Package	Download_score
a4	583
a4Base	652
a4Classif	522
a4Core	544
a4Preproc	677
a4Reporting	424
ABAEnrichment	192
ABarray	636
abseqR	470
ABSSeq	613
acde	570
ACE	507
aCGH	896
ACME	797
ADaCGH2	628
ADAM	437
ADAMgui	394
ADAPT	160
adaptest	61
adductomicsR	329
ADImpute	467
adSplit	695
adverSCarial	308
Aerith	205
AffiXcan	469
affxparser	2818
affy	9806
affycomp	730
AffyCompatible	284
affyContam	553
affycoretools	997
AffyExpress	253
affyILM	550
affyio	9915
affylmGUI	760
affyPara	284
affypdnn	249
affyPLM	1934
affyQCReport	239
AffyRNADegradation	471
AffyTiling	139
AGDEX	541
aggregateBioVar	486
Agi4x44PreProcess	98
agilp	412
AgiMicroRna	699
AHMassBank	289
AIMS	921
airpart	411
alabaster	307
alabaster.base	5434
alabaster.bumpy	318
alabaster.files	321
alabaster.mae	336
alabaster.matrix	5132
alabaster.ranges	5054
alabaster.sce	1584
alabaster.schemas	4917
alabaster.se	5036
alabaster.sfe	173
alabaster.spatial	363
alabaster.string	329
alabaster.vcf	318
ALDEx2	2085
alevinQC	494
AllelicImbalance	694
AlphaBeta	431
AlphaMissenseR	401
alpine	278
ALPS	62
AlpsNMR	533
alsace	154
altcdfenvs	718
AMARETTO	511
AMOUNTAIN	450
amplican	683
ampliQueso	155
AnalysisPageServer	94
anamiR	81
anansi	295
Anaquin	444
ANCOMBC	2527
AneuFinder	405
ANF	426
anglemania	335
animalcules	617
annaffy	815
AnnBuilder	70
anndataR	1221
annmap	532
annoLinker	224
annotate	21560
AnnotationDbi	45960
AnnotationFilter	12637
AnnotationForge	2689
AnnotationFuncs	185
AnnotationHub	14870
AnnotationHubData	1156
annotationTools	606
annotatr	1170
anota	534
anota2seq	548
antiProfiles	395
AnVIL	1057
AnVILAz	271
AnVILBase	771
AnVILBilling	339
AnVILGCP	302
AnVILPublish	325
AnVILVRS	49
AnVILWorkflow	209
APAlyzer	410
apComplex	646
apeglm	6723
APL	419
applera	39
appreci8R	536
aroma.light	2185
ArrayExpress	870
ArrayExpressHTS	185
arrayMagic	127
arrayMvout	653
arrayQCplot	28
arrayQuality	588
arrayQualityMetrics	973
ArrayTools	275
ArrayTV	205
ARRmNormalization	416
artMS	474
ASAFE	332
ASEB	404
ASGSCA	446
ASICS	591
asmn	34
ASpediaFI	125
ASpli	730
AssessORF	509
ASSET	499
ASSIGN	607
assorthead	18107
ASURAT	469
asuri	228
ATACCoGAPS	87
atacInferCnv	174
ATACseqQC	841
ATACseqTFEA	461
atena	442
AtlasRDF	70
atSNP	509
attract	734
AUCell	4189
augere.core	56
augere.de	63
augere.gsea	66
augere.screen	52
augere.solo	65
autonomics	532
Autotuner	64
AWAggregator	226
AWFisher	417
awst	370
BaalChIP	458
BAC	249
bacon	619
BADER	412
BadRegionFinder	502
BAGS	403
ballgown	1993
bambu	756
BamScale	60
bamsignals	1802
BANDITS	470
bandle	461
Banksy	843
banocc	337
barbieQ	324
barcodetrackR	185
barmixR	43
basecallQC	373
BaseSpaceR	490
Basic4Cseq	562
BASiCS	797
BASiCStan	336
BasicSTARRseq	436
basilisk	5154
basilisk.utils	3341
batchCorr	268
BatChef	154
batchelor	5297
BatchQC	535
BatchSVG	282
Battlefield	208
BayesKnockdown	380
BayesPeak	200
BayesSpace	947
bayNorm	489
baySeq	999
BBCAnalyzer	583
BCRANK	734
bcSeq	351
BDMMAcorrect	139
beachmat	20842
beachmat.hdf5	425
beachmat.tiledb	195
beadarray	1312
beadarraySNP	363
BeadDataPackR	927
BeadExplorer	34
BEARscc	195
BEAT	661
BEclear	449
bedbaser	306
beer	332
benchdamic	418
BenchHub	61
BERT	288
betaHMM	348
betr	169
betterChromVAR	179
bettr	330
BG2	305
bgafun	224
BgeeCall	553
BgeeDB	513
BGmix	238
bgx	409
BHC	243
BicARE	620
BiFET	396
BiGGR	269
bigmelon	573
bigmemoryExtras	120
bigPint	163
bim	35
BindingSiteFinder	499
bioassayR	529
Biobase	61953
biobroom	652
biobtreeR	318
bioCancer	591
BioCartaImage	309
BiocAzul	149
BiocBaseUtils	14005
BiocBook	353
BiocBuildReporter	168
BiocCaseStudies	272
BiocCheck	2874
biocDatasets	22
BiocDockerManager	84
BiocFHIR	367
BiocFileCache	29497
BiocGenerics	72357
Bioc.gff	260
biocGraph	683
BiocHail	221
BiocHubsShiny	351
BiocInstaller	259
BiocIO	22169
BiocMaintainerApp	164
biocmake	5342
BiocNeighbors	15128
BiocOncoTK	259
BioCor	551
BiocParallel	60447
BiocPkgDash	179
BiocPkgTools	690
biocroxytest	252
BiocSet	718
BiocSingular	17343
BiocSklearn	399
BiocStyle	8233
biocthis	927
BiocVersion	74641
biocViews	5635
BiocWorkflowTools	478
biodb	527
biodbChebi	235
biodbExpasy	83
biodbHmdb	152
biodbKegg	116
biodbLipidmaps	88
biodbMirbase	66
biodbNcbi	142
biodbNci	136
biodbUniprot	140
bioDist	679
BioGA	261
biomaRt	24443
BioMedR	33
biomformat	7463
BioMM	140
BioMVCClass	535
biomvRCNS	571
BioNAR	416
BioNERO	595
BioNet	894
BioNetStat	170
BioQC	631
BioSeqClass	216
biosigner	508
Biostrings	55981
biosvd	151
BioTIP	482
biotmle	482
biovizBase	6476
BiRewire	441
birta	184
birte	119
biscuiteer	584
BiSeq	694
BitSeq	353
blacksheepr	461
blase	300
blima	527
BLMA	573
BloodGen3Module	387
bluster	9553
bnbc	574
bnem	449
BOBaFIT	391
borealis	382
BPRMeth	390
BRAIN	649
brainflowprobes	148
brainImageR	33
BrainSABER	94
BrainStars	183
branchpointer	576
breakpointR	509
BreastSubtypeR	348
brendaDb	421
BREW3R.r	336
BRGenomics	262
bridge	278
BridgeDbR	518
broadSeq	320
BrowserViz	510
BrowserVizDemo	32
BSgenome	14148
BSgenomeForge	473
bsseq	2238
BubbleTree	331
BufferedMatrix	458
BufferedMatrixMethods	435
bugsigdbr	637
BulkSignalR	449
BUMHMM	484
bumphunter	3541
BumpyMatrix	1027
BUS	522
BUScorrect	476
BUSpaRse	655
BUSseq	445
CaDrA	301
CAEN	324
CAFE	739
CAGEfightR	711
cageminer	425
CAGEr	766
CALIB	243
CalibraCurve	258
calm	289
CAMERA	1157
CAMTHC	72
CaMutQC	338
canceR	481
cancerclass	777
CancerInSilico	159
CancerMutationAnalysis	228
