Package	Download_score
a4	377
a4Base	442
a4Classif	348
a4Core	397
a4Preproc	515
a4Reporting	296
ABAEnrichment	143
ABarray	430
abseqR	280
ABSSeq	421
acde	363
ACE	312
aCGH	621
ACME	583
ADaCGH2	416
ADAM	282
ADAMgui	245
ADAPT	107
adaptest	43
adductomicsR	244
ADImpute	286
adSplit	470
adverSCarial	176
Aerith	65
AffiXcan	278
affxparser	2499
affy	9351
affycomp	467
AffyCompatible	206
affyContam	376
affycoretools	738
AffyExpress	188
affyILM	374
affyio	9549
affylmGUI	509
affyPara	214
affypdnn	202
affyPLM	1577
affyQCReport	170
AffyRNADegradation	311
AffyTiling	101
AGDEX	366
aggregateBioVar	292
Agi4x44PreProcess	68
agilp	275
AgiMicroRna	469
AHMassBank	173
AIMS	731
airpart	234
alabaster	191
alabaster.base	5207
alabaster.bumpy	184
alabaster.files	186
alabaster.mae	198
alabaster.matrix	4855
alabaster.ranges	4798
alabaster.sce	1459
alabaster.schemas	4686
alabaster.se	4767
alabaster.sfe	104
alabaster.spatial	215
alabaster.string	199
alabaster.vcf	190
ALDEx2	1777
alevinQC	294
AllelicImbalance	429
AlphaBeta	279
AlphaMissenseR	215
alpine	222
ALPS	37
AlpsNMR	317
alsace	113
altcdfenvs	476
AMARETTO	312
AMOUNTAIN	281
amplican	416
ampliQueso	108
AnalysisPageServer	67
anamiR	58
anansi	107
Anaquin	283
ANCOMBC	2152
AneuFinder	328
ANF	282
anglemania	126
animalcules	411
annaffy	611
AnnBuilder	49
anndataR	788
annmap	347
annoLinker	56
annotate	20860
AnnotationDbi	44337
AnnotationFilter	12493
AnnotationForge	2386
AnnotationFuncs	130
AnnotationHub	14309
AnnotationHubData	864
annotationTools	411
annotatr	943
anota	356
anota2seq	387
antiProfiles	276
AnVIL	879
AnVILAz	159
AnVILBase	648
AnVILBilling	208
AnVILGCP	175
AnVILPublish	203
AnVILVRS	11
AnVILWorkflow	164
APAlyzer	251
apComplex	446
apeglm	6105
APL	232
applera	27
appreci8R	315
aroma.light	2025
ArrayExpress	694
ArrayExpressHTS	141
arrayMagic	108
arrayMvout	432
arrayQCplot	17
arrayQuality	474
arrayQualityMetrics	750
ArrayTools	208
ArrayTV	144
ARRmNormalization	273
artMS	333
ASAFE	219
ASEB	269
ASGSCA	285
ASICS	399
asmn	22
ASpediaFI	87
ASpli	476
AssessORF	313
ASSET	351
ASSIGN	419
assorthead	17191
ASURAT	277
asuri	73
ATACCoGAPS	57
atacInferCnv	30
ATACseqQC	689
ATACseqTFEA	258
atena	252
AtlasRDF	46
atSNP	325
attract	461
AUCell	3842
augere.core	11
augere.de	12
augere.gsea	12
augere.screen	11
augere.solo	11
autonomics	297
Autotuner	47
AWAggregator	105
AWFisher	255
awst	233
BaalChIP	319
BAC	176
bacon	436
BADER	290
BadRegionFinder	317
BAGS	296
ballgown	1905
bambu	549
BamScale	7
bamsignals	1546
BANDITS	291
bandle	259
Banksy	579
banocc	219
barbieQ	153
barcodetrackR	152
basecallQC	288
BaseSpaceR	315
Basic4Cseq	362
BASiCS	529
BASiCStan	190
BasicSTARRseq	286
basilisk	4808
basilisk.utils	3385
batchCorr	134
BatChef	24
batchelor	4987
BatchQC	378
BatchSVG	158
Battlefield	41
BayesKnockdown	243
BayesPeak	139
BayesSpace	715
bayNorm	312
baySeq	808
BBCAnalyzer	363
BCRANK	512
bcSeq	239
BDMMAcorrect	105
beachmat	19988
beachmat.hdf5	308
beachmat.tiledb	127
beadarray	967
beadarraySNP	255
BeadDataPackR	766
BeadExplorer	24
BEARscc	147
BEAT	426
BEclear	291
bedbaser	180
beer	231
benchdamic	183
BenchHub	4
BERT	163
betaHMM	172
betr	126
betterChromVAR	41
bettr	179
BG2	183
bgafun	169
BgeeCall	313
BgeeDB	351
BGmix	184
bgx	305
BHC	194
BicARE	425
BiFET	245
BiGGR	208
bigmelon	368
bigmemoryExtras	95
bigPint	124
bim	23
BindingSiteFinder	281
bioassayR	365
Biobase	60057
biobroom	496
biobtreeR	200
bioCancer	349
BioCartaImage	167
BiocAzul	20
BiocBaseUtils	12616
BiocBook	208
BiocBuildReporter	39
BiocCaseStudies	213
BiocCheck	2389
biocDatasets	13
BiocDockerManager	66
BiocFHIR	212
BiocFileCache	29387
BiocGenerics	70429
Bioc.gff	109
biocGraph	476
BiocHail	130
BiocHubsShiny	199
BiocInstaller	211
BiocIO	21631
BiocMaintainerApp	35
biocmake	3160
BiocNeighbors	14051
BiocOncoTK	182
BioCor	345
BiocParallel	60014
BiocPkgDash	40
BiocPkgTools	494
biocroxytest	149
BiocSet	630
BiocSingular	16378
BiocSklearn	281
BiocStyle	7675
biocthis	769
BiocVersion	72199
biocViews	5337
BiocWorkflowTools	330
biodb	372
biodbChebi	201
biodbExpasy	55
biodbHmdb	136
biodbKegg	83
biodbLipidmaps	60
biodbMirbase	44
biodbNcbi	126
biodbNci	115
biodbUniprot	120
bioDist	522
BioGA	146
biomaRt	24179
BioMedR	19
biomformat	7218
BioMM	99
BioMVCClass	357
biomvRCNS	364
BioNAR	230
BioNERO	411
BioNet	661
BioNetStat	118
BioQC	413
BioSeqClass	143
biosigner	328
Biostrings	54515
biosvd	108
BioTIP	265
biotmle	308
biovizBase	6266
BiRewire	350
birta	133
birte	89
biscuiteer	317
BiSeq	475
BitSeq	276
blacksheepr	263
blase	112
blima	337
BLMA	374
BloodGen3Module	237
bluster	8565
bnbc	327
bnem	255
BOBaFIT	225
borealis	228
BPRMeth	332
BRAIN	427
brainflowprobes	102
brainImageR	20
BrainSABER	73
BrainStars	130
branchpointer	328
breakpointR	314
BreastSubtypeR	161
brendaDb	266
BREW3R.r	178
BRGenomics	208
bridge	206
BridgeDbR	332
broadSeq	137
BrowserViz	363
BrowserVizDemo	23
BSgenome	13854
BSgenomeForge	340
bsseq	1941
BubbleTree	265
BufferedMatrix	300
BufferedMatrixMethods	302
bugsigdbr	633
BulkSignalR	273
BUMHMM	301
bumphunter	3083
BumpyMatrix	838
BUS	349
BUScorrect	282
BUSpaRse	466
BUSseq	280
CaDrA	168
CAEN	208
CAFE	455
CAGEfightR	472
cageminer	250
CAGEr	581
CALIB	169
CalibraCurve	107
calm	190
CAMERA	909
CAMTHC	46
CaMutQC	177
canceR	334
cancerclass	606
