassifR	26
scClassify	294
sccomp	257
scDataviz	225
scDblFinder	2993
scDD	416
scDDboost	180
scde	644
scDesign3	197
scDiagnostics	155
scDotPlot	184
scds	714
SCFA	202
scFeatureFilter	227
scFeatures	194
scfind	33
scGPS	234
scGraphVerse	55
schex	288
scHiCcompare	150
scHOT	248
scider	189
scifer	189
ScISI	226
scLANE	56
scMAGeCK	37
scmap	557
scMerge	553
scMET	190
scmeth	249
scMitoMut	149
scMultiSim	187
SCnorm	326
scone	383
Sconify	210
SCOPE	248
scoreInvHap	237
scoup	135
scp	353
scPCA	267
scPipe	327
scQTLtools	108
scran	6526
scrapper	1197
scReClassify	238
scRecover	247
screenCounter	167
ScreenR	145
scRepertoire	885
scRNAseqApp	197
scruff	259
scry	512
scShapes	155
scsR	98
scTensor	231
scTGIF	254
scTHI	198
scTreeViz	190
scuttle	10701
scviR	137
SDAMS	204
seahtrue	170
sechm	280
segmenter	193
segmentSeq	380
selectKSigs	173
SELEX	273
SemDist	283
semisup	187
SEMPLR	5
SemSim	29
SEPA	41
SEPIRA	119
seq2pathway	230
seqArchR	171
seqArchRplus	139
SeqArray	1213
seqbias	183
seqCAT	241
seqCNA	121
seqcombo	178
SeqGate	192
SeqGSEA	345
seq.hotSPOT	148
Seqinfo	21040
seqLogo	3808
seqPattern	1075
seqplots	125
seqsetvis	313
SeqSQC	285
Seqtometry	1
seqTools	236
SeqVarTools	742
SEraster	147
sesame	1024
SETA	60
SEtools	226
sevenbridges	285
sevenC	274
sfi	2
SGCP	201
SGSeq	551
SharedObject	305
shinybiocloader	66
shinyDSP	156
shinyepico	219
shiny.gosling	118
shinyMethyl	336
shinyTANDEM	70
ShortRead	6902
SIAMCAT	322
SICtools	269
sigaR	110
SigCheck	267
sigFeature	436
SigFuge	273
siggenes	3558
sights	225
signatureSearch	324
signeR	301
signet	25
signifinder	196
sigPathway	167
SigsPack	221
sigsquared	230
SIM	294
SIMAT	245
SimBindProfiles	150
SimBu	203
SIMD	186
SimFFPE	182
similaRpeak	277
SIMLR	397
simona	885
simPIC	146
simpleaffy	213
simpleSeg	302
simplifyEnrichment	1357
simulatorAPMS	27
simulatorZ	113
sincell	304
singIST	7
single	96
SingleCellAlleleExperiment	162
SingleCellExperiment	20115
SingleCellSignalR	413
singleCellTK	487
SingleMoleculeFootprinting	194
SingleR	5495
singscore	1957
SiPSiC	149
SISPA	92
sitadela	192
Site2Target	129
sitePath	247
sizepower	270
SJava	23
sketchR	156
skewr	254
slalom	192
SLGI	185
slingshot	2735
slinky	67
SLqPCR	243
SMAD	178
SMAP	163
smartid	145
SmartPhos	28
SMITE	279
smoothclust	144
smoppix	129
SMTrackR	4
SNAGEE	266
snapCGH	253
snapcount	205
snifter	516
snm	324
SNPchip	204
SNPediaR	204
SNPhood	343
snpMatrix	34
SNPRelate	2301
snpStats	2600
soGGi	527
sojourner	57
SomatiCA	67
SomaticSignatures	365
SOMNiBUS	173
sosta	170
SpaceMarkers	151
SpacePAC	202
SpaceTrooper	107
spacexr	411
spade	57
Spaniel	235
SpaNorm	188
spARI	67
sparrow	480
SparseArray	52642
sparseDOSSA	79
sparseMatrixStats	17636
sparsenetgls	177
SparseSignatures	264
spaSim	189
SpatialCPie	223
spatialDE	244
SpatialDecon	323
SpatialExperiment	7612
SpatialExperimentIO	197
spatialFDA	179
SpatialFeatureExperiment	361
spatialHeatmap	231
SpatialOmicsOverlay	177
spatialSimGP	130
spatzie	152
speckle	441
specL	293
SpeCond	294
Spectra	3439
SpectralTAD	261
SpectraQL	137
SpectriPy	67
SPEM	250
SPIA	972
SPIAT	252
SPICEY	64
spicyR	386
SpidermiR	115
spikeLI	273
spiky	201
spillR	142
spkTools	269
splatter	708
splicegear	134
spliceR	112
spliceSites	80
SpliceWiz	269
SplicingFactory	172
SplicingGraphs	359
SplineDV	151
splineTCDiffExpr	5
splineTimeR	268
SPLINTER	256
splots	344
SPONGE	266
spoon	138
SpotClean	222
SPOTlight	485
spotSegmentation	70
SpotSweeper	254
spqn	221
SPsimSeq	236
SQLDataFrame	168
SQUADD	101
squallms	137
sRACIPE	255
SRAdb	628
sRAP	79
SRGnet	44
srnadiff	237
sscore	204
sscu	248
sSeq	336
ssize	286
sSNAPPY	210
SSPA	237
ssPATHS	206
ssrch	200
ssviz	261
StabMap	148
STADyUM	62
stageR	467
stam	37
STAN	133
standR	314
staRank	127
StarBioTrek	111
staRgate	21
Starr	169
STATegRa	364