CancerSubtypes	258
CAnD	171
caOmicsV	237
cardelino	450
Cardinal	914
CardinalIO	490
CARDspa	405
carnation	160
CARNIVAL	517
casper	596
CATALYST	944
Category	2020
categoryCompare	703
CatsCradle	328
CausalR	430
cbaf	459
CBEA	120
cBioPortalData	990
CBN2Path	222
CBNplot	426
cbpManager	404
CCAFE	337
ccfindR	400
ccImpute	382
ccmap	247
CCPlotR	366
CCPROMISE	444
ccrepe	437
CDI	377
celaref	557
celda	1723
CellaRepertorium	155
CellBarcode	465
cellbaseR	523
CellBench	599
cellGrowth	168
cellHTS	267
cellHTS2	508
CelliD	499
cellity	527
CellMapper	451
CellMentor	200
cellmig	297
cellmigRation	353
CellMixS	643
cellNexus	53
CellNOptR	672
cellscape	317
CellScore	222
CellTrails	530
cellTree	263
cellxgenedp	372
CEMiTool	594
censcyt	399
Cepo	552
ceRNAnetsim	330
CeTF	523
CexoR	636
CFAssay	339
cfdnakit	422
cfDNAPro	493
cfTools	205
CGEN	429
CGHbase	955
CGHcall	910
cghMCR	599
CGHnormaliter	546
CGHregions	544
CGRphylo2	51
ChAMP	1243
CHARGE	63
charm	225
ChemmineOB	739
ChemmineR	1457
CHETAH	485
chevreulPlot	253
chevreulProcess	328
chevreulShiny	323
ChIC	105
Chicago	550
chihaya	449
chimera	263
chimeraviz	667
ChIPanalyser	541
ChIPComp	445
chipenrich	657
ChIPexoQual	582
ChIPpeakAnno	1532
ChIPQC	817
ChIPseeker	3359
chipseq	1200
ChIPseqR	686
ChIPSeqSpike	95
ChIPsim	626
ChIPXpress	458
chopsticks	501
chroGPS	222
Chromatograms	288
chromDraw	418
ChromHeatMap	601
ChromoViz	73
chromPlot	561
ChromSCape	570
chromstaR	396
chromswitch	190
chromVAR	1827
CHRONOS	445
cicero	795
cigarillo	14040
CIMICE	366
CINdex	290
circRNAprofiler	611
CircSeqAlignTk	342
cisPath	223
CiteFuse	499
CLAMP	69
ClassifyR	855
cleanUpdTSeq	734
CleanUpRNAseq	389
cleaver	725
clevRvis	311
clippda	555
clipper	739
cliProfiler	406
cliqueMS	427
Clomial	407
Clonality	235
ClonalSim	189
clonotypeR	166
clst	478
clstutils	483
CluMSID	422
ClustAll	330
clustComp	426
clusterExperiment	828
ClusterFoldSimilarity	331
ClusterGVis	277
ClusterJudge	423
clusterProfiler	27991
clusterSeq	466
ClusterSignificance	427
clusterStab	548
clustifyr	619
ClustIRR	341
clustSIGNAL	320
CMA	663
cmapR	925
CNAnorm	471
CNEr	2321
cn.farms	674
cn.mops	870
CNORdt	415
CNORfeeder	572
CNORfuzzy	528
CNORode	485
CNPBayes	139
CNTools	568
CNVfilteR	473
CNVgears	107
cnvGSA	484
CNViz	328
CNVMetrics	406
CNVPanelizer	547
CNVRanger	566
CNVrd2	613
CNVtools	150
cobindR	187
CoCiteStats	466
COCOA	599
codelink	801
CODEX	629
coexnet	145
CoGAPS	659
cogena	618
cogeqc	435
Cogito	376
coGPS	480
COHCAP	218
cola	723
comapr	370
combi	420
coMET	323
coMethDMR	445
compartmap	213
COMPASS	510
compcodeR	739
CompensAID	203
compEpiTools	652
CompGO	173
ComplexHeatmap	22841
CompoundDb	826
ComPrAn	306
compSPOT	270
conclus	83
concordexR	384
condcomp	26
condiments	511
CONFESS	558
consensus	391
ConsensusClusterPlus	3632
consensusDE	314
consensusOV	549
consensusSeekeR	556
consICA	426
CONSTANd	362
contiBAIT	331
conumee	654
convert	655
copa	538
COPDSexualDimorphism	37
copynumber	428
CopyNumber450k	82
CopyNumberPlots	506
CopywriteR	268
Coralysis	318
coRdon	678
CoRegFlux	56
CoRegNet	282
CoreGx	864
Cormotif	513
CorMut	128
coRNAi	139
corral	436
CORREP	243
coseq	611
CoSIA	358
cosmiq	492
cosmo	121
cosmoGUI	66
cosmosR	463
COSNet	419
COTAN	402
CountClust	149
countsimQC	709
covEB	420
CoverageView	547
covRNA	456
CPSM	308
cpvSNP	570
cqn	770
CrcBiomeScreen	189
CRImage	697
CRISPRball	306
crisprBase	498
crisprBowtie	456
crisprBwa	298
crisprDesign	522
crisprScore	525
CRISPRseek	628
crisprseekplus	195
crisprShiny	305
CrispRVariants	697
crisprVerse	345
crisprViz	506
crlmm	981
CrossICC	40
crossmeta	300
crumblr	300
crupR	342
CSAR	591
csaw	1144
csdR	312
CSOA	260
CSSP	176
CSSQ	471
ctc	689
CTdata	394
CTDquerier	627
CTexploreR	376
ctgGEM	75
cTRAP	548
ctsGE	472
CTSV	327
cummeRbund	574
CuratedAtlasQueryR	292
customCMPdb	391
customProDB	534
CVE	96
cyanoFilter	411
cycle	530
cydar	590
cypress	355
CytoDx	378
cytofast	66
cytofkit	115
CyTOFpower	352
cytofQC	332
CytoGLMM	364
cytoKernel	387
cytolib	3423
cytomapper	831
CytoMDS	355
cytoMEM	380
CytoML	1187
CytoPipeline	415
CytoPipelineGUI	327
CytoTree	86
cytoviewer	432
dada2	3655
dagLogo	701
daMA	563
DAMEfinder	572
damidBind	270
DaMiRseq	635
Damsel	372
dandelionR	251
DAPAR	634
DaparToolshed	56
dar	355
DART	554
DASC	13
DASiR	90
dasper	106
DAssemble	45
DAVIDQuery	96
daVis	56
DBChIP	215
dbSequence	44
dcanr	622
DCATS	317
dce	211
dcGSA	348
DChIPRep	181
ddCt	607
ddgraph	127
ddPCRclust	446
dearseq	504
debCAM	256
debrowser	600
decemedip	229
DECIPHER	4295
deco	169
DEComplexDisease	153
decompTumor2Sig	461
DeconRNASeq	583
decontam	2576
decontX	857
DeconvoBuddies	360
deconvR	485
decoupleR	3053
DEDS	291
DeeDeeExperiment	335
DeepBlueR	220
DeepPINCS	345
deepSNV	822
DeepTarget	309
DEFormats	721
DegCre	352
DegNorm	479
DEGraph	409
DEGreport	1080
DEGseq	694
DelayedArray	54703
DelayedDataFrame	467
DelayedMatrixStats	18799
DelayedRandomArray	350
DelayedTensor	398
DELocal	357
deltaCaptureC	379
deltaGseg	420
DeMAND	321
DeMixT	514
demuxmix	395
demuxSNP	400
DenoIST	201
densvis	909
DEP	980
DepecheR	436
DepInfeR	360
DeProViR	36
DEqMS	753
derfinder	1172
derfinderHelper	915
derfinderPlot	721
DEScan2	619
DESeq	784
DESeq2	31328
DEsingle	542
DESpace	505
destiny	1633
DEsubs	575
DEWSeq	516
DExMA	422
DEXSeq	2359
dexus	192
DFP	553
DFplyr	322
DIAlignR	140
DiffBind	1940
diffcoexp	418
diffcyt	863
DifferentialRegulation	394