CancerInSilico	115
CancerMutationAnalysis	155
CancerSubtypes	200
CAnD	131
caOmicsV	186
cardelino	260
Cardinal	641
CardinalIO	318
CARDspa	226
carnation	46
CARNIVAL	379
casper	419
CATALYST	779
Category	1754
categoryCompare	450
CatsCradle	172
CausalR	300
cbaf	292
CBEA	84
cBioPortalData	774
CBN2Path	95
CBNplot	258
cbpManager	245
CCAFE	169
ccfindR	264
ccImpute	221
ccmap	209
CCPlotR	222
CCPROMISE	275
ccrepe	361
CDI	204
celaref	331
celda	1347
CellaRepertorium	109
CellBarcode	275
cellbaseR	341
CellBench	377
cellGrowth	128
cellHTS	190
cellHTS2	376
CelliD	397
cellity	334
CellMapper	285
CellMentor	58
cellmig	126
cellmigRation	218
CellMixS	432
cellNexus	3
CellNOptR	473
cellscape	210
CellScore	154
CellTrails	319
cellTree	213
cellxgenedp	245
CEMiTool	402
censcyt	233
Cepo	371
ceRNAnetsim	210
CeTF	332
CexoR	403
CFAssay	226
cfdnakit	237
cfDNAPro	300
cfTools	160
CGEN	290
CGHbase	755
CGHcall	728
cghMCR	425
CGHnormaliter	354
CGHregions	372
CGRphylo2	1
ChAMP	1024
CHARGE	39
charm	173
ChemmineOB	604
ChemmineR	1237
CHETAH	299
chevreulPlot	146
chevreulProcess	161
chevreulShiny	146
ChIC	81
Chicago	354
chihaya	264
chimera	191
chimeraviz	421
ChIPanalyser	343
ChIPComp	326
chipenrich	442
ChIPexoQual	348
ChIPpeakAnno	1360
ChIPQC	593
ChIPseeker	3017
chipseq	965
ChIPseqR	450
ChIPSeqSpike	60
ChIPsim	416
ChIPXpress	315
chopsticks	325
chroGPS	167
Chromatograms	126
chromDraw	277
ChromHeatMap	383
ChromoViz	57
chromPlot	370
ChromSCape	295
chromstaR	301
chromswitch	133
chromVAR	1578
CHRONOS	303
cicero	582
cigarillo	10785
CIMICE	215
CINdex	240
circRNAprofiler	362
CircSeqAlignTk	198
cisPath	168
CiteFuse	297
CLAMP	1
ClassifyR	602
cleanUpdTSeq	451
CleanUpRNAseq	198
cleaver	547
clevRvis	178
clippda	358
clipper	514
cliProfiler	224
cliqueMS	283
Clomial	269
Clonality	172
ClonalSim	28
clonotypeR	122
clst	320
clstutils	309
CluMSID	275
ClustAll	172
clustComp	277
clusterExperiment	636
ClusterFoldSimilarity	179
ClusterGVis	89
ClusterJudge	258
clusterProfiler	26799
clusterSeq	281
ClusterSignificance	266
clusterStab	363
clustifyr	413
ClustIRR	181
clustSIGNAL	155
CMA	445
cmapR	728
CNAnorm	317
CNEr	2144
cn.farms	419
cn.mops	609
CNORdt	285
CNORfeeder	367
CNORfuzzy	350
CNORode	333
CNPBayes	105
CNTools	398
CNVfilteR	275
CNVgears	76
cnvGSA	312
CNViz	192
CNVMetrics	229
CNVPanelizer	350
CNVRanger	335
CNVrd2	377
CNVtools	97
cobindR	138
CoCiteStats	314
COCOA	359
codelink	525
CODEX	427
coexnet	105
CoGAPS	494
cogena	405
cogeqc	259
Cogito	228
coGPS	303
COHCAP	173
cola	520
comapr	192
combi	248
coMET	263
coMethDMR	235
compartmap	151
COMPASS	388
compcodeR	502
CompensAID	55
compEpiTools	380
CompGO	130
ComplexHeatmap	22017
CompoundDb	615
ComPrAn	190
compSPOT	158
conclus	59
concordexR	209
condcomp	14
condiments	326
CONFESS	361
consensus	243
ConsensusClusterPlus	3388
consensusDE	267
consensusOV	326
consensusSeekeR	344
consICA	241
CONSTANd	220
contiBAIT	244
conumee	464
convert	481
copa	373
COPDSexualDimorphism	22
copynumber	346
CopyNumber450k	62
CopyNumberPlots	301
CopywriteR	215
Coralysis	181
coRdon	481
CoRegFlux	34
CoRegNet	200
CoreGx	643
Cormotif	349
CorMut	89
coRNAi	99
corral	274
CORREP	180
coseq	412
CoSIA	191
cosmiq	329
cosmo	92
cosmoGUI	44
cosmosR	316
COSNet	278
COTAN	249
CountClust	110
countsimQC	502
covEB	274
CoverageView	370
covRNA	289
CPSM	159
cpvSNP	358
cqn	576
CrcBiomeScreen	37
CRImage	440
CRISPRball	147
crisprBase	312
crisprBowtie	299
crisprBwa	185
crisprDesign	314
crisprScore	336
CRISPRseek	459
crisprseekplus	139
crisprShiny	150
CrispRVariants	440
crisprVerse	218
crisprViz	310
crlmm	686
CrossICC	23
crossmeta	232
crumblr	153
crupR	162
CSAR	419
csaw	863
csdR	185
CSOA	108
CSSP	128
CSSQ	275
ctc	547
CTdata	207
CTDquerier	436
CTexploreR	189
ctgGEM	49
cTRAP	313
ctsGE	297
CTSV	194
cummeRbund	486
CuratedAtlasQueryR	200
customCMPdb	245
customProDB	367
CVE	61
cyanoFilter	232
cycle	370
cydar	382
cypress	190
CytoDx	250
cytofast	45
cytofkit	83
CyTOFpower	196
cytofQC	164
CytoGLMM	223
cytoKernel	219
cytolib	3137
cytomapper	606
CytoMDS	187
cytoMEM	233
CytoML	932
CytoPipeline	229
CytoPipelineGUI	178
CytoTree	65
cytoviewer	247
dada2	3324
dagLogo	448
daMA	377
DAMEfinder	331
damidBind	72
DaMiRseq	386
Damsel	185
dandelionR	142
DAPAR	416
DaparToolshed	11
dar	193
DART	360
DASC	5
DASiR	71
dasper	79
DAVIDQuery	64
daVis	4
DBChIP	158
dcanr	428
DCATS	188
dce	166
dcGSA	227
DChIPRep	139
ddCt	422
ddgraph	93
ddPCRclust	277
dearseq	330
debCAM	201
debrowser	412
decemedip	66
DECIPHER	3888
deco	119
DEComplexDisease	111
decompTumor2Sig	273
DeconRNASeq	457
decontam	2260
decontX	617
DeconvoBuddies	176
deconvR	270
decoupleR	2567
DEDS	207
DeeDeeExperiment	126
DeepBlueR	160
DeepPINCS	215
deepSNV	561
DeepTarget	166
DEFormats	547
DegCre	201
DegNorm	282
DEGraph	279
DEGreport	842
DEGseq	509
DelayedArray	52695
DelayedDataFrame	298
DelayedMatrixStats	18063
DelayedRandomArray	218
DelayedTensor	227
DELocal	177
deltaCaptureC	222
deltaGseg	275
DeMAND	217
DeMixT	312
demuxmix	252
demuxSNP	216
DenoIST	51
densvis	781
DEP	951
DepecheR	266
DepInfeR	203
DeProViR	25
DEqMS	570
derfinder	916
derfinderHelper	765
derfinderPlot	464
DEScan2	351
DESeq	539
DESeq2	29936
DEsingle	421
DESpace	273
destiny	1354
DEsubs	360
DEWSeq	315
DExMA	257
DEXSeq	2144
dexus	135
DFP	365
DFplyr	173
