Package	Download_score
a4	355
a4Base	418
a4Classif	334
a4Core	385
a4Preproc	498
a4Reporting	286
ABAEnrichment	131
ABarray	406
abseqR	271
ABSSeq	404
acde	344
ACE	299
aCGH	597
ACME	568
ADaCGH2	400
ADAM	271
ADAMgui	238
ADAPT	104
adaptest	39
adductomicsR	241
ADImpute	276
adSplit	441
adverSCarial	169
Aerith	53
AffiXcan	263
affxparser	2466
affy	9335
affycomp	437
AffyCompatible	190
affyContam	357
affycoretools	709
AffyExpress	170
affyILM	355
affyio	9555
affylmGUI	484
affyPara	199
affypdnn	198
affyPLM	1532
affyQCReport	157
AffyRNADegradation	299
AffyTiling	94
AGDEX	345
aggregateBioVar	287
Agi4x44PreProcess	65
agilp	263
AgiMicroRna	447
AHMassBank	170
AIMS	713
airpart	224
alabaster	186
alabaster.base	5165
alabaster.bumpy	179
alabaster.files	181
alabaster.mae	190
alabaster.matrix	4818
alabaster.ranges	4758
alabaster.sce	1451
alabaster.schemas	4656
alabaster.se	4728
alabaster.sfe	102
alabaster.spatial	201
alabaster.string	194
alabaster.vcf	184
ALDEx2	1761
alevinQC	276
AllelicImbalance	396
AlphaBeta	272
AlphaMissenseR	210
alpine	199
ALPS	36
AlpsNMR	304
alsace	107
altcdfenvs	451
AMARETTO	298
AMOUNTAIN	276
amplican	378
ampliQueso	101
AnalysisPageServer	65
anamiR	54
anansi	92
Anaquin	270
ANCOMBC	2113
AneuFinder	306
ANF	268
anglemania	108
animalcules	393
annaffy	588
AnnBuilder	44
anndataR	678
annmap	335
annoLinker	43
annotate	20744
AnnotationDbi	44157
AnnotationFilter	12572
AnnotationForge	2348
AnnotationFuncs	119
AnnotationHub	14227
AnnotationHubData	810
annotationTools	387
annotatr	927
anota	343
anota2seq	364
antiProfiles	265
AnVIL	858
AnVILAz	156
AnVILBase	644
AnVILBilling	203
AnVILGCP	170
AnVILPublish	197
AnVILVRS	5
AnVILWorkflow	169
APAlyzer	237
apComplex	419
apeglm	6054
APL	221
applera	24
appreci8R	301
aroma.light	2042
ArrayExpress	678
ArrayExpressHTS	129
arrayMagic	105
arrayMvout	409
arrayQCplot	17
arrayQuality	471
arrayQualityMetrics	729
ArrayTools	192
ArrayTV	138
ARRmNormalization	266
artMS	329
ASAFE	210
ASEB	250
ASGSCA	271
ASICS	383
asmn	18
ASpediaFI	78
ASpli	443
AssessORF	301
ASSET	339
ASSIGN	407
assorthead	16911
ASURAT	266
asuri	59
ATACCoGAPS	51
atacInferCnv	18
ATACseqQC	685
ATACseqTFEA	249
atena	242
AtlasRDF	41
atSNP	313
attract	431
AUCell	3777
augere.core	5
augere.de	4
augere.gsea	5
augere.screen	5
augere.solo	5
autonomics	283
Autotuner	43
AWAggregator	95
AWFisher	245
awst	224
BaalChIP	306
BAC	164
bacon	420
BADER	280
BadRegionFinder	293
BAGS	286
ballgown	1888
bambu	537
bamsignals	1499
BANDITS	278
bandle	250
Banksy	545
banocc	212
barbieQ	148
barcodetrackR	153
basecallQC	285
BaseSpaceR	296
Basic4Cseq	347
BASiCS	506
BASiCStan	190
BasicSTARRseq	266
basilisk	4716
basilisk.utils	3470
batchCorr	119
BatChef	16
batchelor	4948
BatchQC	370
BatchSVG	161
Battlefield	25
BayesKnockdown	238
BayesPeak	132
BayesSpace	663
bayNorm	301
baySeq	799
BBCAnalyzer	341
BCRANK	496
bcSeq	229
BDMMAcorrect	96
beachmat	19790
beachmat.hdf5	301
beachmat.tiledb	124
beadarray	932
beadarraySNP	232
BeadDataPackR	765
BeadExplorer	23
BEARscc	135
BEAT	400
BEclear	274
bedbaser	173
beer	226
benchdamic	156
BERT	157
betaHMM	168
betr	117
betterChromVAR	24
bettr	176
BG2	178
bgafun	156
BgeeCall	295
BgeeDB	325
BGmix	174
bgx	289
BHC	180
BicARE	404
BiFET	236
BiGGR	205
bigmelon	353
bigmemoryExtras	89
bigPint	115
bim	22
BindingSiteFinder	265
bioassayR	347
Biobase	60019
biobroom	479
biobtreeR	193
bioCancer	322
BioCartaImage	160
BiocAzul	7
BiocBaseUtils	11998
BiocBook	202
BiocBuildReporter	23
BiocCaseStudies	195
BiocCheck	2288
biocDatasets	11
BiocDockerManager	60
BiocFHIR	201
BiocFileCache	29461
BiocGenerics	70475
Bioc.gff	96
biocGraph	455
BiocHail	126
BiocHubsShiny	196
BiocInstaller	204
BiocIO	21722
BiocMaintainerApp	22
biocmake	2398
BiocNeighbors	13865
BiocOncoTK	163
BioCor	334
BiocParallel	61100
BiocPkgDash	25
BiocPkgTools	469
biocroxytest	147
BiocSet	627
BiocSingular	16149
BiocSklearn	279
BiocStyle	7525
biocthis	727
BiocVersion	72352
biocViews	5309
BiocWorkflowTools	316
biodb	357
biodbChebi	202
biodbExpasy	49
biodbHmdb	137
biodbKegg	79
biodbLipidmaps	56
biodbMirbase	41
biodbNcbi	129
biodbNci	117
biodbUniprot	121
bioDist	505
BioGA	143
biomaRt	24309
BioMedR	19
biomformat	7224
BioMM	92
BioMVCClass	339
biomvRCNS	343
BioNAR	228