diffGeneAnalysis	403
diffHic	767
DiffLogo	438
diffloop	292
diffuStats	438
diffUTR	462
diggit	434
Dino	431
dinoR	344
Director	149
dir.expiry	11059
DirichletMultinomial	5789
discordant	472
DiscoRhythm	503
distinct	536
dittoSeq	1622
divergence	389
dks	382
DMCFB	468
DMCHMM	477
dmGsea	320
DMRcaller	666
DMRcate	1569
DMRforPairs	253
DMRScan	569
dmrseq	801
DNABarcodeCompatibility	325
DNABarcodes	487
DNAcopy	4692
DNAcycP2	292
dnaEPICO	73
DNAfusion	445
DNaseR	51
DNAshapeR	654
DNEA	282
domainsignatures	144
dominatR	221
DominoEffect	472
dominoSignal	347
doppelgangR	549
DOQTL	183
Doscheda	515
DOSE	27313
doseR	495
DOtools	241
DOTSeq	249
doubletrouble	459
dpeak	110
drawProteins	486
dreamlet	606
DRIMSeq	887
DriverNet	410
DropletUtils	3490
drugfindR	212
drugTargetInteractions	375
DrugVsDisease	544
dSimer	109
DspikeIn	339
DSS	1322
dStruct	371
DTA	393
dualKS	259
DuckDBArray	6
DuckDBDataFrame	9
DuckDBGRanges	8
DuckDBSpatial	3
Dune	360
DupChecker	101
DuplexDiscovereR	313
dupRadar	503
dyebias	637
DynDoc	2164
easier	547
EasyCellType	404
easylift	344
EasyqpcR	182
easyreporting	426
easyRNASeq	673
EBarrays	902
EBcoexpress	540
EBImage	3625
EBSEA	374
EBSeq	873
EBSeqHMM	208
ecolitk	684
EDASeq	2238
edd	124
EDDA	177
edge	575
edgeR	29733
EDIRquery	319
eds	475
eegc	221
EGAD	489
EGSEA	751
eiR	499
eisa	321
eisaR	580
ELBOW	180
ELMER	621
ELViS	327
EMDomics	516
EMMA	66
EmpiricalBrownsMethod	421
EMTscore	10
ENCODExplorer	135
EnhancedVolcano	7396
enhancerHomologSearch	459
EnMCB	456
ENmix	761
EnrichDO	331
EnrichedHeatmap	1583
EnrichmentBrowser	1065
enrichplot	28774
enrichTF	170
enrichViewNet	352
ensembldb	10865
ensemblVEP	270
ENVISIONQuery	148
epialleleR	465
EpiCompare	449
epidecodeR	398
EpiDISH	1372
epigenomix	590
epigraHMM	545
epihet	103
EpiMix	465
epimutacions	477
epiNEM	524
EpipwR	228
epiregulon	351
epiregulon.extra	358
epiRomics	174
epiSeeker	249
epistack	472
epistasisGA	353
EpiTxDb	501
epivizr	734
epivizrChart	555
epivizrData	580
epivizrServer	442
epivizrStandalone	515
erccdashboard	599
erma	353
ERSSA	482
esATAC	654
escape	837
escheR	528
esetVis	554
eudysbiome	567
evaluomeR	441
EventPointer	547
EWCE	628
ExCluster	350
ExiMiR	612
exomeCopy	524
exomePeak	235
exomePeak2	218
exonmap	77
ExperimentHub	10368
ExperimentHubData	935
ExperimentSubset	425
explorase	140
ExploreModelMatrix	596
exploreSE	4
ExpoRiskR	164
ExpressionAtlas	523
ExpressionView	220
exprExternal	29
externalVector	62
extraChIPs	523
fabia	623
facopy	186
factDesign	579
factR	356
faers	425
FamAgg	501
famat	467
farms	311
fastLiquidAssociation	465
FastqCleaner	540
fastRanges	215
fastreeR	373
fastseg	1538
fbat	81
FCBF	188
fCCAC	566
fCI	442
fcoex	159
fcScan	422
fdrame	475
FEAST	570
FeatSeekR	298
fedup	380
FELLA	633
FEM	154
fenr	356
ffpe	574
fgga	393
FGNet	594
fgsea	28193
FilterFFPE	466
findIPs	326
FindIT2	487
FindMyFriends	166
FinfoMDS	210
FISHalyseR	382
fishash	9
fishpond	1053
FitHiC	310
flagme	497
FLAMES	491
flipflop	150
flowAI	961
flowBeads	555
flowBin	515
flowcatchR	628
flowCHIC	507
flowCL	181
flowClean	636
flowClust	1848
flowCore	3965
flowCut	536
flowCyBar	361
flowDensity	753
flowFit	152
flowFlowJo	100
flowFP	797
flowGate	380
flowGraph	360
flowMap	289
flowMatch	589
flowMeans	744
flowMerge	576
flowPeaks	564
flowPhyto	94
flowPloidy	419
flowPlots	394
flowQ	213
flowQB	150
FlowRepositoryR	144
FlowSOM	1693
flowSpecs	518
flowSpy	57
flowStats	1378
flowTime	495
flowTrans	548
flowType	216
flowUtils	323
flowViz	1952
flowVS	599
flowWorkspace	2278
fmcsR	763
fmrs	318
fobitools	427
focalCall	124
FoldGO	201
FourCSeq	236
fourSynergy	224
fRagmentomics	229
fraq	164
FRASER	635
frenchFISH	249
FRGEpistasis	347
frma	716
frmaTools	555
FScanR	82
FunChIP	207
FunciSNP	242
funOmics	240
funtooNorm	483
FuseSOM	408
G4SNVHunter	328
GA4GHclient	466
GA4GHshiny	437
gaga	616
gage	1498
gaggle	316
gaia	187
GAPGOM	106
GAprediction	347
garfield	329
GARS	415
GateFinder	409
gatom	399
gaucho	105
GBScleanR	353
gcapc	646
gcatest	406
gCMAP	194
gCMAPWeb	200
GCPtools	465
gCrisprTools	659
gcrma	1931
GCSConnection	50
GCSFilesystem	41
GCSscore	152
GDCRNATools	698
gDNAx	394
gDR	298
gDRcore	337
gDRimport	374
gDRstyle	361
gDRutils	327
GDSArray	470
gdsfmt	3027
GeDi	318
geecc	136
GEM	405
gemini	348
gemma.R	432
genArise	495
genbankr	358
gene2pathway	59
GeneAccord	123
GeneAnswers	261
geneAttribution	452
GeneBreak	574
geneClassifiers	444
GENE.E	73
GeneExpressionSignature	600
genefilter	14765
genefu	1112
GeneGA	279
GeneGeneInteR	254
GeneGroupAnalysis	35
GeneMeta	811
GeneNetworkBuilder	687
GeneOverlap	1349
geneplast	518
geneplotter	4337
GeneR	99
geneRecommender	480
GeneRegionScan	744
GeneRfold	29
geneRxCluster	459
GeneSelectMMD	574
GeneSelector	196
GENESIS	1028
GeneSpring	83
GeneStructureTools	515
geNetClassifier	616
GeneticsBase	73
GeneticsDesign	150
GeneticsPed	424
GeneTonic	612
GeneTraffic	73
GeneTS	62
geneXtendeR	495
GENIE3	2000
genoCN	254
GenoGAM	190
genomation	1361
GenomAutomorphism	420
GenomeBase	26
GenomeGraphs	240
GenomeInfoDb	42491
genomeIntervals	668
genomes	415
GenomicAlignments	25986
GenomicCoordinates	164
GenomicDataCommons	1544
GenomicDistributions	527
GenomicFeatures	18930
GenomicFiles	1453
genomicInstability	371
GenomicInteractionNodes	363
GenomicInteractions	1008
GenomicOZone	448
GenomicPlot	416
GenomicRanges	54735
GenomicScores	1129
GenomicSuperSignature	516