DIAlignR	105
DiffBind	1639
diffcoexp	282
diffcyt	638
DifferentialRegulation	214
diffGeneAnalysis	276
diffHic	494
DiffLogo	299
diffloop	247
diffuStats	290
diffUTR	263
diggit	287
Dino	248
dinoR	182
Director	112
dir.expiry	8620
DirichletMultinomial	5318
discordant	317
DiscoRhythm	309
distinct	343
dittoSeq	1473
divergence	221
dks	251
DMCFB	268
DMCHMM	286
dmGsea	155
DMRcaller	418
DMRcate	1328
DMRforPairs	178
DMRScan	349
dmrseq	540
DNABarcodeCompatibility	200
DNABarcodes	347
DNAcopy	4469
DNAcycP2	151
dnaEPICO	11
DNAfusion	232
DNaseR	31
DNAshapeR	456
DNEA	135
domainsignatures	100
dominatR	69
DominoEffect	272
dominoSignal	185
doppelgangR	349
DOQTL	135
Doscheda	307
DOSE	26161
doseR	302
DOtools	91
DOTSeq	62
doubletrouble	265
dpeak	84
drawProteins	337
dreamlet	366
DRIMSeq	670
DriverNet	274
DropletUtils	3094
drugfindR	56
drugTargetInteractions	240
DrugVsDisease	349
dSimer	78
DspikeIn	125
DSS	1083
dStruct	217
DTA	262
dualKS	194
Dune	231
DupChecker	72
DuplexDiscovereR	159
dupRadar	347
dyebias	408
DynDoc	1944
easier	358
EasyCellType	239
easylift	195
EasyqpcR	126
easyreporting	248
easyRNASeq	461
EBarrays	666
EBcoexpress	336
EBImage	3352
EBSEA	244
EBSeq	717
EBSeqHMM	158
ecolitk	448
EDASeq	1984
edd	94
EDDA	118
edge	384
edgeR	28503
EDIRquery	180
eds	361
eegc	155
EGAD	351
EGSEA	510
eiR	334
eisa	253
eisaR	370
ELBOW	123
ELMER	497
ELViS	161
EMDomics	362
EMMA	3
EmpiricalBrownsMethod	295
ENCODExplorer	96
EnhancedVolcano	7199
enhancerHomologSearch	248
EnMCB	253
ENmix	603
EnrichDO	183
EnrichedHeatmap	1356
EnrichmentBrowser	806
enrichplot	27830
enrichTF	122
enrichViewNet	206
ensembldb	10616
ensemblVEP	225
ENVISIONQuery	94
epialleleR	273
EpiCompare	250
epidecodeR	229
EpiDISH	1102
epigenomix	366
epigraHMM	328
epihet	72
EpiMix	250
epimutacions	269
epiNEM	336
EpipwR	140
epiregulon	189
epiregulon.extra	186
epiRomics	30
epiSeeker	47
epistack	254
epistasisGA	196
EpiTxDb	307
epivizr	492
epivizrChart	328
epivizrData	371
epivizrServer	301
epivizrStandalone	344
erccdashboard	348
erma	287
ERSSA	280
esATAC	336
escape	649
escheR	333
esetVis	332
eudysbiome	368
evaluomeR	284
EventPointer	373
EWCE	414
ExCluster	222
ExiMiR	393
exomeCopy	454
exomePeak	178
exomePeak2	169
exonmap	59
ExperimentHub	9981
ExperimentHubData	709
ExperimentSubset	255
explorase	89
ExploreModelMatrix	422
ExpoRiskR	33
ExpressionAtlas	355
ExpressionView	146
exprExternal	21
externalVector	37
extraChIPs	302
fabia	431
facopy	158
factDesign	401
factR	180
faers	264
FamAgg	320
famat	275
farms	236
fastLiquidAssociation	300
FastqCleaner	329
fastRanges	36
fastreeR	215
fastseg	1330
fbat	59
FCBF	136
fCCAC	351
fCI	284
fcoex	121
fcScan	299
fdrame	315
FEAST	393
FeatSeekR	174
fedup	232
FELLA	410
FEM	113
fenr	196
ffpe	378
fgga	232
FGNet	380
fgsea	28393
FilterFFPE	274
findIPs	169
FindIT2	283
FindMyFriends	116
FinfoMDS	95
FISHalyseR	255
fishpond	796
FitHiC	225
flagme	324
FLAMES	280
flipflop	105
flowAI	741
flowBeads	360
flowBin	322
flowcatchR	386
flowCHIC	309
flowCL	131
flowClean	430
flowClust	1501
flowCore	3560
flowCut	331
flowCyBar	239
flowDensity	554
flowFit	108
flowFlowJo	69
flowFP	539
flowGate	233
flowGraph	207
flowMap	226
flowMatch	372
flowMeans	518
flowMerge	398
flowPeaks	387
flowPhyto	66
flowPloidy	260
flowPlots	259
flowQ	155
flowQB	117
FlowRepositoryR	109
FlowSOM	1436
flowSpecs	304
flowSpy	42
flowStats	1117
flowTime	312
flowTrans	372
flowType	162
flowUtils	263
flowViz	1657
flowVS	391
flowWorkspace	1940
fmcsR	569
fmrs	215
fobitools	242
focalCall	87
FoldGO	159
FourCSeq	172
fourSynergy	46
fRagmentomics	45
fraq	40
FRASER	395
frenchFISH	167
FRGEpistasis	225
frma	504
frmaTools	389
FScanR	56
FunChIP	164
FunciSNP	174
funOmics	139
funtooNorm	297
FuseSOM	236
G4SNVHunter	171
GA4GHclient	287
GA4GHshiny	279
gaga	438
gage	1231
gaggle	237
gaia	146
GAPGOM	73
GAprediction	222
garfield	218
GARS	267
GateFinder	248
gatom	231
gaucho	78
GBScleanR	203
gcapc	395
gcatest	261
gCMAP	150
gCMAPWeb	146
GCPtools	303
gCrisprTools	373
gcrma	1655
GCSConnection	37
GCSFilesystem	30
GCSscore	107
GDCRNATools	453
gDNAx	211
gDR	167
gDRcore	197
gDRimport	204
gDRstyle	189
gDRutils	187
GDSArray	298
gdsfmt	2755
GeDi	207
geecc	92
GEM	252
gemini	219
gemma.R	263
genArise	333
genbankr	295
gene2pathway	32
GeneAccord	83
GeneAnswers	208
geneAttribution	289
GeneBreak	337
geneClassifiers	273
GENE.E	49
GeneExpressionSignature	393
genefilter	14263
genefu	805
GeneGA	213
GeneGeneInteR	186
GeneGroupAnalysis	21
GeneMeta	556
GeneNetworkBuilder	419
GeneOverlap	1144
geneplast	350
geneplotter	4119
GeneR	73
geneRecommender	322
GeneRegionScan	427
GeneRfold	21
geneRxCluster	303
GeneSelectMMD	370
GeneSelector	140
GENESIS	744
GeneSpring	59
GeneStructureTools	327
geNetClassifier	391
GeneticsBase	48
GeneticsDesign	103
GeneticsPed	317
GeneTonic	396
GeneTraffic	52
GeneTS	45
geneXtendeR	350
GENIE3	1852
genoCN	182
GenoGAM	138
genomation	1147
GenomAutomorphism	230
GenomeBase	17
GenomeGraphs	169
GenomeInfoDb	46893
genomeIntervals	454
genomes	298
GenomicAlignments	25334
GenomicCoordinates	36
GenomicDataCommons	1283
GenomicDistributions	306
GenomicFeatures	18749
GenomicFiles	1247
genomicInstability	222
GenomicInteractionNodes	204
GenomicInteractions	725
GenomicOZone	256
GenomicPlot	235
GenomicRanges	53269
GenomicScores	929