BioNERO	405
BioNet	637
BioNetStat	111
BioQC	398
BioSeqClass	130
biosigner	315
Biostrings	54452
biosvd	100
BioTIP	250
biotmle	290
biovizBase	6286
BiRewire	347
birta	121
birte	79
biscuiteer	295
BiSeq	458
BitSeq	261
blacksheepr	256
blase	95
blima	311
BLMA	357
BloodGen3Module	235
bluster	8341
bnbc	296
bnem	239
BOBaFIT	218
borealis	217
BPRMeth	327
BRAIN	411
brainflowprobes	94
brainImageR	18
BrainSABER	69
BrainStars	117
branchpointer	299
breakpointR	296
BreastSubtypeR	154
brendaDb	252
BREW3R.r	175
BRGenomics	191
bridge	189
BridgeDbR	315
broadSeq	129
BrowserViz	343
BrowserVizDemo	21
BSgenome	13973
BSgenomeForge	335
bsseq	1926
BubbleTree	265
BufferedMatrix	281
BufferedMatrixMethods	295
bugsigdbr	685
BulkSignalR	260
BUMHMM	283
bumphunter	3033
BumpyMatrix	812
BUS	334
BUScorrect	271
BUSpaRse	453
BUSseq	274
CaDrA	168
CAEN	208
CAFE	421
CAGEfightR	450
cageminer	243
CAGEr	562
CALIB	156
CalibraCurve	91
calm	184
CAMERA	889
CAMTHC	42
CaMutQC	171
canceR	323
cancerclass	599
CancerInSilico	105
CancerMutationAnalysis	139
CancerSubtypes	191
CAnD	121
caOmicsV	176
cardelino	249
Cardinal	615
CardinalIO	311
CARDspa	204
carnation	30
CARNIVAL	370
casper	393
CATALYST	761
Category	1715
categoryCompare	420
CatsCradle	166
CausalR	287
cbaf	275
CBEA	79
cBioPortalData	745
CBN2Path	83
CBNplot	250
cbpManager	238
CCAFE	168
ccfindR	253
ccImpute	217
ccmap	202
CCPlotR	218
CCPROMISE	263
ccrepe	346
CDI	197
celaref	309
celda	1259
CellaRepertorium	98
CellBarcode	262
cellbaseR	325
CellBench	356
cellGrowth	118
cellHTS	181
cellHTS2	348
CelliD	399
cellity	315
CellMapper	268
CellMentor	46
cellmig	111
cellmigRation	212
CellMixS	414
CellNOptR	452
cellscape	204
CellScore	148
CellTrails	311
cellTree	205
cellxgenedp	236
CEMiTool	390
censcyt	218
Cepo	363
ceRNAnetsim	204
CeTF	314
CexoR	387
CFAssay	217
cfdnakit	231
cfDNAPro	291
cfTools	161
CGEN	275
CGHbase	739
CGHcall	712
cghMCR	410
CGHnormaliter	335
CGHregions	349
ChAMP	1016
CHARGE	34
charm	156
ChemmineOB	589
ChemmineR	1219
CHETAH	292
chevreulPlot	146
chevreulProcess	158
chevreulShiny	140
ChIC	74
Chicago	339
chihaya	254
chimera	175
chimeraviz	392
ChIPanalyser	327
ChIPComp	307
chipenrich	415
ChIPexoQual	323
ChIPpeakAnno	1364
ChIPQC	574
ChIPseeker	2981
chipseq	957
ChIPseqR	433
ChIPSeqSpike	57
ChIPsim	391
ChIPXpress	301
chopsticks	307
chroGPS	156
Chromatograms	110
chromDraw	266
ChromHeatMap	360
ChromoViz	52
chromPlot	356
ChromSCape	264
chromstaR	281
chromswitch	120
chromVAR	1559
CHRONOS	292
cicero	570
cigarillo	9594
CIMICE	209
CINdex	240
circRNAprofiler	343
CircSeqAlignTk	194
cisPath	162
CiteFuse	280
ClassifyR	567
cleanUpdTSeq	424
CleanUpRNAseq	187
cleaver	520
clevRvis	175
clippda	332
clipper	488
cliProfiler	211
cliqueMS	277
Clomial	259
Clonality	161
ClonalSim	15
clonotypeR	111
clst	311
clstutils	301
CluMSID	265
ClustAll	169
clustComp	264
clusterExperiment	609
ClusterFoldSimilarity	174
ClusterGVis	67
ClusterJudge	249
clusterProfiler	26621
clusterSeq	266
ClusterSignificance	256
clusterStab	346
clustifyr	404
ClustIRR	175
clustSIGNAL	157
CMA	430
cmapR	716
CNAnorm	300
CNEr	2193
cn.farms	381
cn.mops	582
CNORdt	272
CNORfeeder	347
CNORfuzzy	332
CNORode	317
CNPBayes	98
CNTools	387
CNVfilteR	254
CNVgears	73
cnvGSA	293
CNViz	179
CNVMetrics	220
CNVPanelizer	329
CNVRanger	312
CNVrd2	349
CNVtools	88
cobindR	127
CoCiteStats	297
COCOA	343
codelink	501
CODEX	423
coexnet	96
CoGAPS	483
cogena	385
cogeqc	249
Cogito	222
coGPS	293
COHCAP	162
cola	502
comapr	181
combi	234
coMET	251
coMethDMR	226
compartmap	139
COMPASS	382
compcodeR	475
CompensAID	44
compEpiTools	353
CompGO	120
ComplexHeatmap	21920
CompoundDb	592
ComPrAn	182
compSPOT	154
conclus	54
concordexR	203
condcomp	12
condiments	313
CONFESS	338
consensus	233
ConsensusClusterPlus	3394
consensusDE	258
consensusOV	305
consensusSeekeR	322
consICA	224
CONSTANd	214
contiBAIT	226
conumee	448
convert	454
copa	356
COPDSexualDimorphism	19
copynumber	331
CopyNumber450k	57
CopyNumberPlots	282
CopywriteR	200
Coralysis	155
coRdon	472
CoRegFlux	32
CoRegNet	189
CoreGx	614
Cormotif	327
CorMut	83
coRNAi	97
corral	272
CORREP	164
coseq	390
CoSIA	186
cosmiq	312
cosmo	89
cosmoGUI	41
cosmosR	304
COSNet	264
COTAN	247
CountClust	102
countsimQC	467
covEB	261
CoverageView	353