GenomicTuples	572
Genominator	226
genoset	241
genotypeeval	200
GenoView	53
genphen	181
GenProSeq	274
GenRank	83
GenVisR	789
GeoDiff	424
GEOexplorer	182
GEOfastq	255
GEOmetadb	726
geomeTriD	364
GeomxTools	788
GEOquery	14795
GEOsearch	70
GEOsubmission	468
GeoTcgaData	444
gep2pep	373
gesel	47
gespeR	288
getDEE2	335
geva	369
GEWIST	375
GExPipe	54
geyser	289
gff3Plotter	34
gg4way	373
GGBase	309
ggbio	3288
ggcyto	1734
ggkegg	709
ggmanh	449
ggmsa	989
GGPA	379
ggsc	381
ggseqalign	265
ggspavis	769
GGtools	367
ggtree	33070
ggtreeDendro	306
ggtreeExtra	2432
ggtreeSpace	267
GIGSEA	338
ginmappeR	266
gINTomics	338
girafe	534
GISPA	206
GLAD	751
GladiaTOX	403
Glimma	1421
glmGamPoi	6780
glmSparseNet	524
GlobalAncova	1697
globalSeq	422
globaltest	2513
GloScope	362
glycoTraitR	185
gmapR	498
GmicR	447
gmoviz	533
GMRP	507
GNET2	321
GNOSIS	357
GOaGO	227
goatea	269
goCluster	27
GOexpress	667
GOfan	183
GOfuncR	591
GOFunction	233
GoogleGenomics	113
GOpro	576
goProfiles	716
GOSemSim	26164
goseq	1970
GOSim	314
goSorensen	353
goSTAG	543
GOstats	2054
GOsummaries	264
GOTHiC	766
goTools	540
GPA	307
gpart	158
GPlinksR	29
gpls	725
gprege	189
gpuMagic	216
gQTLBase	175
gQTLstats	182
GrafGen	354
gramm4R	39
GRaNIE	601
granulator	170
graper	385
graph	24782
GraphAlignment	411
GraphAT	625
GraphExperiment	199
graphite	6395
GraphPAC	269
GRENITS	403
GreyListChIP	1607
GRmetrics	528
groHMM	694
GRridge	194
GSABenchmark	183
GSALightning	389
GSAR	632
GSCA	506
gscreend	430
GSEABase	12759
GSEABenchmarkeR	543
GSEAlens	8
GSEAlm	681
GSEAmining	396
gsean	436
GSgalgoR	397
GSReg	496
GSRI	582
GSVA	11755
gtrellis	629
GUIDEseq	756
Guitar	650
gVenn	283
Gviz	4162
GWAS.BAYES	404
gwascat	1154
GWASTools	1240
gwasurvivr	439
GWENA	471
gypsum	4856
h5mread	13675
h5vc	888
hammers	190
hapFabia	532
Harman	642
HarmonizR	318
Harshlight	399
hca	158
HCABrowser	70
HCAExplorer	38
HCAMatrixBrowser	24
HCsnip	134
HDF5Array	18935
HDTD	338
hdxmsqc	366
heatmaps	720
Heatplus	812
HelloRanges	654
HELP	564
HEM	568
hermes	532
HERON	358
Herper	288
hexbin	129
HGC	338
hiAnnotator	357
HIBAG	565
HicAggR	370
HiCaptuRe	295
HiCBricks	606
HiCcompare	782
HiCDCPlus	458
HiCDOC	459
HiCExperiment	476
HiContacts	533
HiCool	224
HiCParser	274
HiCPotts	271
hicrep	59
hicVennDiagram	339
hierGWAS	452
hierinf	284
HilbertCurve	606
HilbertVis	650
HilbertVisGUI	241
HiLDA	505
hipathia	584
HIPPO	352
hiReadsProcessor	293
HIREewas	410
HiSpaR	145
HistoImagePlot	191
HiTC	791
hmdbQuery	383
HMMcopy	768
HoloFoodR	320
hoodscanR	411
hopach	953
HPAanalyze	561
hpar	960
HPAStainR	61
HPiP	380
HTqPCR	718
HTSanalyzeR	233
HTSeqGenie	138
htSeqTools	221
HTSFilter	826
HuBMAPR	288
HubPub	856
HumanTranscriptomeCompendium	182
hummingbird	398
HVP	269
HybridExpress	340
HybridMTest	485
hypeR	404
hyperdraw	541
hypergraph	605
iASeq	346
iasva	445
iBBiG	386
Ibex	244
ibh	419
iBMQ	332
iCARE	431
Icens	888
icetea	520
iCheck	504
iChip	560
iClusterPlus	679
iCNV	387
iCOBRA	852
ideal	732
IdeoViz	570
idiogram	740
IdMappingAnalysis	179
IdMappingRetrieval	149
idpr	437
idr2d	472
IFAA	300
iFlow	42
igblastr	485
iGC	452
IgGeneUsage	404
igvR	609
igvShiny	399
IHW	1549
illuminaio	3812
ILoReg	444
ImageArray	213
imageFeatureTCGA	176
imageHTS	308
imageTCGA	254
imageTCGAutils	209
IMAS	361
imcRtools	672
Imetagene	139
IMMAN	343
immApex	667
immGLIPH	54
immLynx	183
immReferent	267
ImmuneSpaceR	233
immunoClust	512
immunogenViewer	249
immunotation	347
iModMix	212
IMPCdata	312
ImpulseDE	65
ImpulseDE2	89
impute	13809
INDEED	307
iNETgrate	371
infercnv	2294
infinityFlow	408
Informeasure	306
InPAS	728
INPower	411
inSilicoDb	140
inSilicoMerging	91
INSPEcT	723
INTACT	314
InTAD	511
intansv	597
interacCircos	288
InteractionSet	2174
InteractiveComplexHeatmap	855
interactiveDisplay	635
interactiveDisplayBase	2865
InterCellar	430
IntEREst	587
InterMineR	262
IntOMICS	54
IntramiRExploreR	378
inveRsion	162
IONiseR	657
iontree	108
iPAC	314
iPath	316
ipdDb	436
IPO	525
IPPD	172
IRanges	66203
IRISFGM	110
IrisSpatialFeatures	32
ISAnalytics	451
iscream	299
iSEE	935
iSEEde	386
iSEEfier	310
iSEEhex	396
iSEEhub	429
iSEEid	54
iSEEindex	362
iSEEpathways	381
iSEEtree	352
iSEEu	541
iSeq	414
ISLET	384
islify	273
iSNetwork	41
isobar	715
IsoBayes	346
IsoCorrectoR	403
IsoCorrectoRGUI	338
IsoformSwitchAnalyzeR	982
IsoGeneGUI	302
ISoLDE	343
isomiRs	622
iSPlot	43
ITALICS	571
iterativeBMA	476
iterativeBMAsurv	390
iterClust	146
iteremoval	105
IVAS	572
ivygapSE	394
IWTomics	484
jazzPanda	349
jmosaics	90
joda	183
JunctionSeq	140
jvecfor	158
karyoploteR	1650
katdetectr	441
KBoost	273
KCsmart	623
kebabs	706
KEGGemUP	30
KEGGgraph	6658
KEGGlincs	506
keggorth	43
keggorthology	755
KEGGprofile	186
KEGGREST	44421
KEGGSOAP	101
kimod	88
KinSwingR	400
kissDE	456
kmcut	287
KnowSeq	442
knowYourCG	256
koinar	290
LACE	514
LACHESIS	261
lapmix	313
LBE	610
lcmsPlot	226
ldblock	472
LEA	1159
leapR	169
LedPred	370
lefser	990
lemur	409
les	543
levi	377
lfa	525
Lheuristic	229
limma	42915
limmaGUI	667
limpa	360
limpca	336
LimROTS	326
LINC	106
LineagePulse	154
lineagespot	321
LinkHD	416
linkSet	150
Linnorm	686
LinTInd	229
lionessR	495
lipidr	532
LipidTrend	241
LiquidAssociation	493
lisaClust	519
lmdme	508
LMGene	284
lncRna	190
LOBSTAHS	447
loci2path	452
logicFS	546
logitT	249
Logolas	91
lol	124
LOLA	726
looking4clusters	247
LoomExperiment	872
LowMACA	208
LPE	541
LPEadj	249
lpNet	417