StatescopeR	5
Statial	251
statTarget	331
STdeconvolve	94
stepNorm	277
stepwiseCM	63
stJoincount	184
stPipe	74
strandCheckR	229
Streamer	276
STRINGdb	2949
STROMA4	152
struct	348
Structstrings	252
structToolbox	271
StructuralVariantAnnotation	375
SubCellBarCode	217
subSeq	316
SUITOR	163
SummarizedBenchmark	154
SummarizedExperiment	48122
Summix	157
SuperCellCyto	67
supersigs	247
supraHex	338
surfaltr	227
SurfR	154
survClust	134
survcomp	1913
survtype	200
Sushi	208
sva	9261
svaNUMT	183
SVAPLSseq	70
svaRetro	181
SVM2CRM	76
SVMDO	175
SVP	162
SWATH2stats	246
SwathXtend	196
swfdr	280
SwimR	81
switchBox	248
switchde	244
synapsis	192
synapter	279
synergyfinder	388
SynExtend	241
synlet	221
SynMut	197
syntenet	287
systemPipeR	1664
systemPipeShiny	217
systemPipeTools	193
tadar	169
TADCompare	247
tanggle	229
TAPseq	229
target	241
TargetDecoy	208
TargetScore	258
TargetSearch	265
TarSeqQC	134
TaxSEA	143
TBSignatureProfiler	257
TCC	526
TCGAbiolinks	5844
TCGAbiolinksGUI	76
TCGAutils	880
TCseq	747
TDARACNE	121
TDbasedUFE	171
TDbasedUFEadv	209
TEKRABber	187
TENET	136
TENxIO	295
tenXplore	250
TEQC	341
terapadog	151
ternarynet	220
terraTCGAdata	168
TFARM	207
TFBSTools	3722
TFEA.ChIP	320
TFHAZ	275
TFutils	276
tidybulk	449
tidyCoverage	168
tidyexposomics	18
tidyFlowCore	128
tidyomics	166
tidyprint	8
tidysbml	142
tidySingleCellExperiment	471
tidySpatialExperiment	198
tidySummarizedExperiment	379
tidytof	89
tigre	321
TileDBArray	200
tilingArray	425
timecourse	431
timeOmics	253
timescape	193
TimeSeriesExperiment	77
TimiRGeN	70
TIN	307
TissueEnrich	377
TitanCNA	236
tkWidgets	1876
tLOH	186
TMixClust	225
TMSig	142
TNBC.CMS	70
TnT	260
TOAST	726
tofsims	78
tomoda	185
tomoseqr	184
TOP	165
ToPASeq	80
topconfects	323
topdownr	273
topGO	2687
toppgene	1
ToxicoGx	243
TPP	363
TPP2D	214
tpSVG	145
tracktables	423
trackViewer	929
tradeSeq	1141
TrajectoryGeometry	158
TrajectoryUtils	2861
transcriptogramer	272
transcriptR	298
transformGamPoi	210
transite	231
tRanslatome	312
transmogR	147
transomics2cytoscape	201
TransView	312
TraRe	38
traseR	308
Travel	7
traviz	86
TreeAndLeaf	265
treeclimbR	153
treeio	27829
treekoR	240
TreeSummarizedExperiment	2595
TREG	205
trena	145
TReNA	5
Trendy	258
TRESS	220
tricycle	473
TrIdent	126
triform	83
trigger	198
trio	322
triplex	376
tripr	210
tRNA	292
tRNAdbImport	239
tRNAscanImport	236
TRONCO	395
TSAR	136
TSCAN	719
tscR	54
tspair	130
TSRchitect	136
TSSi	93
ttgsea	167
TTMap	267
TurboNorm	327
TVTB	321
tweeDEseq	327
twilight	398
twoddpcr	253
txcutr	187
txdbmaker	5967
tximeta	1675
tximport	4724
TxRegInfra	32
TypeInfo	152
UCell	1999
UCSC.utils	37412
Ularcirc	272
UMI4Cats	243
uncoverappLib	206
UNDO	279
unifiedWMWqPCR	233
UniProt.ws	992
Uniquorn	281
universalmotif	1436
updateObject	186
UPDhmm	145
uSORT	294
VAExprs	176
VanillaICE	495
VarCon	221
variancePartition	1745
VariantAnnotation	9603
VariantExperiment	135
VariantFiltering	348
VariantTools	345
vasp	19
VaSP	251
vbmp	338
VCFArray	263
VDJdive	175
Vega	80
VegaMC	328
velociraptor	296
veloviz	163
VennDetail	359
VERSO	178
vidger	263
viper	1266
virtualArray	23
ViSEAGO	324
VisiumIO	263
visiumStitched	145
vissE	260
vmrseq	129
Voyager	313
VplotR	246
vsclust	187
vsn	6319
vtpnet	293
vulcan	190
waddR	145
wateRmelon	1054
wavClusteR	281
waveTiling	125
weaver	257
webbioc	353
weitrix	265
widgetInvoke	18
widgetTools	1820
wiggleplotr	321
wpm	212
wppi	155
Wrench	2070
XAItest	130
XBSeq	164
xCell2	224
XCIR	18
xcms	2248
xcore	193
XDE	405
XeniumIO	137
xenLite	137
Xeva	233
XINA	219
xmapbridge	248
xmapcore	20
XNAString	134
xps	124
XVector	58518
y2hStat	23
yamss	319
YAPSA	332
yaqcaffy	221
yarn	331
zellkonverter	3087
zenith	273
zFPKM	239
zinbwave	956
zitools	137
zlibbioc	27223
ZygosityPredictor	170