covRNA	272
CPSM	155
cpvSNP	336
cqn	563
CrcBiomeScreen	23
CRImage	421
CRISPRball	141
crisprBase	301
crisprBowtie	286
crisprBwa	176
crisprDesign	305
crisprScore	320
CRISPRseek	447
crisprseekplus	122
crisprShiny	144
CrispRVariants	418
crisprVerse	210
crisprViz	299
crlmm	638
CrossICC	21
crossmeta	216
crumblr	152
crupR	154
CSAR	395
csaw	825
csdR	182
CSOA	95
CSSP	112
CSSQ	257
ctc	528
CTdata	199
CTDquerier	415
CTexploreR	179
ctgGEM	46
cTRAP	297
ctsGE	282
CTSV	186
cummeRbund	485
CuratedAtlasQueryR	201
customCMPdb	234
customProDB	346
CVE	54
cyanoFilter	220
cycle	352
cydar	366
cypress	186
CytoDx	237
cytofast	42
cytofkit	79
CyTOFpower	179
cytofQC	159
CytoGLMM	216
cytoKernel	213
cytolib	3085
cytomapper	571
CytoMDS	173
cytoMEM	227
CytoML	899
CytoPipeline	217
CytoPipelineGUI	167
CytoTree	62
cytoviewer	233
dada2	3301
dagLogo	430
daMA	359
DAMEfinder	315
damidBind	54
DaMiRseq	369
Damsel	178
dandelionR	141
DAPAR	401
DaparToolshed	4
dar	182
DART	346
DASC	4
DASiR	64
dasper	72
DAVIDQuery	60
DBChIP	146
dcanr	400
DCATS	186
dce	159
dcGSA	225
DChIPRep	132
ddCt	401
ddgraph	88
ddPCRclust	269
dearseq	319
debCAM	195
debrowser	394
decemedip	49
DECIPHER	3787
deco	107
DEComplexDisease	106
decompTumor2Sig	263
DeconRNASeq	446
decontam	2158
decontX	576
DeconvoBuddies	166
deconvR	256
decoupleR	2489
DEDS	194
DeeDeeExperiment	113
DeepBlueR	153
DeepPINCS	210
deepSNV	529
DeepTarget	164
DEFormats	534
DegCre	195
DegNorm	265
DEGraph	269
DEGreport	834
DEGseq	502
DelayedArray	52287
DelayedDataFrame	285
DelayedMatrixStats	17909
DelayedRandomArray	212
DelayedTensor	215
DELocal	173
deltaCaptureC	210
deltaGseg	263
DeMAND	205
DeMixT	299
demuxmix	249
demuxSNP	207
DenoIST	38
densvis	794
DEP	978
DepecheR	265
DepInfeR	197
DeProViR	24
DEqMS	548
derfinder	896
derfinderHelper	756
derfinderPlot	435
DEScan2	327
DESeq	490
DESeq2	29888
DEsingle	415
DESpace	257
destiny	1310
DEsubs	342
DEWSeq	296
DExMA	248
DEXSeq	2113
dexus	127
DFP	343
DFplyr	160
DIAlignR	100
DiffBind	1629
diffcoexp	273
diffcyt	613
DifferentialRegulation	210
diffGeneAnalysis	262
diffHic	462
DiffLogo	291
diffloop	236
diffuStats	284
diffUTR	250
diggit	270
Dino	239
dinoR	177
Director	104
dir.expiry	7758
DirichletMultinomial	5231
discordant	302
DiscoRhythm	299
distinct	333
dittoSeq	1484
divergence	213
dks	239
DMCFB	253
DMCHMM	267
dmGsea	145
DMRcaller	401
DMRcate	1318
DMRforPairs	167
DMRScan	327
dmrseq	504
DNABarcodeCompatibility	188
DNABarcodes	338
DNAcopy	4484
DNAcycP2	153
dnaEPICO	4
DNAfusion	223
DNaseR	29
DNAshapeR	444
DNEA	129
domainsignatures	91
dominatR	56
DominoEffect	252
dominoSignal	179
doppelgangR	329
DOQTL	126
Doscheda	287
DOSE	26031
doseR	292
DOtools	77
DOTSeq	48
doubletrouble	256
dpeak	77
drawProteins	332
dreamlet	358
DRIMSeq	647
DriverNet	267
DropletUtils	3041
drugfindR	44
drugTargetInteractions	225
DrugVsDisease	327
dSimer	74
DspikeIn	105
DSS	1069
dStruct	205
DTA	257
dualKS	179
Dune	220
DupChecker	65
DuplexDiscovereR	155
dupRadar	342
dyebias	390
DynDoc	1915
easier	346
EasyCellType	235
easylift	184
EasyqpcR	119
easyreporting	239
easyRNASeq	435
EBarrays	619
EBcoexpress	322
EBImage	3371
EBSEA	236
EBSeq	705
EBSeqHMM	151
ecolitk	422
EDASeq	1993
edd	86
EDDA	111
edge	363
edgeR	28362
EDIRquery	179
eds	359
eegc	145
EGAD	344
EGSEA	483
eiR	317
eisa	238
eisaR	358
ELBOW	117
ELMER	489
ELViS	156
EMDomics	348
EmpiricalBrownsMethod	289
ENCODExplorer	91
EnhancedVolcano	7265
enhancerHomologSearch	235
EnMCB	236
ENmix	582
EnrichDO	177
EnrichedHeatmap	1320
EnrichmentBrowser	787
enrichplot	27517
enrichTF	112
enrichViewNet	197
ensembldb	10647
ensemblVEP	214
ENVISIONQuery	82
epialleleR	262
EpiCompare	237
epidecodeR	222
EpiDISH	1080
epigenomix	342
epigraHMM	311
epihet	65
EpiMix	240
epimutacions	257
epiNEM	324
EpipwR	145
epiregulon	181
epiregulon.extra	181
epiRomics	18
epiSeeker	31
epistack	246
epistasisGA	191
EpiTxDb	300
epivizr	465
epivizrChart	309
epivizrData	346
epivizrServer	287
epivizrStandalone	327
erccdashboard	329
erma	276
ERSSA	266
esATAC	297
escape	635
escheR	307
esetVis	319
eudysbiome	348
evaluomeR	272
EventPointer	354
EWCE	392
ExCluster	218
ExiMiR	376
exomeCopy	435
exomePeak	171
exomePeak2	162
exonmap	55
ExperimentHub	9896
ExperimentHubData	665
ExperimentSubset	244