GenomicSuperSignature	289
GenomicTuples	343
Genominator	152
genoset	177
genotypeeval	144
GenoView	31
genphen	146
GenProSeq	181
GenRank	49
GenVisR	545
GeoDiff	242
GEOexplorer	150
GEOfastq	188
GEOmetadb	561
geomeTriD	199
GeomxTools	631
GEOquery	13796
GEOsearch	54
GEOsubmission	312
GeoTcgaData	244
gep2pep	238
gesel	3
gespeR	209
getDEE2	222
geva	224
GEWIST	252
geyser	146
gff3Plotter	23
gg4way	203
GGBase	234
ggbio	3053
ggcyto	1436
ggkegg	565
ggmanh	275
ggmsa	847
GGPA	222
ggsc	242
ggseqalign	140
ggspavis	533
GGtools	296
ggtree	32322
ggtreeDendro	191
ggtreeExtra	2163
ggtreeSpace	154
GIGSEA	226
ginmappeR	151
gINTomics	153
girafe	408
GISPA	160
GLAD	561
GladiaTOX	249
Glimma	1177
glmGamPoi	6568
glmSparseNet	343
GlobalAncova	1530
globalSeq	273
globaltest	2330
GloScope	193
glycoTraitR	47
gmapR	354
GmicR	253
gmoviz	306
GMRP	329
GNET2	236
GNOSIS	191
GOaGO	34
goatea	81
goCluster	19
GOexpress	453
GOfan	43
GOfuncR	440
GOFunction	173
GoogleGenomics	84
GOpro	361
goProfiles	505
GOSemSim	24754
goseq	1759
GOSim	246
goSorensen	198
goSTAG	345
GOstats	1784
GOsummaries	189
GOTHiC	527
goTools	371
GPA	201
gpart	124
gpls	548
gprege	135
gpuMagic	181
gQTLBase	131
gQTLstats	141
GrafGen	184
gramm4R	28
GRaNIE	302
granulator	166
graper	246
graph	24071
GraphAlignment	278
GraphAT	412
GraphExperiment	33
graphite	5620
GraphPAC	208
GRENITS	275
GreyListChIP	1422
GRmetrics	334
groHMM	420
GRridge	142
GSABenchmark	37
GSALightning	239
GSAR	394
GSCA	313
gscreend	250
GSEABase	12108
GSEABenchmarkeR	343
GSEAlm	452
GSEAmining	241
gsean	278
GSgalgoR	238
GSReg	317
GSRI	379
GSVA	10725
gtrellis	425
GUIDEseq	463
Guitar	437
gVenn	128
Gviz	3841
GWAS.BAYES	245
gwascat	947
GWASTools	952
gwasurvivr	281
GWENA	281
gypsum	4612
h5mread	12632
h5vc	602
hammers	36
hapFabia	344
Harman	447
HarmonizR	219
Harshlight	303
hca	148
HCABrowser	53
HCAExplorer	27
HCAMatrixBrowser	16
HCsnip	101
HDF5Array	17989
HDTD	230
hdxmsqc	184
heatmaps	518
Heatplus	600
HelloRanges	483
HELP	365
HEM	381
hermes	322
HERON	197
Herper	205
hexbin	105
HGC	210
hiAnnotator	303
HIBAG	390
HicAggR	187
HiCaptuRe	112
HiCBricks	356
HiCcompare	584
HiCDCPlus	278
HiCDOC	261
HiCExperiment	291
HiContacts	304
HiCool	132
HiCParser	142
HiCPotts	117
hicrep	41
hicVennDiagram	185
hierGWAS	301
hierinf	198
HilbertCurve	400
HilbertVis	453
HilbertVisGUI	174
HiLDA	301
hipathia	338
HIPPO	216
hiReadsProcessor	236
HIREewas	269
HiSpaR	36
HistoImagePlot	42
HiTC	529
hmdbQuery	280
HMMcopy	602
HoloFoodR	169
hoodscanR	243
hopach	726
HPAanalyze	396
hpar	724
HPAStainR	44
HPiP	208
HTqPCR	500
HTSanalyzeR	156
HTSeqGenie	99
htSeqTools	162
HTSFilter	607
HuBMAPR	153
HubPub	679
HumanTranscriptomeCompendium	137
hummingbird	234
HVP	129
HybridExpress	177
HybridMTest	334
hypeR	277
hyperdraw	389
hypergraph	449
iASeq	235
iasva	286
iBBiG	310
Ibex	92
ibh	296
iBMQ	228
iCARE	275
Icens	721
icetea	303
iCheck	324
iChip	357
iClusterPlus	560
iCNV	236
iCOBRA	650
ideal	456
IdeoViz	364
idiogram	469
IdMappingAnalysis	123
IdMappingRetrieval	103
idpr	262
idr2d	308
IFAA	188
iFlow	32
igblastr	190
iGC	280
IgGeneUsage	244
igvR	363
igvShiny	247
IHW	1323
illuminaio	3415
ILoReg	262
ImageArray	36
imageFeatureTCGA	33
imageHTS	223
imageTCGA	140
imageTCGAutils	40
IMAS	253
imcRtools	422
Imetagene	101
IMMAN	228
immApex	463
immGLIPH	6
immLynx	28
immReferent	103
ImmuneSpaceR	168
immunoClust	315
immunogenViewer	134
immunotation	238
iModMix	104
IMPCdata	215
ImpulseDE	41
ImpulseDE2	67
impute	13179
INDEED	199
iNETgrate	183
infercnv	2008
infinityFlow	240
Informeasure	186
InPAS	460
INPower	281
inSilicoDb	112
inSilicoMerging	65
INSPEcT	467
INTACT	178
InTAD	301
intansv	382
interacCircos	181
InteractionSet	2004
InteractiveComplexHeatmap	691
interactiveDisplay	520
interactiveDisplayBase	2849
InterCellar	274
IntEREst	348
InterMineR	202
IntOMICS	38
IntramiRExploreR	254
inveRsion	114
IONiseR	485
iontree	77
iPAC	242
iPath	185
ipdDb	264
IPO	363
IPPD	119
IRanges	64398
IRISFGM	73
IrisSpatialFeatures	20
ISAnalytics	249
iscream	112
iSEE	745
iSEEde	221
iSEEfier	182
iSEEhex	248
iSEEhub	239
iSEEid	4
iSEEindex	200
iSEEpathways	208
iSEEtree	176
iSEEu	350
iSeq	267
ISLET	210
islify	151
iSNetwork	29
isobar	462
IsoBayes	183
IsoCorrectoR	259
IsoCorrectoRGUI	205
IsoformSwitchAnalyzeR	702
IsoGeneGUI	216
ISoLDE	218
isomiRs	373
iSPlot	30
ITALICS	377
iterativeBMA	318
iterativeBMAsurv	257
iterClust	103
iteremoval	77
IVAS	358
ivygapSE	258
IWTomics	319
jazzPanda	178
jmosaics	59
joda	134
JunctionSeq	100
jvecfor	34
karyoploteR	1417
katdetectr	239
KBoost	176
KCsmart	395
kebabs	465
KEGGemUP	3
KEGGgraph	6605
KEGGlincs	324
keggorth	30
keggorthology	534
KEGGprofile	138
KEGGREST	43458
KEGGSOAP	72
kimod	60
KinSwingR	261
kissDE	284
kmcut	146
KnowSeq	299
knowYourCG	175
koinar	165
LACE	323
LACHESIS	72
lapmix	230
LBE	442
lcmsPlot	50
ldblock	329
LEA	955
leapR	48
LedPred	230
lefser	767
lemur	213
les	366
levi	225
lfa	413
Lheuristic	130
limma	41278
limmaGUI	418
limpa	237
limpca	172
LimROTS	165
LINC	71
LineagePulse	111
lineagespot	220
LinkHD	253
linkSet	96
Linnorm	478
LinTInd	209
lionessR	291
lipidr	363
LipidTrend	121
LiquidAssociation	318
lisaClust	342
lmdme	334
LMGene	213
lncRna	31
LOBSTAHS	278
loci2path	265
logicFS	383
logitT	185
Logolas	64
lol	85
LOLA	523
looking4clusters	103