lpsymphony	1691
LRBaseDbi	419
LRcell	407
LRDE	145
lumi	1890
lute	95
LVSmiRNA	201
LymphoSeq	528
M3C	854
M3D	174
M3Drop	739
m6Aboost	404
maanova	343
Maaslin2	1380
maaslin3	581
Macarron	311
macat	414
maCorrPlot	497
MACPET	145
MACSQuantifyR	347
MACSr	399
maDB	132
made4	886
MADSEQ	337
maftools	3273
MAGAR	404
MAGeCKFlute	311
magpie	422
magrene	353
MAI	410
maigesPack	395
MAIT	467
makecdfenv	835
makePlatformDesign	46
MANOR	529
manta	224
MantelCorr	457
MAPFX	343
mAPKL	243
maPredictDSC	429
mapscape	386
mariner	370
markeR	295
marr	429
marray	2697
martini	443
maser	607
maSigPro	926
maskBAD	526
MassArray	399
massiR	557
MassSpecWavelet	2684
MAST	3227
mastR	464
matchBox	396
matchprobes	93
MatrixGenerics	50687
MatrixQCvis	448
MatrixRider	520
matter	778
MaxContrastProjection	78
MBAmethyl	325
MBASED	584
MBCB	429
MBECS	386
mbkmeans	1082
mbOmic	43
mBPCR	591
MBQN	423
mbQTL	288
MBttest	487
mcaGUI	173
MCbiclust	601
MCRestimate	194
mCSEA	592
mdgsa	197
mdp	446
mdqc	498
MDSvis	166
MDTS	380
MEAL	648
MeasurementError.cor	386
MEAT	532
MEB	439
MEDIPS	750
MEDME	550
megadepth	448
MEIGOR	487
Melissa	284
MeLSI	164
memes	567
MergeMaid	282
Mergeomics	477
MeSHDbi	685
meshes	575
meshr	642
MeSHSim	51
MesKit	556
messina	520
metaArray	264
Metab	225
metabCombiner	435
metabinR	396
MetaboAnnotation	569
MetaboAnnotatoR	181
MetaboCoreUtils	3646
MetaboDynamics	311
metabolomicsWorkbenchR	479
metabom8	179
metabomxtr	475
MetaboSignal	620
metaCCA	364
MetaCyto	431
MetaDICT	252
metagene	383
metagene2	595
metagenomeFeatures	151
metagenomeSeq	2491
metahdep	404
metaMS	616
MetaNeighbor	367
MetaPathNet	33
MetaPhOR	386
metapod	7995
metapone	414
MetaProViz	208
metaSeq	529
metaseqR	241
metaseqR2	589
metavizr	180
MetaVolcanoR	151
metaX	42
MetCirc	487
MethCP	124
methimpute	508
methInheritSim	487
methodical	335
MethPed	582
MethReg	437
methrix	617
MethTargetedNGS	410
methVisual	201
methyAnalysis	254
MethylAid	680
methylCC	577
methylclock	605
methylGSA	594
methyLImp2	318
methylInheritance	532
methylKit	1456
MethylMix	603
methylMnM	589
methylPipe	655
methylscaper	439
MethylSeekR	754
methylSig	511
methylumi	2210
methyvim	92
MetID	378
MetMashR	312
MetNet	581
mfa	319
Mfuzz	1949
MGFM	529
MGFR	448
MGnifyR	379
mgsa	517
mia	2539
miaDash	291
miaSim	399
miaTime	349
miaViz	744
MiChip	514
microbiome	2812
microbiomeDASim	364
microbiomeExplorer	441
microbiomeMarker	472
MicrobiomeProfiler	397
MicrobiotaProcess	865
microRNA	1191
microSTASIS	98
MICSQTL	355
midasHLA	344
MIGSA	212
miloR	1646
mimager	501
MIMOSA	227
mina	335
MineICA	543
minet	1240
minfi	3384
MinimumDistance	718
MiPP	557
miQC	562
MIRA	553
MiRaGE	742
miRBaseConverter	609
miRcomp	550
mirIntegrator	559
MIRit	373
miRLAB	536
miRmine	240
miRNAmeConverter	407
miRNApath	427
miRNAtap	583
miRSM	549
miRsponge	53
miRspongeR	470
Mirsynergy	131
mirTarRnaSeq	430
missMethyl	1629
missRows	427
mist	280
mistyR	460
mitch	447
mitoClone2	399
mitology	341
mitoODE	129
mixOmics	4936
MLInterfaces	1199
mlm4omics	32
MLP	763
MLSeq	627
MMAPPR2	92
MMDiff	137
MMDiff2	610
mmgmos	42
mmnet	91
MmPalateMiRNA	203
MMUPHin	531
mnem	543
moanin	378
mobileRNA	347
MobilityTransformR	82
MODA	404
ModCon	296
Modstrings	553
MOFA	64
MOFA2	1607
MOGAMUN	346
mogsa	701
MoleculeExperiment	331
MOMA	493
monaLisa	660
monocle	4170
Moonlight2R	413
MoonlightR	586
MoPS	129
mosaics	768
mosbi	309
MOSClip	345
mosdef	592
MOSim	562
Motif2Site	430
motifbreakR	602
motifcounter	338
MotifDb	1421
motifmatchr	2259
MotifPeeker	277
motifRG	200
motifStack	1345
motifTestR	380
MotIV	253
MouseFM	386
MPAC	278
MPFE	327
mpra	579
MPRAnalyze	434
MQmetrics	102
mQTL.NMR	125
msa	2650
MSA2dist	426
MsBackendMassbank	409
MsBackendMassIVE	26
MsBackendMetaboLights	303
MsBackendMetabolomicsWorkbench	26
MsBackendMgf	1076
MsBackendMsp	657
MsBackendRawFileReader	410
MsBackendSql	413
MsCoreUtils	4732
MsDataHub	461
MSEADbi	26
MsExperiment	1963
MsFeatures	2218
msgbsR	475
MSGFgui	182
MSGFplus	155
msImpute	450
mslp	249
msmsEDA	615
msmsTests	658
MSnbase	4832
MSnID	830
mspms	362
MSPrep	330
msPurity	487
msqrob2	619
MsQuality	395
MsStash	35
MSstats	1206
MSstatsBig	285
MSstatsBioNet	297
MSstatsConvert	952
MSstatsLiP	464
MSstatsLOBD	306
MSstatsPTM	613
MSstatsQC	432
MSstatsQCgui	296
MSstatsResponse	276
MSstatsSampleSize	128
MSstatsShiny	404
MSstatsTMT	760
MSstatsTMTPTM	36
MSTree	41
MTseeker	53
MuData	421
Mulcom	553
MultiAssayExperiment	8906
MultiBaC	389
multiClust	520
multicrispr	489
MultiDataSet	2429
multiGSEA	511
multiHiCcompare	626
MultiMed	437
multiMiR	1162
MultimodalExperiment	393
MultiOmicsBridge	48
multiOmicsViz	188
MultipleAlignment	72
multipointR	23
MultiRNAflow	386
multiscan	524
multiSight	102
multistateQTL	314
multiWGCNA	361
multtest	13741
mumosa	455
MungeSumstats	984
muscat	1467
muscle	780
musicatk	540
MutationalPatterns	906
mutscan	315
MutSeqR	251
MVCClass	514
mvGST	112
MWASTools	591
mygene	781
myvariant	561
mzID	4204
mzR	5028
NADfinder	624
NanoMethViz	506
NanoStringDiff	472
NanoStringNCTools	880
NanoStringQCPro	222
nanotatoR	147
NanoTube	454
NarrowPeaks	192
NBAMSeq	416
NBSplice	134
ncdfFlow	2119
ncGTW	411
NCIgraph	356
ncRNAtools	416
ndexr	378
neaGUI	96
nearBynding	328
Nebulosa	1737
NeighborNet	142
nem	395
nempi	375
NetActivity	378
netbenchmark	105
netbiov	239
netboost	349
netboxr	93
netDx	124
nethet	516
netOmics	122
NetPathMiner	470
netprioR	336