explorase	82
ExploreModelMatrix	415
ExpoRiskR	21
ExpressionAtlas	337
ExpressionView	140
exprExternal	20
externalVector	34
extraChIPs	287
fabia	419
facopy	148
factDesign	376
factR	173
faers	256
FamAgg	309
famat	263
farms	220
fastLiquidAssociation	282
FastqCleaner	312
fastRanges	21
fastreeR	211
fastseg	1300
fbat	55
FCBF	128
fCCAC	334
fCI	273
fcoex	116
fcScan	297
fdrame	296
FEAST	383
FeatSeekR	171
fedup	222
FELLA	397
FEM	106
fenr	189
ffpe	358
fgga	220
FGNet	362
fgsea	28748
FilterFFPE	262
findIPs	165
FindIT2	269
FindMyFriends	106
FinfoMDS	84
FISHalyseR	240
fishpond	756
FitHiC	222
flagme	303
FLAMES	265
flipflop	93
flowAI	726
flowBeads	342
flowBin	300
flowcatchR	363
flowCHIC	293
flowCL	117
flowClean	419
flowClust	1440
flowCore	3481
flowCut	318
flowCyBar	225
flowDensity	539
flowFit	100
flowFlowJo	66
flowFP	510
flowGate	225
flowGraph	202
flowMap	211
flowMatch	345
flowMeans	494
flowMerge	375
flowPeaks	379
flowPhyto	64
flowPloidy	250
flowPlots	247
flowQ	145
flowQB	107
FlowRepositoryR	101
FlowSOM	1410
flowSpecs	286
flowSpy	40
flowStats	1065
flowTime	298
flowTrans	352
flowType	156
flowUtils	248
flowViz	1599
flowVS	375
flowWorkspace	1873
fmcsR	549
fmrs	211
fobitools	232
focalCall	80
FoldGO	155
FourCSeq	162
fourSynergy	30
fRagmentomics	33
fraq	27
FRASER	376
frenchFISH	163
FRGEpistasis	213
frma	475
frmaTools	370
FScanR	51
FunChIP	157
FunciSNP	161
funOmics	144
funtooNorm	284
FuseSOM	228
G4SNVHunter	167
GA4GHclient	270
GA4GHshiny	260
gaga	411
gage	1212
gaggle	217
gaia	132
GAPGOM	67
GAprediction	211
garfield	207
GARS	253
GateFinder	234
gatom	226
gaucho	70
GBScleanR	199
gcapc	368
gcatest	249
gCMAP	142
gCMAPWeb	140
GCPtools	261
gCrisprTools	357
gcrma	1621
GCSConnection	33
GCSFilesystem	28
GCSscore	102
GDCRNATools	433
gDNAx	203
gDR	160
gDRcore	189
gDRimport	199
gDRstyle	183
gDRutils	180
GDSArray	284
gdsfmt	2761
GeDi	197
geecc	86
GEM	240
gemini	209
gemma.R	257
genArise	320
genbankr	282
gene2pathway	28
GeneAccord	76
GeneAnswers	200
geneAttribution	290
GeneBreak	316
geneClassifiers	262
GENE.E	46
GeneExpressionSignature	375
genefilter	14219
genefu	776
GeneGA	209
GeneGeneInteR	174
GeneGroupAnalysis	20
GeneMeta	528
GeneNetworkBuilder	391
GeneOverlap	1117
geneplast	339
geneplotter	4139
GeneR	69
geneRecommender	306
GeneRegionScan	398
GeneRfold	20
geneRxCluster	290
GeneSelectMMD	352
GeneSelector	129
GENESIS	725
GeneSpring	56
GeneStructureTools	312
geNetClassifier	374
GeneticsBase	48
GeneticsDesign	90
GeneticsPed	305
GeneTonic	373
GeneTraffic	46
GeneTS	42
geneXtendeR	325
GENIE3	1834
genoCN	166
GenoGAM	126
genomation	1135
GenomAutomorphism	220
GenomeBase	15
GenomeGraphs	157
GenomeInfoDb	49119
genomeIntervals	430
genomes	290
GenomicAlignments	25442
GenomicCoordinates	23
GenomicDataCommons	1260
GenomicDistributions	295
GenomicFeatures	18924
GenomicFiles	1238
genomicInstability	219
GenomicInteractionNodes	198
GenomicInteractions	699
GenomicOZone	241
GenomicPlot	230
GenomicRanges	53262
GenomicScores	933
GenomicSuperSignature	274
GenomicTuples	323
Genominator	145
genoset	165
genotypeeval	129
GenoView	29
genphen	138
GenProSeq	178
GenRank	45
GenVisR	520
GeoDiff	227
GEOexplorer	150
GEOfastq	192
GEOmetadb	541
geomeTriD	191
GeomxTools	617
GEOquery	13543
GEOsearch	48
GEOsubmission	298
GeoTcgaData	239
gep2pep	231
gespeR	194
getDEE2	217
geva	218
GEWIST	237
geyser	144
gff3Plotter	21
gg4way	194
GGBase	221
ggbio	3045
ggcyto	1395
ggkegg	564
ggmanh	264
ggmsa	836
GGPA	216
ggsc	235
ggseqalign	133
ggspavis	514
GGtools	286
ggtree	32027
ggtreeDendro	187
ggtreeExtra	2125
ggtreeSpace	152
GIGSEA	228
ginmappeR	142
gINTomics	146
girafe	388
GISPA	152
GLAD	547
GladiaTOX	239
Glimma	1178
glmGamPoi	6620
glmSparseNet	331
GlobalAncova	1497
globalSeq	256
globaltest	2296
GloScope	187
glycoTraitR	35
gmapR	343
GmicR	242
gmoviz	288
GMRP	313
GNET2	231
GNOSIS	185
GOaGO	18
goatea	62
goCluster	18
GOexpress	433
GOfan	31
GOfuncR	430
GOFunction	161
GoogleGenomics	75
GOpro	348
goProfiles	485
GOSemSim	24582
goseq	1770
GOSim	226
goSorensen	194
goSTAG	338
GOstats	1748
GOsummaries	174
GOTHiC	502
goTools	358
GPA	194
gpart	119
gpls	512
gprege	122
gpuMagic	176
gQTLBase	119
gQTLstats	134
GrafGen	172
gramm4R	26
GRaNIE	276
granulator	176
graper	230
graph	23923