LoomExperiment	726
LowMACA	154
LPE	392
LPEadj	175
lpNet	279
lpsymphony	1495
LRBaseDbi	259
LRcell	237
LRDE	24
lumi	1566
lute	85
LVSmiRNA	146
LymphoSeq	323
M3C	775
M3D	131
M3Drop	622
m6Aboost	222
maanova	246
Maaslin2	1192
maaslin3	436
Macarron	158
macat	299
maCorrPlot	334
MACPET	112
MACSQuantifyR	204
MACSr	249
maDB	105
made4	645
MADSEQ	247
maftools	3131
MAGAR	238
MAGeCKFlute	272
magpie	240
magrene	201
MAI	251
maigesPack	299
MAIT	302
makecdfenv	578
makePlatformDesign	29
MANOR	371
manta	167
MantelCorr	306
MAPFX	187
mAPKL	168
maPredictDSC	294
mapscape	235
mariner	212
markeR	109
marr	261
marray	2416
martini	287
maser	378
maSigPro	703
maskBAD	339
MassArray	261
massiR	369
MassSpecWavelet	2416
MAST	2874
mastR	254
matchBox	268
matchprobes	60
MatrixGenerics	49337
MatrixQCvis	249
MatrixRider	339
matter	557
MaxContrastProjection	52
MBAmethyl	220
MBASED	399
MBCB	298
MBECS	234
mbkmeans	863
mbOmic	32
mBPCR	383
MBQN	278
mbQTL	145
MBttest	305
mcaGUI	123
MCbiclust	348
MCRestimate	138
mCSEA	358
mdgsa	139
mdp	296
mdqc	359
MDSvis	34
MDTS	245
MEAL	407
MeasurementError.cor	263
MEAT	310
MEB	274
MEDIPS	522
MEDME	366
megadepth	293
MEIGOR	318
Melissa	195
MeLSI	31
memes	400
MergeMaid	212
Mergeomics	295
MeSHDbi	504
meshes	404
meshr	434
MeSHSim	30
MesKit	343
messina	359
metaArray	185
Metab	159
metabCombiner	261
metabinR	208
MetaboAnnotation	383
MetaboAnnotatoR	31
MetaboCoreUtils	3467
MetaboDynamics	164
metabolomicsWorkbenchR	301
metabom8	36
metabomxtr	302
MetaboSignal	402
metaCCA	237
MetaCyto	278
MetaDICT	104
metagene	294
metagene2	362
metagenomeFeatures	101
metagenomeSeq	2231
metahdep	299
metaMS	399
MetaNeighbor	305
MetaPhOR	223
metapod	7107
metapone	238
MetaProViz	42
metaSeq	331
metaseqR	177
metaseqR2	336
metavizr	130
MetaVolcanoR	114
metaX	27
MetCirc	306
MethCP	90
methimpute	310
methInheritSim	285
methodical	173
MethPed	333
MethReg	298
methrix	402
MethTargetedNGS	262
methVisual	151
methyAnalysis	187
MethylAid	406
methylCC	329
methylclock	428
methylGSA	376
methyLImp2	178
methylInheritance	326
methylKit	1236
MethylMix	390
methylMnM	344
methylPipe	423
methylscaper	248
MethylSeekR	514
methylSig	345
methylumi	1881
methyvim	68
MetID	244
MetMashR	146
MetNet	350
mfa	284
Mfuzz	1683
MGFM	343
MGFR	273
MGnifyR	190
mgsa	365
mia	2163
miaDash	143
miaSim	238
miaTime	146
miaViz	558
MiChip	337
microbiome	2585
microbiomeDASim	206
microbiomeExplorer	245
microbiomeMarker	447
MicrobiomeProfiler	253
MicrobiotaProcess	656
microRNA	905
microSTASIS	91
MICSQTL	190
midasHLA	204
MIGSA	149
miloR	1252
mimager	309
MIMOSA	182
mina	202
MineICA	444
minet	1043
minfi	2913
MinimumDistance	437
MiPP	387
miQC	371
MIRA	329
MiRaGE	479
miRBaseConverter	436
miRcomp	334
mirIntegrator	330
MIRit	207
miRLAB	351
miRmine	180
miRNAmeConverter	256
miRNApath	273
miRNAtap	391
miRSM	320
miRsponge	35
miRspongeR	293
Mirsynergy	90
mirTarRnaSeq	251
missMethyl	1379
missRows	254
mist	141
mistyR	325
mitch	322
mitoClone2	221
mitology	177
mitoODE	90
mixOmics	4638
MLInterfaces	924
mlm4omics	20
MLP	525
MLSeq	415
MMAPPR2	65
MMDiff	102
MMDiff2	374
mmgmos	27
mmnet	65
MmPalateMiRNA	145
MMUPHin	350
mnem	340
moanin	253
mobileRNA	189
MobilityTransformR	56
MODA	264
ModCon	185
Modstrings	351
MOFA	45
MOFA2	1371
MOGAMUN	228
mogsa	500
MoleculeExperiment	205
MOMA	274
monaLisa	410
monocle	3979
Moonlight2R	207
MoonlightR	347
MoPS	90
mosaics	528
mosbi	227
MOSClip	169
mosdef	415
MOSim	307
Motif2Site	225
motifbreakR	505
motifcounter	262
MotifDb	1150
motifmatchr	1924
MotifPeeker	148
motifRG	143
motifStack	1159
motifTestR	205
MotIV	182
MouseFM	224
MPAC	145
MPFE	217
mpra	368
MPRAnalyze	281
MQmetrics	68
mQTL.NMR	94
msa	2531
MSA2dist	250
MsBackendMassbank	263
MsBackendMetaboLights	197
MsBackendMgf	884
MsBackendMsp	476
MsBackendRawFileReader	267
MsBackendSql	251
MsCoreUtils	4567
MsDataHub	315
MSEADbi	16
MsExperiment	1802
MsFeatures	2045
msgbsR	309
MSGFgui	133
MSGFplus	115
msImpute	271
mslp	150
msmsEDA	472
msmsTests	499
MSnbase	4495
MSnID	597
mspms	200
MSPrep	212
msPurity	359
msqrob2	387
MsQuality	214
MSstats	983
MSstatsBig	192
MSstatsBioNet	180
MSstatsConvert	788
MSstatsLiP	302
MSstatsLOBD	182
MSstatsPTM	442
MSstatsQC	276
MSstatsQCgui	192
MSstatsResponse	122
MSstatsSampleSize	95
MSstatsShiny	257
MSstatsTMT	568
MSstatsTMTPTM	24
MSTree	8
MTseeker	35
MuData	245
Mulcom	356
MultiAssayExperiment	8388
MultiBaC	254
multiClust	329
multicrispr	282
MultiDataSet	2128
multiGSEA	345
multiHiCcompare	392
MultiMed	295
multiMiR	909
MultimodalExperiment	211
multiOmicsViz	138
MultipleAlignment	5
MultiRNAflow	198
multiscan	350
multiSight	70
multistateQTL	168
multiWGCNA	212
multtest	13309
mumosa	279
MungeSumstats	825
muscat	1097
muscle	619
musicatk	302
MutationalPatterns	689
mutscan	121
MutSeqR	65
MVCClass	342
mvGST	76
MWASTools	380
mygene	633
myvariant	400
mzID	4053
mzR	4728
NADfinder	362
NanoMethViz	315
NanoStringDiff	308
NanoStringNCTools	669
NanoStringQCPro	170
nanotatoR	109
NanoTube	283
NarrowPeaks	141
NBAMSeq	253
NBSplice	103
ncdfFlow	1806
ncGTW	232
NCIgraph	244
ncRNAtools	246
ndexr	256
neaGUI	67
nearBynding	261
Nebulosa	1569
NeighborNet	94
nem	292
nempi	235
NetActivity	213
netbenchmark	71
netbiov	174
netboost	223
netboxr	67
netDx	96
nethet	323
netOmics	92
NetPathMiner	309
netprioR	232