netReg	75
netresponse	570
NetSAM	516
netSmooth	531
networkBMA	190
netZooR	187
NeuCA	132
NewWave	396
NGScopy	125
ngsReports	511
nipalsMCIA	407
nnNorm	522
nnSVG	533
NOISeq	1005
nondetects	506
NoRCE	463
normalize450K	467
NormalyzerDE	649
NormqPCR	579
normr	653
notame	297
notameStats	230
notameViz	269
NPARC	444
npGSEA	594
NTW	406
nucleoSim	471
nucleR	750
nuCpos	392
nudge	180
nullranges	572
NuPoP	489
NxtIRFcore	126
OAtools	186
occugene	401
OCplus	624
octad	427
ODER	86
odseq	387
OGRE	411
OGSA	132
oligo	3710
oligoClasses	2996
OLIN	695
OLINgui	538
omada	233
OmaDB	530
omicade4	665
OmicCircos	597
omicplotR	357
omicRexposome	545
omicsGMF	274
OmicsLonDA	141
OmicsMarkeR	123
OmicsMLRepoR	209
OMICsPCA	531
omicsPrint	570
omicsViewer	406
Omixer	343
OmnipathR	2129
ompBAM	368
omXplore	341
Onassis	121
oncomix	422
oncoscanR	356
OncoScore	469
OncoSimulR	504
oneChannelGUI	223
oneSENSE	127
onlineFDR	320
ontoCAT	141
ontoProc	606
ontoProc2	48
ontoTools	124
openCyto	1636
openPrimeR	578
openPrimeRui	158
OpenStats	306
OperaMate	63
oposSOM	525
oppar	590
oppti	153
optimalFlow	361
OPWeight	431
OrderedList	570
ORFhunteR	408
ORFik	766
OrganismDbi	3554
Organism.dplyr	457
orthogene	1027
orthos	376
OSAT	495
Oscope	546
OSTA.data	352
OTUbase	633
OutlierD	229
OUTRIDER	748
OutSplice	403
OVESEG	447
PAA	641
packFinder	452
padma	432
PADOG	711
pageRank	351
PAIRADISE	452
paircompviz	437
pairedGSEA	358
pairkat	381
pairseqsim	21
pamr	123
pandaR	594
panelcn.mops	542
PAnnBuilder	157
PanomiR	430
panoramic	58
panp	690
PANR	509
PanViz	120
PanVizGenerator	132
PAPi	179
parati	190
pareg	94
parglms	496
parody	548
partCNV	212
PAST	482
Path2PPI	470
pathifier	456
pathlinkR	391
pathMED	174
PathNet	451
PathoStat	517
pathprint	85
pathRender	560
pathVar	215
pathview	5539
pathwayPCA	475
PathwaySplice	137
PatientGeneSets	40
paxtoolsr	223
Pbase	182
pbcmc	83
pcaExplorer	812
pcaGoPromoter	149
pcaMethods	6955
PCAN	546
PCAtools	1567
pcot2	316
PCpheno	329
pcxn	132
PDATK	463
pdInfoBuilder	792
pdmclass	239
PeacoQC	712
peakCombiner	257
peakPantheR	417
PECA	511
peco	429
Pedixplorer	351
pengls	285
PepSetTest	278
PepsNMR	467
pepStat	581
pepXMLTab	411
PERFect	133
periodicDNA	538
perturbatr	88
pfamAnalyzeR	510
PFP	81
PGA	256
pgca	294
pgen2gds	46
PGSEA	385
pgUtils	70
pgxRpi	248
phantasus	544
phantasusLite	313
PharmacoGx	918
phemd	191
phenoDist	144
PhenoGeneRanker	237
phenomis	321
phenopath	627
phenoTest	732
PhenStat	311
philr	668
PhIPData	438
phosphonormalizer	366
PhosR	682
phylobar	63
PhyloProfile	469
phyloseq	7797
Pi	259
piano	1128
PICB	343
pickgene	444
PICS	458
Pigengene	560
PING	429
PinPath	71
pint	147
pipeComp	508
pipeFrame	472
PIPETS	270
Pirat	322
PIUMA	317
pkgDepTools	311
plaid	190
planet	562
planttfhunter	347
plasmut	263
plateCore	250
plethy	271
plgem	702
plier	622
PlinkMatrix	199
PloGO2	128
plotgardener	632
plotGrouper	369
PLPE	486
plrs	219
PLSDAbatch	345
plw	239
plyinteractions	412
plyranges	1653
plyxp	451
pmm	350
pmp	529
PMScanR	256
PoDCall	349
podkat	736
poem	321
pogos	461
polyester	389
Polyfit	142
PolySTest	320
Polytect	254
POMA	556
posDemux	212
POST	82
PostChicago	50
postNet	271
PoTRA	89
PowerExplorer	71
powerTCR	581
POWSC	422
ppcseq	404
PPInfer	468
ppiStats	367
pqsfinder	692
prada	295
pram	531
prebs	573
preciseTAD	556
PrecisionTrialDrawer	93
PREDA	687
predictionet	157
preprocessCore	17927
primirTSS	531
PrInCE	424
Prize	86
proActiv	576
proBAMr	555
proBatch	427
PROcess	555
procoil	635
ProCoNA	155
proDA	684
proFIA	174
profileplyr	602
profileScoreDist	412
progeny	1484
projectR	538
pRoloc	1163
pRolocGUI	606
PROMISE	489
PRONE	365
PROPER	563
PROPS	472
Prostar	509
prot2D	167
proteasy	83
proteinProfiles	354
ProteoDisco	516
ProteomicsAnnotationHubData	144
ProteoMM	446
proteoQC	142
protGear	426
ProtGenerics	12905
PSEA	270
psichomics	624
PSICQUIC	205
PSMatch	3526
psygenet2r	275
ptairMS	480
PTMods	824
PubScore	81
pulsedSilac	88
puma	789
PureCN	848
pvac	505
pvca	724
Pviz	556
pwalign	8986
PWMEnrich	838
pwOmics	360
pwrEWAS	105
qckitfastq	166
qcmetrics	705
QDNAseq	958
QFeatures	4177
qmtools	403
qpcrNorm	564
qpgraph	1009
qPLEXanalyzer	544
qrqc	292
QRscore	281
qsea	609
qsmooth	511
QSutils	507
qsvaR	404
QTLExperiment	344
Qtlizer	373
QUALIFIER	193
quantiseqr	1409
quantMSImageR	4
quantro	841
quantsmooth	1034
QuartPAC	237
QuasR	1122
QuaternaryProd	320
QUBIC	468
queeems	167
qusage	918
qvalue	26468
R3CPET	551
r3Cseq	721
R453Plus1Toolbox	661
R4RNA	1103
RadioGx	502
raer	458
RaggedExperiment	1528
RAIDS	372
rain	564
rama	292
RamiGO	111
ramr	453
ramwas	608
RandomWalkRestartMH	166
randPack	476
randRotation	270
RankMap	178
RankProd	815
RAREsim	289
RareVariantVis	606
Rariant	254
Rarr	686
rawDiag	289
rawrr	458
RbcBook1	824
Rbec	259
RBedMethyl	206
RBGL	10477
RBioFormats	571
RBioinf	389
rBiopaxParser	1010
rBLAST	388
RBM	441
Rbowtie	863
Rbowtie2	622
RbowtieCuda	113
RBPSpecificity	47
rbsurv	512
Rbwa	265
Rcade	359
RCAS	664
RCASPAR	359
rcellminer	627
rCGH	801
Rchemcpp	185
RchyOptimyx	170
RcisTarget	1631
RCM	489
Rcollectl	127
Rcpi	619
RCSL	378
Rcwl	407
RcwlPipelines	365
RCX	384
RCy3	1430
RCyjs	532
RCytoscape	117
RDAVIDWebService	189
Rdbi	91
RdbiPgSQL	36
rDGIdb	171
Rdisop	1177
RDRToolbox	504
ReactomeContentService4R	102
ReactomeGraph4R	81
ReactomeGSA	560
ReactomePA	6164
readat	108
ReadqPCR	589
reb	307
REBET	337
rebook	407
receptLoss	145
reconsi	296