GraphAlignment	261
GraphAT	397
GraphExperiment	18
graphite	5502
GraphPAC	193
GRENITS	261
GreyListChIP	1415
GRmetrics	322
groHMM	393
GRridge	133
GSABenchmark	25
GSALightning	226
GSAR	376
GSCA	299
gscreend	239
GSEABase	11872
GSEABenchmarkeR	323
GSEAlm	431
GSEAmining	241
gsean	271
GSgalgoR	233
GSReg	296
GSRI	352
GSVA	10471
gtrellis	410
GUIDEseq	430
Guitar	425
gVenn	112
Gviz	3814
GWAS.BAYES	238
gwascat	899
GWASTools	940
gwasurvivr	265
GWENA	273
gypsum	4580
h5mread	12376
h5vc	542
hammers	23
hapFabia	328
Harman	436
HarmonizR	215
Harshlight	291
hca	147
HCABrowser	49
HCAExplorer	23
HCAMatrixBrowser	14
HCsnip	97
HDF5Array	17800
HDTD	218
hdxmsqc	173
heatmaps	501
Heatplus	578
HelloRanges	464
HELP	348
HEM	358
hermes	313
HERON	194
Herper	209
hexbin	100
HGC	200
hiAnnotator	297
HIBAG	383
HicAggR	179
HiCaptuRe	99
HiCBricks	349
HiCcompare	571
HiCDCPlus	264
HiCDOC	247
HiCExperiment	283
HiContacts	290
HiCool	132
HiCParser	136
HiCPotts	104
hicrep	36
hicVennDiagram	185
hierGWAS	284
hierinf	189
HilbertCurve	380
HilbertVis	433
HilbertVisGUI	165
HiLDA	286
hipathia	314
HIPPO	213
hiReadsProcessor	234
HIREewas	261
HiSpaR	25
HistoImagePlot	23
HiTC	501
hmdbQuery	266
HMMcopy	593
HoloFoodR	161
hoodscanR	234
hopach	720
HPAanalyze	388
hpar	687
HPAStainR	41
HPiP	201
HTqPCR	476
HTSanalyzeR	149
HTSeqGenie	90
htSeqTools	150
HTSFilter	577
HuBMAPR	148
HubPub	644
HumanTranscriptomeCompendium	125
hummingbird	219
HVP	120
HybridExpress	172
HybridMTest	320
hypeR	264
hyperdraw	373
hypergraph	430
iASeq	224
iasva	276
iBBiG	301
Ibex	80
ibh	285
iBMQ	217
iCARE	262
Icens	689
icetea	283
iCheck	298
iChip	343
iClusterPlus	560
iCNV	225
iCOBRA	621
ideal	420
IdeoViz	339
idiogram	439
IdMappingAnalysis	113
IdMappingRetrieval	94
idpr	250
idr2d	296
IFAA	185
iFlow	32
igblastr	174
iGC	267
IgGeneUsage	236
igvR	336
igvShiny	238
IHW	1297
illuminaio	3349
ILoReg	257
ImageArray	23
imageFeatureTCGA	18
imageHTS	208
imageTCGA	136
imageTCGAutils	23
IMAS	230
imcRtools	400
Imetagene	95
IMMAN	224
immApex	438
immLynx	16
immReferent	77
ImmuneSpaceR	159
immunoClust	292
immunogenViewer	125
immunotation	236
iModMix	91
IMPCdata	206
ImpulseDE	35
ImpulseDE2	60
impute	13120
INDEED	192
iNETgrate	172
infercnv	1999
infinityFlow	230
Informeasure	179
InPAS	427
INPower	279
inSilicoDb	105
inSilicoMerging	59
INSPEcT	433
INTACT	174
InTAD	282
intansv	357
interacCircos	179
InteractionSet	2016
InteractiveComplexHeatmap	689
interactiveDisplay	499
interactiveDisplayBase	2919
InterCellar	269
IntEREst	327
InterMineR	186
IntOMICS	36
IntramiRExploreR	249
inveRsion	101
IONiseR	469
iontree	67
iPAC	227
iPath	179
ipdDb	246
IPO	352
IPPD	110
IRanges	64446
IRISFGM	67
IrisSpatialFeatures	16
ISAnalytics	236
iscream	97
iSEE	731
iSEEde	215
iSEEfier	177
iSEEhex	236
iSEEhub	228
iSEEindex	192
iSEEpathways	202
iSEEtree	169
iSEEu	340
iSeq	258
ISLET	204
islify	147
iSNetwork	27
isobar	432
IsoBayes	183
IsoCorrectoR	254
IsoCorrectoRGUI	193
IsoformSwitchAnalyzeR	680
IsoGeneGUI	205
ISoLDE	211
isomiRs	346
iSPlot	28
ITALICS	356
iterativeBMA	302
iterativeBMAsurv	238
iterClust	94
iteremoval	69
IVAS	332
ivygapSE	254
IWTomics	311
jazzPanda	170
jmosaics	58
joda	122
JunctionSeq	93
jvecfor	22
karyoploteR	1385
katdetectr	226
KBoost	170
KCsmart	376
kebabs	439
KEGGgraph	6662
KEGGlincs	305
keggorth	27
keggorthology	490
KEGGprofile	127
KEGGREST	43542
KEGGSOAP	68
kimod	52
KinSwingR	249
kissDE	267
kmcut	144
KnowSeq	289
knowYourCG	173
koinar	163
LACE	303
LACHESIS	59
lapmix	209
LBE	428
lcmsPlot	39
ldblock	316
LEA	948
leapR	35
LedPred	222
lefser	740
lemur	213
les	344
levi	215
lfa	407
Lheuristic	128
limma	41154
limmaGUI	387
limpa	225
limpca	166
LimROTS	162
LINC	62
LineagePulse	100
lineagespot	210
LinkHD	244
linkSet	90
Linnorm	460
LinTInd	209
lionessR	282
lipidr	351
LipidTrend	114
LiquidAssociation	299
lisaClust	338
lmdme	310
LMGene	198
lncRna	18
LOBSTAHS	263
loci2path	248
logicFS	362
logitT	170
Logolas	60
lol	76
LOLA	513
looking4clusters	91
LoomExperiment	731
LowMACA	141
LPE	370
LPEadj	164
lpNet	264
lpsymphony	1460
LRBaseDbi	243
LRcell	228
LRDE	17
lumi	1549
lute	92
LVSmiRNA	131
LymphoSeq	308
M3C	761
M3D	122
M3Drop	624
m6Aboost	210
maanova	233
Maaslin2	1183
maaslin3	416
Macarron	152
macat	273
maCorrPlot	318
MACPET	103