netReg	50
netresponse	363
NetSAM	330
netSmooth	316
networkBMA	136
netZooR	147
NeuCA	100
NewWave	258
NGScopy	83
ngsReports	313
nipalsMCIA	216
nnNorm	357
nnSVG	318
NOISeq	815
nondetects	343
NoRCE	294
normalize450K	282
NormalyzerDE	456
NormqPCR	426
normr	412
notame	129
notameStats	96
notameViz	116
NPARC	271
npGSEA	386
NTW	269
nucleoSim	308
nucleR	494
nuCpos	241
nudge	124
nullranges	390
NuPoP	339
NxtIRFcore	88
OAtools	39
occugene	265
OCplus	389
octad	250
ODER	62
odseq	269
OGRE	228
OGSA	88
oligo	3422
oligoClasses	2560
OLIN	458
OLINgui	377
omada	145
OmaDB	382
omicade4	473
OmicCircos	421
omicplotR	233
omicRexposome	310
omicsGMF	106
OmicsLonDA	98
OmicsMarkeR	93
OmicsMLRepoR	115
OMICsPCA	340
omicsPrint	339
omicsViewer	249
Omixer	219
OmnipathR	1720
ompBAM	238
omXplore	207
Onassis	87
oncomix	258
oncoscanR	211
OncoScore	299
OncoSimulR	352
oneChannelGUI	165
oneSENSE	91
onlineFDR	196
ontoCAT	92
ontoProc	446
ontoTools	90
openCyto	1302
openPrimeR	357
openPrimeRui	111
OpenStats	187
OperaMate	43
oposSOM	371
oppar	351
oppti	119
optimalFlow	217
OPWeight	283
OrderedList	379
ORFhunteR	245
ORFik	541
OrganismDbi	3420
Organism.dplyr	429
orthogene	858
orthos	203
OSAT	326
Oscope	372
OSTA.data	225
OTUbase	416
OutlierD	175
OUTRIDER	485
OutSplice	206
OVESEG	265
PAA	400
packFinder	275
padma	261
PADOG	523
pageRank	208
PAIRADISE	288
paircompviz	297
pairedGSEA	195
pairkat	224
pairseqsim	15
pamr	90
pandaR	377
panelcn.mops	361
PAnnBuilder	106
PanomiR	233
panoramic	11
panp	490
PANR	330
PanViz	100
PanVizGenerator	97
PAPi	137
parati	35
pareg	62
parglms	335
parody	386
partCNV	165
PAST	308
Path2PPI	304
pathifier	304
pathlinkR	202
pathMED	106
PathNet	303
PathoStat	310
pathprint	56
pathRender	386
pathVar	162
pathview	5442
pathwayPCA	310
PathwaySplice	106
PatientGeneSets	27
paxtoolsr	187
Pbase	129
pbcmc	63
pcaExplorer	572
pcaGoPromoter	111
pcaMethods	6674
PCAN	348
PCAtools	1374
pcot2	234
PCpheno	252
pcxn	101
PDATK	265
pdInfoBuilder	536
pdmclass	189
PeacoQC	515
peakCombiner	102
peakPantheR	257
PECA	354
peco	262
Pedixplorer	201
pengls	179
PepSetTest	154
PepsNMR	319
pepStat	380
pepXMLTab	280
PERFect	101
periodicDNA	321
perturbatr	59
pfamAnalyzeR	397
PFP	56
PGA	197
pgca	192
pgen2gds	2
PGSEA	305
pgUtils	52
pgxRpi	156
phantasus	328
phantasusLite	179
PharmacoGx	681
phemd	143
phenoDist	104
PhenoGeneRanker	157
phenomis	213
phenopath	450
phenoTest	485
PhenStat	246
philr	512
PhIPData	259
phosphonormalizer	230
PhosR	437
phylobar	13
PhyloProfile	331
phyloseq	7416
Pi	180
piano	860
PICB	163
pickgene	307
PICS	351
Pigengene	338
PING	315
PinPath	9
pint	96
pipeComp	302
pipeFrame	303
PIPETS	165
Pirat	156
PIUMA	163
pkgDepTools	240
plaid	54
planet	394
planttfhunter	192
plasmut	156
plateCore	186
plethy	197
plgem	497
plier	470
PlinkMatrix	33
PloGO2	96
plotgardener	440
plotGrouper	237
PLPE	331
plrs	169
PLSDAbatch	181
plw	170
plyinteractions	218
plyranges	1477
plyxp	275
pmm	218
pmp	352
PMScanR	108
PoDCall	200
podkat	465
poem	168
pogos	281
polyester	308
Polyfit	104
PolySTest	155
Polytect	143
POMA	360
posDemux	42
POST	59
PostChicago	3
postNet	46
PoTRA	66
PowerExplorer	46
powerTCR	482
POWSC	239
ppcseq	232
PPInfer	321
ppiStats	282
pqsfinder	487
prada	221
pram	296
prebs	381
preciseTAD	342
PrecisionTrialDrawer	65
PREDA	451
predictionet	115
preprocessCore	17192
primirTSS	306
PrInCE	251
Prize	55
proActiv	355
proBAMr	342
proBatch	186
PROcess	385
procoil	425
ProCoNA	105
proDA	458
proFIA	128
profileplyr	384
profileScoreDist	262
progeny	1122
projectR	313
pRoloc	892
pRolocGUI	402
PROMISE	325
PRONE	182
PROPER	376
PROPS	284
Prostar	313
prot2D	128
proteasy	57
proteinProfiles	228
ProteoDisco	296
ProteomicsAnnotationHubData	106
ProteoMM	302
proteoQC	96
protGear	246
ProtGenerics	12784
PSEA	192
psichomics	370
PSICQUIC	162
PSMatch	3361
psygenet2r	196
ptairMS	291
PTMods	352
PubScore	60
pulsedSilac	60
puma	503
PureCN	558
pvac	345
pvca	575
Pviz	356
pwalign	8592
PWMEnrich	605
pwOmics	285
pwrEWAS	74
qckitfastq	131
qcmetrics	451
QDNAseq	743
QFeatures	3940
qmtools	232
qpcrNorm	356
qpgraph	683
qPLEXanalyzer	306
qrqc	221
QRscore	147
qsea	379
qsmooth	327
QSutils	313
qsvaR	225
QTLExperiment	186
Qtlizer	243
QUALIFIER	150
quantiseqr	1118
quantro	584
quantsmooth	855
QuartPAC	175
QuasR	829
QuaternaryProd	230
QUBIC	318
queeems	27
qusage	666
qvalue	25412
R3CPET	365
r3Cseq	454
R453Plus1Toolbox	392
R4RNA	962
RadioGx	292
raer	242
RaggedExperiment	1256
RAIDS	177
rain	396
rama	217
RamiGO	82
ramr	252
ramwas	382
RandomWalkRestartMH	127
randPack	319
randRotation	193
RankMap	33
RankProd	626
RAREsim	178
RareVariantVis	376
Rariant	188
Rarr	540
rawDiag	168
rawrr	339
RbcBook1	596
Rbec	161
RBedMethyl	45
RBGL	10165
RBioFormats	442
RBioinf	284
rBiopaxParser	786
rBLAST	273
RBM	295
Rbowtie	680
Rbowtie2	509
RbowtieCuda	86
rbsurv	347
Rbwa	168
Rcade	281
RCAS	419
RCASPAR	235
rcellminer	401
rCGH	563
Rchemcpp	146
RchyOptimyx	120
RcisTarget	1646
RCM	309
Rcollectl	94
Rcpi	412
RCSL	219
Rcwl	281
RcwlPipelines	223
RCX	223
RCy3	1213
RCyjs	355
RCytoscape	89
RDAVIDWebService	147
Rdbi	69
RdbiPgSQL	27
rDGIdb	138
Rdisop	991
RDRToolbox	371
ReactomeContentService4R	78
ReactomeGraph4R	54
ReactomeGSA	401
ReactomePA	5440
readat	72
ReadqPCR	422
reb	234
REBET	221
rebook	291
receptLoss	123
reconsi	196