recount	996
recount3	1217
recountmethylation	532
recoup	702
RedeR	804
RedisParam	321
REDseq	583
ReducedExperiment	327
RefNet	178
RefPlus	424
Rega	165
RegEnrich	499
regionalpcs	279
RegionalST	399
regioneR	2621
regioneReloaded	364
regionReport	687
regsplice	480
regutools	492
REMP	544
Repitools	587
ReportingTools	1259
reposTools	39
RepViz	378
ReQON	282
ResidualMatrix	5212
RESOLVE	378
Resourcerer	106
restfulSE	245
retrofit	340
ReUseData	283
rexposome	650
rfaRm	423
Rfastp	478
RFGeneRank	110
RFLOMICS	348
rflowcyt	136
rfPred	580
rGADEM	519
RGalaxy	217
rGenomeTracks	313
Rgin	87
RGMQL	110
RgnTX	181
rgoslin	440
RGraph2js	488
Rgraphviz	10756
rGREAT	1249
RGSEA	540
rgsepd	594
rhdf5	26484
rhdf5client	505
rhdf5filters	25162
Rhdf5lib	27671
rhinotypeR	298
Rhisat2	531
Rhtslib	27141
rHVDM	300
RiboCrypt	447
RiboDiPA	454
RiboProfiling	462
ribor	417
riboSeqR	643
ribosomeProfilingQC	573
rifi	343
rifiComparative	305
Rigraphlib	2077
rigvf	209
RImmPort	378
Ringo	545
Rintact	58
RIPAT	138
RIPSeeker	222
Risa	371
RITAN	438
RIVER	474
RJMCMCNucleosomes	527
RLassoCox	306
RLMM	435
RLSeq	103
RMAGEML	49
Rmagpie	512
RMAPPER	80
RMassBank	731
rMAT	179
rmelting	360
RmiR	191
Rmmquant	441
rmspc	382
RmzTabM	27
RNAAgeCalc	511
RNAdecay	340
rnaEditr	436
RNAinteract	284
RNAither	269
RNAmodR	553
RNAmodR.AlkAnilineSeq	479
RNAmodR.ML	497
RNAmodR.RiboMethSeq	441
RNAprobR	163
RNAsense	399
rnaseqcomp	491
RNAseqCovarImpute	333
rnaSeqMap	288
RNASeqPower	504
RNASeqR	108
RnaSeqSampleSize	526
RNAshapeQC	203
RnBeads	891
Rnits	547
roar	625
roastgsa	367
ROC	1836
ROCpAI	366
RolDE	341
Roleswitch	177
Rolexa	133
rols	1036
ROntoTools	691
ropls	2480
ROSeq	483
ROTS	674
RPA	607
rprimer	445
RProtoBufLib	3360
RpsiXML	408
rpx	1038
Rqc	818
rqt	406
rqubic	422
rRDP	357
Rredland	48
RRHO	463
rrvgo	1160
Rsamtools	30288
rsbml	482
rScudo	470
rsemmed	351
RSeqAn	361
rSFFreader	155
RSNPper	61
Rsubread	2571
RSVSim	610
rSWeeP	385
rTANDEM	194
RTCA	477
RTCGA	932
RTCGAToolbox	1140
RTN	682
RTNduals	437
RTNsurvival	465
RTools4TB	32
RTopper	621
Rtpca	414
rtracklayer	24920
Rtreemix	376
rTRM	700
rTRMui	486
RUCova	342
runibic	261
Ruuid	96
RUVcorr	460
RUVnormalize	472
RUVSeq	1445
Rvisdiff	362
RVS	405
RWebServices	51
rWikiPathways	748
S4Arrays	50845
S4Cartographer	43
S4Vectors	70190
safe	1204
SAGElyzer	49
sagenhaft	516
SAGx	295
SAIGEgds	436
samExploreR	73
sampleClassifier	394
SamSPECTRAL	510
sangeranalyseR	599
sangerseqR	1056
SanityR	266
SANTA	531
sapFinder	190
saps	37
SARC	106
sarks	408
saseR	344
satuRn	787
savR	144
SBGNview	496
sbgr	13
SBMLR	520
SC3	974
scafari	360
Scale4C	487
ScaledMatrix	16457
scAlign	115
scanMiR	443
scanMiRApp	461
scAnnotatR	408
SCAN.UPC	688
SCANVIS	361
SCArray	460
SCArray.sat	326
SCATE	100
scater	11044
scatterHatch	295
scBatchQC	45
scBFA	433
SCBN	334
scBubbletree	395
scCB2	424
scClassifR	51
scClassify	549
sccomp	517
scCompoundDE	41
scConform	190
scDataviz	460
scDblFinder	4681
scDD	692
scDDboost	379
scde	876
scDesign3	378
scDiagnostics	361
scDotPlot	361
scds	1182
scECODA	246
SCFA	374
scFastDE	45
scFeatureFilter	464
scFeatures	435
scfind	66
scGPS	501
scGraphVerse	259
schex	519
scHiCcompare	275
scHOT	488
scider	363
scifer	376
ScISI	370
scLANE	297
scLang	214
scMAGeCK	69
scmap	915
scMerge	826
scMET	396
scmeth	533
scMitoMut	296
scMultiSim	377
SCnorm	620
scone	657
Sconify	412
SCOPE	470
scoreInvHap	489
scoup	273
scp	579
scPassport	151
scPCA	494
scPipe	580
scQTLtools	284
scran	8655
scrapper	2284
scReClassify	434
scRecover	406
screenCounter	359
ScreenR	337
scRepertoire	1169
scRNAseqApp	434
scruff	573
scry	750
scShapes	280
scsR	172
scTensor	504
scTGIF	512
scTHI	380
scToppR	217
scTreeViz	445
scTypeEval	190
scuttle	12844
scviR	247
SDAMS	402
seahtrue	323
sechm	477
segmenter	456
segmentSeq	744
selectKSigs	339
SELEX	510
SemDist	546
semisup	357
SEMPLR	244
SemSim	56
SEPA	84
SEPIRA	198
seq2pathway	454
seqArchR	185
seqArchRplus	162
SeqArray	1558
seqbias	314
seqCAT	519
seqCNA	219
seqcombo	337
SeqGate	375
SeqGSEA	639
seq.hotSPOT	276
Seqinfo	39920
seqLogo	4158
seqPattern	1374
seqplots	232
seqsetvis	574
SeqSQC	595
Seqtometry	190
seqTools	323
SeqVarTools	1068
SEraster	290
sesame	1380
SETA	270
SEtools	442
sevenbridges	522
sevenC	564
sfi	207
SGCP	261
SGSeq	875
SharedObject	475
shinybiocloader	201
shinyDSP	326
shinyepico	460
shiny.gosling	266
shinyMethyl	647
shinyTANDEM	139
ShortRead	7516
SIAMCAT	514
SICtools	451
sigaR	190
SigCheck	547
sigFeature	608
SigFuge	364
siggenes	4281
sights	437
signatureSearch	597
signeR	636
signet	55
signifinder	382
sigPathway	313
SigsPack	469
sigsquared	441
SIM	526
SIMAT	470
SimBindProfiles	256
SimBu	363
SIMD	358
SimFFPE	414
SimiCviz	31
similaRpeak	538
SIMLR	646
simona	1182
simPIC	365
simpleaffy	352
simpleSeg	543
simplifyEnrichment	1611
simulatorAPMS	70
simulatorZ	190
sincell	520
singIST	136
single	168
SingleCellAlleleExperiment	360
SingleCellExperiment	22784
SingleCellSignalR	607
singleCellTK	842
SingleMoleculeFootprinting	286
SingleR	6291
singscore	2522
SiPSiC	287
SISPA	167
sitadela	405
Site2Target	279
sitePath	409
sizepower	453
SJava	46
sketchR	358
skewr	514
slalom	299
SLGI	351
slingshot	3908
slinky	115
SLqPCR	420
SMAD	347
SMAP	303
smartid	302
SmartPhos	177
SMITE	602
smoothclust	307
smoppix	287
SMTrackR	208
SNAGEE	416
snapCGH	429
snapcount	413
snifter	810
snm	508
SNPchip	322
SNPediaR	353
SNPhood	716
snpMatrix	64