MACSQuantifyR	200
MACSr	243
maDB	100
made4	618
MADSEQ	228
maftools	3126
MAGAR	230
MAGeCKFlute	278
magpie	235
magrene	195
MAI	239
maigesPack	281
MAIT	294
makecdfenv	541
makePlatformDesign	27
MANOR	355
manta	158
MantelCorr	284
MAPFX	178
mAPKL	154
maPredictDSC	282
mapscape	228
mariner	202
markeR	94
marr	252
marray	2386
martini	277
maser	354
maSigPro	690
maskBAD	327
MassArray	248
massiR	354
MassSpecWavelet	2361
MAST	2816
mastR	242
matchBox	254
matchprobes	57
MatrixGenerics	49381
MatrixQCvis	240
MatrixRider	319
matter	535
MaxContrastProjection	49
MBAmethyl	212
MBASED	380
MBCB	278
MBECS	221
mbkmeans	813
mbOmic	29
mBPCR	360
MBQN	267
mbQTL	142
MBttest	296
mcaGUI	115
MCbiclust	329
MCRestimate	127
mCSEA	338
mdgsa	128
mdp	292
mdqc	349
MDSvis	22
MDTS	236
MEAL	383
MeasurementError.cor	252
MEAT	295
MEB	264
MEDIPS	489
MEDME	347
megadepth	282
MEIGOR	305
Melissa	184
MeLSI	20
memes	395
MergeMaid	201
Mergeomics	282
MeSHDbi	477
meshes	396
meshr	408
MeSHSim	29
MesKit	327
messina	335
metaArray	169
Metab	149
metabCombiner	259
metabinR	197
MetaboAnnotation	370
MetaboAnnotatoR	21
MetaboCoreUtils	3405
MetaboDynamics	156
metabolomicsWorkbenchR	290
metabom8	21
metabomxtr	283
MetaboSignal	381
metaCCA	226
MetaCyto	264
MetaDICT	92
metagene	267
metagene2	341
metagenomeFeatures	92
metagenomeSeq	2228
metahdep	283
metaMS	377
MetaNeighbor	303
MetaPhOR	210
metapod	6925
metapone	225
MetaProViz	31
metaSeq	317
metaseqR	165
metaseqR2	318
metavizr	121
MetaVolcanoR	109
metaX	26
MetCirc	297
MethCP	86
methimpute	294
methInheritSim	268
methodical	167
MethPed	308
MethReg	287
methrix	388
MethTargetedNGS	247
methVisual	140
methyAnalysis	173
MethylAid	377
methylCC	309
methylclock	422
methylGSA	360
methyLImp2	176
methylInheritance	310
methylKit	1213
MethylMix	374
methylMnM	332
methylPipe	399
methylscaper	235
MethylSeekR	494
methylSig	331
methylumi	1863
methyvim	57
MetID	236
MetMashR	138
MetNet	331
mfa	279
Mfuzz	1650
MGFM	318
MGFR	263
MGnifyR	187
mgsa	344
mia	2032
miaDash	142
miaSim	233
miaTime	127
miaViz	544
MiChip	318
microbiome	2586
microbiomeDASim	197
microbiomeExplorer	231
microbiomeMarker	449
MicrobiomeProfiler	247
MicrobiotaProcess	654
microRNA	853
microSTASIS	101
MICSQTL	188
midasHLA	203
MIGSA	141
miloR	1180
mimager	289
MIMOSA	169
mina	192
MineICA	430
minet	1019
minfi	2850
MinimumDistance	405
MiPP	360
miQC	363
MIRA	318
MiRaGE	450
miRBaseConverter	433
miRcomp	315
mirIntegrator	311
MIRit	199
miRLAB	332
miRmine	173
miRNAmeConverter	241
miRNApath	261
miRNAtap	370
miRSM	299
miRsponge	29
miRspongeR	277
Mirsynergy	82
mirTarRnaSeq	243
missMethyl	1374
missRows	244
mist	134
mistyR	321
mitch	317
mitoClone2	216
mitology	174
mitoODE	81
mixOmics	4587
MLInterfaces	871
mlm4omics	17
MLP	503
MLSeq	396
MMAPPR2	59
MMDiff	100
MMDiff2	353
mmgmos	24
mmnet	64
MmPalateMiRNA	137
MMUPHin	341
mnem	325
moanin	236
mobileRNA	182
MobilityTransformR	50
MODA	250
ModCon	181
Modstrings	338
MOFA	42
MOFA2	1341
MOGAMUN	222
mogsa	478
MoleculeExperiment	197
MOMA	261
monaLisa	385
monocle	3990
Moonlight2R	197
MoonlightR	323
MoPS	83
mosaics	498
mosbi	227
MOSClip	166
mosdef	407
MOSim	288
Motif2Site	218
motifbreakR	491
motifcounter	254
MotifDb	1131
motifmatchr	1890
MotifPeeker	146
motifRG	136
motifStack	1161
motifTestR	199
MotIV	171
MouseFM	207
MPAC	143
MPFE	207
mpra	344
MPRAnalyze	265
MQmetrics	63
mQTL.NMR	90
msa	2571
MSA2dist	240
MsBackendMassbank	246
MsBackendMetaboLights	188
MsBackendMgf	831
MsBackendMsp	443
MsBackendRawFileReader	259
MsBackendSql	240
MsCoreUtils	4516
MsDataHub	302
MSEADbi	14
MsExperiment	1750
MsFeatures	2001
msgbsR	295
MSGFgui	131
MSGFplus	106
msImpute	262
mslp	144
msmsEDA	457
msmsTests	485
MSnbase	4411
MSnID	572
mspms	192
MSPrep	202
msPurity	352
msqrob2	362
MsQuality	207
MSstats	967
MSstatsBig	190
MSstatsBioNet	175
MSstatsConvert	786
MSstatsLiP	293
MSstatsLOBD	179
MSstatsPTM	428
MSstatsQC	272
MSstatsQCgui	187
MSstatsResponse	105
MSstatsSampleSize	89
MSstatsShiny	250
MSstatsTMT	550
MSstatsTMTPTM	22
MSTree	2
MTseeker	32
MuData	241
Mulcom	339
MultiAssayExperiment	8213
MultiBaC	249
multiClust	316
multicrispr	263
MultiDataSet	2082
multiGSEA	334
multiHiCcompare	375
MultiMed	279
multiMiR	868
MultimodalExperiment	206
multiOmicsViz	135
MultiRNAflow	195