recount	732
recount3	977
recountmethylation	312
recoup	457
RedeR	573
RedisParam	177
REDseq	385
ReducedExperiment	167
RefNet	131
RefPlus	322
Rega	32
RegEnrich	360
regionalpcs	141
RegionalST	199
regioneR	2446
regioneReloaded	210
regionReport	486
regsplice	299
regutools	299
REMP	340
Repitools	489
ReportingTools	1020
reposTools	28
RepViz	225
ReQON	214
ResidualMatrix	4947
RESOLVE	197
Resourcerer	75
restfulSE	194
retrofit	189
ReUseData	163
rexposome	401
rfaRm	256
Rfastp	295
RFGeneRank	23
RFLOMICS	160
rflowcyt	104
rfPred	366
rGADEM	475
RGalaxy	161
rGenomeTracks	195
Rgin	58
RGMQL	81
RgnTX	157
rgoslin	288
RGraph2js	314
Rgraphviz	10527
rGREAT	1047
RGSEA	329
rgsepd	359
rhdf5	26199
rhdf5client	336
rhdf5filters	24543
Rhdf5lib	27250
rhinotypeR	161
Rhisat2	344
Rhtslib	26476
rHVDM	209
RiboCrypt	279
RiboDiPA	263
RiboProfiling	362
ribor	249
riboSeqR	398
ribosomeProfilingQC	320
rifi	188
rifiComparative	177
Rigraphlib	1482
rigvf	138
RImmPort	238
Ringo	437
Rintact	43
RIPAT	94
RIPSeeker	165
Risa	282
RITAN	254
RIVER	304
RJMCMCNucleosomes	313
RLassoCox	190
RLMM	298
RLSeq	71
RMAGEML	29
Rmagpie	332
RMAPPER	55
RMassBank	508
rMAT	134
rmelting	236
RmiR	147
Rmmquant	269
rmspc	228
RNAAgeCalc	315
RNAdecay	198
rnaEditr	244
RNAinteract	204
RNAither	196
RNAmodR	312
RNAmodR.AlkAnilineSeq	266
RNAmodR.ML	301
RNAmodR.RiboMethSeq	248
RNAprobR	114
RNAsense	251
rnaseqcomp	323
RNAseqCovarImpute	179
rnaSeqMap	231
RNASeqPower	386
RNASeqR	79
RnaSeqSampleSize	364
RNAshapeQC	41
RnBeads	691
Rnits	340
roar	394
roastgsa	194
ROC	1654
ROCpAI	224
RolDE	205
Roleswitch	127
Rolexa	100
rols	889
ROntoTools	499
ropls	2179
ROSeq	276
ROTS	514
RPA	420
rprimer	255
RProtoBufLib	3068
RpsiXML	306
rpx	855
Rqc	586
rqt	257
rqubic	320
rRDP	293
Rredland	34
RRHO	331
rrvgo	932
Rsamtools	29371
rsbml	379
rScudo	291
rsemmed	211
RSeqAn	231
rSFFreader	122
RSNPper	45
Rsubread	2384
RSVSim	399
rSWeeP	251
rTANDEM	139
RTCA	314
RTCGA	804
RTCGAToolbox	877
RTN	506
RTNduals	277
RTNsurvival	295
RTools4TB	17
RTopper	409
Rtpca	260
rtracklayer	24092
Rtreemix	273
rTRM	469
rTRMui	314
RUCova	178
runibic	205
Ruuid	69
RUVcorr	292
RUVnormalize	338
RUVSeq	1257
Rvisdiff	197
RVS	260
RWebServices	33
rWikiPathways	614
S4Arrays	49641
S4Vectors	67471
safe	938
SAGElyzer	34
sagenhaft	339
SAGx	221
SAIGEgds	262
samExploreR	54
sampleClassifier	241
SamSPECTRAL	373
sangeranalyseR	407
sangerseqR	834
SanityR	114
SANTA	327
sapFinder	120
saps	27
SARC	101
sarks	238
saseR	175
satuRn	577
savR	98
SBGNview	325
sbgr	9
SBMLR	361
SC3	722
scafari	145
Scale4C	297
ScaledMatrix	15557
scAlign	97
scanMiR	261
scanMiRApp	246
scAnnotatR	244
SCAN.UPC	479
SCANVIS	244
SCArray	267
SCArray.sat	184
SCATE	75
scater	9799
scatterHatch	175
scBatchQC	1
scBFA	260
SCBN	226
scBubbletree	224
scCB2	263
scClassifR	36
scClassify	346
sccomp	318
scConform	34
scDataviz	272
scDblFinder	3661
scDD	488
scDDboost	213
scde	693
scDesign3	230
scDiagnostics	184
scDotPlot	201
scds	908
scECODA	38
SCFA	232
scFastDE	1
scFeatureFilter	273
scFeatures	231
scfind	41
scGPS	296
scGraphVerse	101
schex	339
scHiCcompare	146
scHOT	294
scider	218
scifer	220
ScISI	277
scLANE	113
scLang	40
scMAGeCK	48
scmap	661
scMerge	607
scMET	227
scmeth	320
scMitoMut	161
scMultiSim	207
SCnorm	386
scone	439
Sconify	250
SCOPE	300
scoreInvHap	293
scoup	154
scp	406
scPassport	33
scPCA	320
scPipe	400
scQTLtools	124
scran	7569
scrapper	1613
scReClassify	272
scRecover	273
screenCounter	196
ScreenR	176
scRepertoire	947
scRNAseqApp	243
scruff	330
scry	558
scShapes	171
scsR	116
scTensor	297
scTGIF	316
scTHI	234
scToppR	39
scTreeViz	239
scTypeEval	33
scuttle	11779
scviR	158
SDAMS	246
seahtrue	186
sechm	304
segmenter	246
segmentSeq	469
selectKSigs	202
SELEX	324
SemDist	342
semisup	226
SEMPLR	46
SemSim	42
SEPA	58
SEPIRA	144
seq2pathway	282
seqArchR	161
seqArchRplus	139
SeqArray	1262
seqbias	239
seqCAT	312
seqCNA	154
seqcombo	219
SeqGate	229
SeqGSEA	418
seq.hotSPOT	160
Seqinfo	32764
seqLogo	3866
seqPattern	1146
seqplots	164
seqsetvis	377
SeqSQC	359
Seqtometry	37
seqTools	266
SeqVarTools	797
SEraster	153
sesame	1136
SETA	108
SEtools	268
sevenbridges	336
sevenC	348
sfi	42
SGCP	203
SGSeq	622
SharedObject	323
shinybiocloader	102
shinyDSP	158
shinyepico	262
shiny.gosling	122
shinyMethyl	414
shinyTANDEM	97
ShortRead	7131
SIAMCAT	351
SICtools	301
sigaR	141
SigCheck	344
sigFeature	457
SigFuge	292
siggenes	3873
sights	270
signatureSearch	397
signeR	384
signet	36
signifinder	229
sigPathway	230
SigsPack	270
sigsquared	286
SIM	358
SIMAT	287
SimBindProfiles	184
SimBu	223
SIMD	225
SimFFPE	237
similaRpeak	334
SIMLR	450
simona	991
simPIC	171
simpleaffy	267
simpleSeg	349
simplifyEnrichment	1428
simulatorAPMS	39
simulatorZ	145
sincell	342
singIST	39
single	114
SingleCellAlleleExperiment	191
SingleCellExperiment	21620
SingleCellSignalR	457
singleCellTK	578
SingleMoleculeFootprinting	223
SingleR	5936
singscore	2157
SiPSiC	169
SISPA	125
sitadela	250
Site2Target	139
sitePath	273
sizepower	324
SJava	27
sketchR	187
skewr	326
slalom	216
SLGI	248
slingshot	3271
slinky	88
SLqPCR	287
SMAD	208
SMAP	207
smartid	172
SmartPhos	64
SMITE	359
smoothclust	160
smoppix	161
SMTrackR	44
SNAGEE	295
snapCGH	321
snapcount	252
snifter	646
snm	369
SNPchip	249
SNPediaR	232
SNPhood	428
snpMatrix	41