SNPRelate	2572
snpStats	2933
soGGi	570
sojourner	102
SomatiCA	106
SomaticSignatures	677
SOMNiBUS	390
sosta	393
SpaceMarkers	325
SpacePAC	323
SpaceTrooper	340
spacexr	672
spade	97
Spaniel	499
SpaNorm	416
spARI	247
sparrow	705
SparseArray	56902
sparseDOSSA	164
sparseMatrixStats	20110
sparsenetgls	342
SparseSignatures	526
spaSim	390
SpatialArtifacts	222
SpatialCPie	425
spatialdataR	1
spatialDE	475
SpatialDecon	576
SpatialExperiment	9644
SpatialExperimentIO	360
spatialFDA	315
SpatialFeatureExperiment	594
spatialHeatmap	372
SpatialOmicsOverlay	415
spatialSimGP	273
spatzie	173
speckle	878
specL	544
SpeCond	533
Spectra	4149
SpectralTAD	452
SpectraQL	280
SpectriPy	277
SPEM	473
SPIA	1408
SPIAT	464
SPICEY	276
spicyR	625
SpidermiR	200
SpiecEasi	284
spikeLI	465
spiky	379
spillR	299
spkTools	521
splatter	1107
splicegear	241
SpliceImpactR	203
splicelogic	177
spliceR	189
spliceSites	166
SpliceWiz	571
SplicingFactory	344
SplicingGraphs	686
SplineDV	314
splineTCDiffExpr	6
splineTimeR	508
SPLINTER	546
splots	563
SpNeigh	218
SPONGE	587
spoon	292
SpotClean	430
SPOTlight	785
spotSegmentation	162
SpotSweeper	491
spqn	442
SPsimSeq	452
SQLDataFrame	202
SQUADD	208
squallms	282
sRACIPE	476
SRAdb	929
sRAP	139
SRGnet	92
srnadiff	518
sscore	347
sscu	467
sSeq	528
ssize	496
sSNAPPY	433
SSPA	329
ssPATHS	403
ssrch	363
ssviz	501
StabMap	333
STADyUM	269
stageR	707
stam	72
STAN	245
standR	544
staRank	229
StarBioTrek	220
staRgate	220
Starr	258
STATegRa	707
StatescopeR	223
Statial	426
statTarget	613
STdeconvolve	129
stepNorm	499
stepwiseCM	116
stJoincount	288
stPipe	311
strandCheckR	472
Streamer	382
STRINGdb	3958
STROMA4	236
struct	558
Structstrings	503
structToolbox	487
StructuralVariantAnnotation	623
SubCellBarCode	446
subSeq	607
SUITOR	313
SummarizedBenchmark	245
SummarizedExperiment	51236
Summix	271
SuperCellCyto	292
supersigs	401
supraHex	451
surfaltr	425
SurfR	325
survClust	267
survcomp	2128
survtype	371
Sushi	293
sva	10633
svaNUMT	436
SVAPLSseq	114
svaRetro	455
SVM2CRM	125
SVMDO	303
SVP	308
SWATH2stats	477
SwathXtend	290
swfdr	466
SwimR	152
switchBox	439
switchde	474
synapsis	376
synapter	447
synergyfinder	580
SynExtend	455
synlet	412
SynMut	374
syntenet	501
systemPipeR	2028
systemPipeShiny	431
systemPipeTools	413
tadar	358
TADCompare	398
tanggle	415
TAPseq	518
target	476
TargetDecoy	409
TargetScore	492
TargetSearch	499
TarSeqQC	223
TaxSEA	287
TBSignatureProfiler	546
TCC	802
TCGAbiolinks	6466
TCGAbiolinksGUI	118
TCGAutils	1331
TCseq	894
TDARACNE	220
TDbasedUFE	331
TDbasedUFEadv	366
TEKRABber	413
TENET	325
TENxIO	561
tenXplore	518
TEQC	650
terapadog	294
ternarynet	431
terraTCGAdata	334
TFARM	409
TFBSTools	4231
TFEA.ChIP	666
TFHAZ	567
TFutils	637
TiDEomics	66
tidybulk	757
tidyCoverage	378
tidyexposomics	247
tidyFlowCore	276
tidyomics	279
tidyprint	200
tidysbml	243
tidySingleCellExperiment	713
tidySpatialExperiment	417
tidySummarizedExperiment	602
tidytof	66
tigre	641
TileDBArray	415
tilingArray	790
timecourse	735
timeOmics	442
timescape	328
TimeSeriesExperiment	131
TimiRGeN	141
TIN	548
TissueEnrich	609
TitanCNA	392
tkWidgets	2365
tLOH	326
TMixClust	463
TMSig	314
TNBC.CMS	145
TnT	484
TOAST	1064
tofsims	134
tomoda	389
tomoseqr	350
TOP	335
ToPASeq	144
topconfects	570
topdownr	540
topGO	2875
toppgene	109
ToxicoGx	542
TPP	716
TPP2D	451
tpSVG	323
tracktables	634
trackViewer	1285
tradeSeq	1814
TraianProt	41
TrajectoryGeometry	285
TrajectoryUtils	3939
transcriptogramer	578
transcriptR	614
transformGamPoi	417
transite	374
tRanslatome	612
transmogR	343
transomics2cytoscape	336
TransView	482
TraRe	80
traseR	650
Travel	26
traviz	150
TreeAndLeaf	463
treeclimbR	323
treeio	30493
treekoR	467
TreeSummarizedExperiment	3117
TREG	393
trena	254
TReNA	10
Trendy	504
TRESS	440
tricycle	822
TrIdent	251
triform	157
trigger	314
trio	566
triplex	665
tripr	420
tRNA	571
tRNAdbImport	470
tRNAscanImport	511
TRONCO	659
TSAR	293
TSCAN	1015
tscR	102
TSENAT	49
tspair	240
TSRchitect	206
TSSi	169
ttgsea	296
TTMap	496
TurboNorm	615
TVTB	602
tweeDEseq	565
twilight	662
twoddpcr	499
txcutr	391
txdbmaker	5805
tximeta	2176
tximport	5262
TxRegInfra	74
TypeInfo	279
UCell	3097
UCSC.utils	27998
Ularcirc	499
UMI4Cats	527
uncoverappLib	465
UNDO	537
unifiedWMWqPCR	469
UniProt.ws	1299
Uniquorn	558
universalmotif	1770
updateObject	411
UPDhmm	324
uSORT	544
VAExprs	345
VanillaICE	891
VarCon	446
variancePartition	2577
VariantAnnotation	9757
VariantExperiment	248
VariantFiltering	757
VariantTools	687
vasp	33
VaSP	493
vbmp	607
VCFArray	504
VDJdive	339
Vega	151
VegaMC	580
velociraptor	543
veloviz	309
VennDetail	537
VERSO	336
vidger	571
viper	1729
virtualArray	44
ViSEAGO	610
VisiumIO	482
visiumStitched	331
vissE	468
VISTA	166
vmrseq	316
Voyager	555
VplotR	509
vsclust	400
vsn	7019
vtpnet	485
vulcan	432
waddR	237
wateRmelon	1339
wavClusteR	606
waveTiling	210
wavFeatExt	143
weaver	447
webbioc	636
weitrix	593
widgetInvoke	29
widgetTools	2260
wiggleplotr	585
wpm	421
wppi	247
Wrench	2326
wSIR	40
XAItest	273
XBSeq	225
xCell2	440
XCIR	48
xcms	2964
xcore	436
XDE	722
XeniumIO	270
xenLite	324
Xeva	454
XINA	405
xmapbridge	459
xmapcore	35
XNAString	193
xps	241
XVector	61604
y2hStat	39
yamss	595
YAPSA	651
yaqcaffy	332
yarn	618
ZarrArray	182
zellkonverter	3843
zenith	525
zFPKM	435
zinbwave	1283
zitools	301
zlibbioc	22055
ZygosityPredictor	352