multiscan	322
multiSight	64
multistateQTL	160
multiWGCNA	207
multtest	13302
mumosa	264
MungeSumstats	829
muscat	1042
muscle	616
musicatk	283
MutationalPatterns	652
mutscan	104
MutSeqR	50
MVCClass	333
mvGST	69
MWASTools	357
mygene	618
myvariant	379
mzID	4025
mzR	4638
NADfinder	331
NanoMethViz	299
NanoStringDiff	295
NanoStringNCTools	643
NanoStringQCPro	153
nanotatoR	98
NanoTube	276
NarrowPeaks	126
NBAMSeq	238
NBSplice	92
ncdfFlow	1738
ncGTW	225
NCIgraph	235
ncRNAtools	236
ndexr	243
neaGUI	63
nearBynding	258
Nebulosa	1572
NeighborNet	85
nem	271
nempi	227
NetActivity	203
netbenchmark	63
netbiov	164
netboost	216
netboxr	63
netDx	91
nethet	302
netOmics	88
NetPathMiner	296
netprioR	220
netReg	42
netresponse	339
NetSAM	313
netSmooth	299
networkBMA	130
netZooR	143
NeuCA	96
NewWave	257
NGScopy	77
ngsReports	298
nipalsMCIA	206
nnNorm	349
nnSVG	282
NOISeq	805
nondetects	321
NoRCE	275
normalize450K	267
NormalyzerDE	442
NormqPCR	408
normr	381
notame	114
notameStats	84
notameViz	101
NPARC	261
npGSEA	357
NTW	250
nucleoSim	286
nucleR	460
nuCpos	233
nudge	117
nullranges	378
NuPoP	324
NxtIRFcore	81
OAtools	26
occugene	253
OCplus	363
octad	242
ODER	56
odseq	254
OGRE	217
OGSA	83
oligo	3402
oligoClasses	2506
OLIN	437
OLINgui	360
omada	145
OmaDB	363
omicade4	450
OmicCircos	410
omicplotR	226
omicRexposome	291
omicsGMF	91
OmicsLonDA	90
OmicsMarkeR	85
OmicsMLRepoR	111
OMICsPCA	322
omicsPrint	311
omicsViewer	242
Omixer	218
OmnipathR	1641
ompBAM	234
omXplore	202
Onassis	82
oncomix	252
oncoscanR	208
OncoScore	279
OncoSimulR	333
oneChannelGUI	155
oneSENSE	86
onlineFDR	189
ontoCAT	86
ontoProc	429
ontoTools	87
openCyto	1250
openPrimeR	330
openPrimeRui	103
OpenStats	182
OperaMate	40
oposSOM	359
oppar	324
oppti	110
optimalFlow	210
OPWeight	270
OrderedList	356
ORFhunteR	236
ORFik	519
OrganismDbi	3439
Organism.dplyr	432
orthogene	842
orthos	191
OSAT	309
Oscope	361
OSTA.data	221
OTUbase	391
OutlierD	160
OUTRIDER	470
OutSplice	203
OVESEG	251
PAA	374
packFinder	265
padma	256
PADOG	504
pageRank	210
PAIRADISE	280
paircompviz	282
pairedGSEA	186
pairkat	217
pairseqsim	13
pamr	87
pandaR	357
panelcn.mops	338
PAnnBuilder	99
PanomiR	220
panoramic	4
panp	461
PANR	313
PanViz	98
PanVizGenerator	93
PAPi	129
parati	22
pareg	55
parglms	316
parody	370
partCNV	167
PAST	295
Path2PPI	292
pathifier	293
pathlinkR	194
pathMED	106
PathNet	292
PathoStat	292
pathprint	52
pathRender	365
pathVar	154
pathview	5539
pathwayPCA	300
PathwaySplice	101
PatientGeneSets	26
paxtoolsr	182
Pbase	119
pbcmc	58
pcaExplorer	550
pcaGoPromoter	102
pcaMethods	6628
PCAN	331
PCAtools	1389
pcot2	216
PCpheno	236
pcxn	90
PDATK	254
pdInfoBuilder	502
pdmclass	179
PeacoQC	501
peakCombiner	89
peakPantheR	247
PECA	338
peco	255
Pedixplorer	194
pengls	177
PepSetTest	149
PepsNMR	309
pepStat	357
pepXMLTab	270
PERFect	95
periodicDNA	307
perturbatr	51
pfamAnalyzeR	400
PFP	53
PGA	183
pgca	183
PGSEA	294
pgUtils	50
pgxRpi	154
phantasus	302
phantasusLite	175
PharmacoGx	641
phemd	131
phenoDist	96
PhenoGeneRanker	160
phenomis	207
phenopath	435
phenoTest	460
PhenStat	240
philr	492
PhIPData	250
phosphonormalizer	217
PhosR	414
phylobar	5
PhyloProfile	321
phyloseq	7406
Pi	165
piano	818
PICB	157
pickgene	289
PICS	330
Pigengene	316
PING	291
pint	87
pipeComp	288
pipeFrame	298
PIPETS	164
Pirat	147
PIUMA	156
pkgDepTools	221
plaid	44
planet	386
planttfhunter	187
plasmut	156
plateCore	179
plethy	184
plgem	471
plier	452
PlinkMatrix	19
PloGO2	93
plotgardener	432
plotGrouper	226
PLPE	311
plrs	160
PLSDAbatch	174
plw	158
plyinteractions	204
plyranges	1488
plyxp	249
pmm	203
pmp	342
PMScanR	95
PoDCall	190
podkat	436
poem	161
pogos	266
polyester	289
Polyfit	95
PolySTest	151
Polytect	142
POMA	351
posDemux	27
POST	55
postNet	29
PoTRA	58
PowerExplorer	42
powerTCR	473
POWSC	224
ppcseq	226
PPInfer	313
ppiStats	272
pqsfinder	470
prada	204
pram	274
prebs	361
preciseTAD	331
PrecisionTrialDrawer	59
PREDA	421
predictionet	110
preprocessCore	17131
primirTSS	285
PrInCE	247
Prize	46
proActiv	342
proBAMr	314
proBatch	164
PROcess	370
procoil	410
ProCoNA	97
proDA	444
proFIA	120
profileplyr	377
profileScoreDist	249
progeny	1066
projectR	295
pRoloc	838
pRolocGUI	384
PROMISE	317
PRONE	178
PROPER	362
PROPS	266