SNPRelate	2285
snpStats	2707
soGGi	531
sojourner	71
SomatiCA	78
SomaticSignatures	444
SOMNiBUS	220
sosta	207
SpaceMarkers	174
SpacePAC	244
SpaceTrooper	169
spacexr	495
spade	65
Spaniel	288
SpaNorm	237
spARI	110
sparrow	521
SparseArray	56040
sparseDOSSA	120
sparseMatrixStats	19096
sparsenetgls	213
SparseSignatures	324
spaSim	215
SpatialArtifacts	42
SpatialCPie	253
spatialDE	292
SpatialDecon	384
SpatialExperiment	8694
SpatialExperimentIO	227
spatialFDA	192
SpatialFeatureExperiment	391
spatialHeatmap	257
SpatialOmicsOverlay	221
spatialSimGP	145
spatzie	150
speckle	562
specL	349
SpeCond	347
Spectra	3907
SpectralTAD	311
SpectraQL	150
SpectriPy	103
SPEM	314
SPIA	1126
SPIAT	281
SPICEY	109
spicyR	442
SpidermiR	148
SpiecEasi	91
spikeLI	324
spiky	236
spillR	160
spkTools	341
splatter	806
splicegear	178
SpliceImpactR	35
splicelogic	31
spliceR	149
spliceSites	106
SpliceWiz	331
SplicingFactory	208
SplicingGraphs	428
SplineDV	164
splineTCDiffExpr	5
splineTimeR	318
SPLINTER	325
splots	403
SpNeigh	45
SPONGE	326
spoon	160
SpotClean	250
SPOTlight	550
spotSegmentation	106
SpotSweeper	293
spqn	258
SPsimSeq	288
SQLDataFrame	174
SQUADD	141
squallms	150
sRACIPE	300
SRAdb	754
sRAP	94
SRGnet	65
srnadiff	297
sscore	268
sscu	300
sSeq	361
ssize	344
sSNAPPY	249
SSPA	278
ssPATHS	240
ssrch	221
ssviz	319
StabMap	176
STADyUM	115
stageR	526
stam	49
STAN	183
standR	353
staRank	165
StarBioTrek	147
staRgate	64
Starr	194
STATegRa	446
StatescopeR	43
Statial	280
statTarget	447
STdeconvolve	102
stepNorm	339
stepwiseCM	78
stJoincount	198
stPipe	124
strandCheckR	285
Streamer	319
STRINGdb	3526
STROMA4	187
struct	389
Structstrings	319
structToolbox	303
StructuralVariantAnnotation	438
SubCellBarCode	253
subSeq	380
SUITOR	185
SummarizedBenchmark	190
SummarizedExperiment	49732
Summix	172
SuperCellCyto	116
supersigs	275
supraHex	367
surfaltr	265
SurfR	180
survClust	144
survcomp	1962
survtype	245
Sushi	232
sva	10130
svaNUMT	241
SVAPLSseq	88
svaRetro	236
SVM2CRM	97
SVMDO	189
SVP	186
SWATH2stats	293
SwathXtend	212
swfdr	319
SwimR	100
switchBox	293
switchde	295
synapsis	220
synapter	344
synergyfinder	430
SynExtend	291
synlet	253
SynMut	235
syntenet	319
systemPipeR	1782
systemPipeShiny	253
systemPipeTools	237
tadar	194
TADCompare	277
tanggle	269
TAPseq	284
target	289
TargetDecoy	234
TargetScore	310
TargetSearch	315
TarSeqQC	166
TaxSEA	160
TBSignatureProfiler	321
TCC	598
TCGAbiolinks	6110
TCGAbiolinksGUI	89
TCGAutils	1070
TCseq	703
TDARACNE	162
TDbasedUFE	190
TDbasedUFEadv	228
TEKRABber	225
TENET	163
TENxIO	376
tenXplore	312
TEQC	423
terapadog	155
ternarynet	276
terraTCGAdata	193
TFARM	249
TFBSTools	3868
TFEA.ChIP	399
TFHAZ	342
TFutils	365
tidybulk	536
tidyCoverage	203
tidyexposomics	63
tidyFlowCore	147
tidyomics	174
tidyprint	45
tidysbml	147
tidySingleCellExperiment	523
tidySpatialExperiment	240
tidySummarizedExperiment	460
tidytof	68
tigre	420
TileDBArray	249
tilingArray	510
timecourse	526
timeOmics	278
timescape	226
TimeSeriesExperiment	98
TimiRGeN	97
TIN	360
TissueEnrich	423
TitanCNA	283
tkWidgets	2076
tLOH	215
TMixClust	282
TMSig	162
TNBC.CMS	93
TnT	313
TOAST	803
tofsims	102
tomoda	225
tomoseqr	215
TOP	203
ToPASeq	105
topconfects	371
topdownr	337
topGO	2736
toppgene	24
ToxicoGx	305
TPP	455
TPP2D	261
tpSVG	168
tracktables	478
trackViewer	1023
tradeSeq	1367
TrajectoryGeometry	176
TrajectoryUtils	3364
transcriptogramer	351
transcriptR	375
transformGamPoi	253
transite	269
tRanslatome	393
transmogR	177
transomics2cytoscape	224
TransView	368
TraRe	50
traseR	394
Travel	14
traviz	108
TreeAndLeaf	292
treeclimbR	176
treeio	29329
treekoR	280
TreeSummarizedExperiment	2774
TREG	230
trena	192
TReNA	7
Trendy	311
TRESS	261
tricycle	576
TrIdent	136
triform	110
trigger	228
trio	381
triplex	457
tripr	241
tRNA	349
tRNAdbImport	293
tRNAscanImport	308
TRONCO	460
TSAR	160
TSCAN	780
tscR	70
TSENAT	6
tspair	173
TSRchitect	163
TSSi	125
ttgsea	197
TTMap	312
TurboNorm	395
TVTB	390
tweeDEseq	384
twilight	464
twoddpcr	300
txcutr	225
txdbmaker	5897
tximeta	1896
tximport	5003
TxRegInfra	48
TypeInfo	208
UCell	2417
UCSC.utils	31507
Ularcirc	329
UMI4Cats	307
uncoverappLib	256
UNDO	334
unifiedWMWqPCR	284
UniProt.ws	1104
Uniquorn	340
universalmotif	1543
updateObject	219
UPDhmm	171
uSORT	350
VAExprs	208
VanillaICE	596
VarCon	258
variancePartition	2097
VariantAnnotation	9595
VariantExperiment	171
VariantFiltering	460
VariantTools	444
vasp	23
VaSP	301
vbmp	402
VCFArray	318
VDJdive	208
Vega	107
VegaMC	383
velociraptor	363
veloviz	192
VennDetail	423
VERSO	214
vidger	323
viper	1457
virtualArray	28
ViSEAGO	382
VisiumIO	313
visiumStitched	173
vissE	296
VISTA	34
vmrseq	164
Voyager	352
VplotR	292
vsclust	221
vsn	6686
vtpnet	339
vulcan	250
waddR	165
wateRmelon	1113
wavClusteR	369
waveTiling	160
wavFeatExt	29
weaver	313
webbioc	444
weitrix	334
widgetInvoke	22
widgetTools	1995
wiggleplotr	379
wpm	250
wppi	166
Wrench	2164
XAItest	146
XBSeq	185
xCell2	272
XCIR	32
xcms	2655
xcore	239
XDE	488
XeniumIO	147
xenLite	164
Xeva	275
XINA	255
xmapbridge	296
xmapcore	27
XNAString	147
xps	164
XVector	60070
y2hStat	29
yamss	398
YAPSA	407
yaqcaffy	264
yarn	387
ZarrArray	94
zellkonverter	3509
zenith	330
zFPKM	286
zinbwave	1086
zitools	157
zlibbioc	23170
ZygosityPredictor	196