Prostar	304
prot2D	118
proteasy	55
proteinProfiles	215
ProteoDisco	280
ProteomicsAnnotationHubData	94
ProteoMM	289
proteoQC	91
protGear	234
ProtGenerics	12854
PSEA	176
psichomics	334
PSICQUIC	147
PSMatch	3316
psygenet2r	179
ptairMS	283
PTMods	241
PubScore	58
pulsedSilac	54
puma	465
PureCN	514
pvac	321
pvca	571
Pviz	332
pwalign	8625
PWMEnrich	590
pwOmics	275
pwrEWAS	69
qckitfastq	126
qcmetrics	423
QDNAseq	732
QFeatures	3846
qmtools	222
qpcrNorm	330
qpgraph	631
qPLEXanalyzer	286
qrqc	203
QRscore	146
qsea	352
qsmooth	315
QSutils	304
qsvaR	213
QTLExperiment	184
Qtlizer	239
QUALIFIER	144
quantiseqr	1090
quantro	555
quantsmooth	845
QuartPAC	162
QuasR	799
QuaternaryProd	224
QUBIC	312
queeems	14
qusage	644
qvalue	25281
R3CPET	345
r3Cseq	419
R453Plus1Toolbox	359
R4RNA	947
RadioGx	273
raer	230
RaggedExperiment	1215
RAIDS	170
rain	378
rama	197
RamiGO	77
ramr	240
ramwas	361
RandomWalkRestartMH	119
randPack	300
randRotation	190
RankMap	20
RankProd	605
RAREsim	172
RareVariantVis	354
Rariant	176
Rarr	512
rawDiag	164
rawrr	336
RbcBook1	570
Rbec	157
RBedMethyl	30
RBGL	10166
RBioFormats	435
RBioinf	268
rBiopaxParser	740
rBLAST	278
RBM	276
Rbowtie	668
Rbowtie2	506
RbowtieCuda	86
rbsurv	324
Rbwa	165
Rcade	268
RCAS	393
RCASPAR	220
rcellminer	378
rCGH	531
Rchemcpp	139
RchyOptimyx	110
RcisTarget	1668
RCM	294
Rcollectl	93
Rcpi	396
RCSL	212
Rcwl	272
RcwlPipelines	215
RCX	213
RCy3	1200
RCyjs	337
RCytoscape	82
RDAVIDWebService	145
Rdbi	66
RdbiPgSQL	26
rDGIdb	128
Rdisop	964
RDRToolbox	361
ReactomeContentService4R	75
ReactomeGraph4R	49
ReactomeGSA	395
ReactomePA	5305
readat	66
ReadqPCR	405
reb	218
REBET	219
rebook	285
receptLoss	123
reconsi	190
recount	703
recount3	942
recountmethylation	288
recoup	430
RedeR	558
RedisParam	174
REDseq	356
ReducedExperiment	163
RefNet	119
RefPlus	304
Rega	21
RegEnrich	349
regionalpcs	138
RegionalST	184
regioneR	2459
regioneReloaded	205
regionReport	469
regsplice	275
regutools	280
REMP	320
Repitools	481
ReportingTools	986
reposTools	25
RepViz	212
ReQON	201
ResidualMatrix	4903
RESOLVE	190
Resourcerer	70
restfulSE	176
retrofit	184
ReUseData	161
rexposome	374
rfaRm	246
Rfastp	281
RFGeneRank	15
RFLOMICS	153
rflowcyt	99
rfPred	348
rGADEM	466
RGalaxy	145
rGenomeTracks	188
Rgin	53
RGMQL	75
RgnTX	158
rgoslin	283
RGraph2js	298
Rgraphviz	10584
rGREAT	1045
RGSEA	317
rgsepd	338
rhdf5	26465
rhdf5client	322
rhdf5filters	24703
Rhdf5lib	27313
rhinotypeR	153
Rhisat2	329
Rhtslib	26620
rHVDM	195
RiboCrypt	259
RiboDiPA	257
RiboProfiling	342
ribor	239
riboSeqR	374
ribosomeProfilingQC	297
rifi	179
rifiComparative	173
Rigraphlib	1394
rigvf	141
RImmPort	229
Ringo	416
Rintact	40
RIPAT	85
RIPSeeker	156
Risa	268
RITAN	235
RIVER	293
RJMCMCNucleosomes	288
RLassoCox	186
RLMM	281
RLSeq	65
RMAGEML	26
Rmagpie	311
RMAPPER	51
RMassBank	493
rMAT	124
rmelting	231
RmiR	137
Rmmquant	257
rmspc	222
RNAAgeCalc	307
RNAdecay	185
rnaEditr	234
RNAinteract	181
RNAither	182
RNAmodR	289
RNAmodR.AlkAnilineSeq	253
RNAmodR.ML	284
RNAmodR.RiboMethSeq	236
RNAprobR	99
RNAsense	240
rnaseqcomp	305
RNAseqCovarImpute	171
rnaSeqMap	217
RNASeqPower	389
RNASeqR	70
RnaSeqSampleSize	346
RNAshapeQC	26
RnBeads	664
Rnits	318
roar	370
roastgsa	186
ROC	1632
ROCpAI	216
RolDE	199
Roleswitch	115
Rolexa	95
rols	848
ROntoTools	484
ropls	2130
ROSeq	268
ROTS	501
RPA	395
rprimer	238
RProtoBufLib	3022
RpsiXML	283
rpx	810
Rqc	564
rqt	244
rqubic	306
rRDP	288
Rredland	32
RRHO	318
rrvgo	908
Rsamtools	29376
rsbml	364
rScudo	277
rsemmed	201
RSeqAn	226
rSFFreader	115
RSNPper	42
Rsubread	2416
RSVSim	376
rSWeeP	243
rTANDEM	131
RTCA	294
RTCGA	781
RTCGAToolbox	839
RTN	492
RTNduals	264
RTNsurvival	281
RTools4TB	13
RTopper	393
Rtpca	255
rtracklayer	24129
Rtreemix	254
rTRM	445
rTRMui	302
RUCova	175
runibic	200
Ruuid	65
RUVcorr	276
RUVnormalize	326
RUVSeq	1251
Rvisdiff	188
RVS	244
RWebServices	32
rWikiPathways	609
S4Arrays	50131
S4Vectors	67026
safe	915
SAGElyzer	32
sagenhaft	323
SAGx	204
SAIGEgds	253
samExploreR	50
sampleClassifier	228
SamSPECTRAL	362
sangeranalyseR	395
sangerseqR	826
SanityR	100
SANTA	309
sapFinder	115
saps	26
SARC	111
sarks	227
saseR	172
satuRn	566
savR	88
SBGNview	318
sbgr	9
SBMLR	339
SC3	713
scafari	124
Scale4C	284
ScaledMatrix	15348
scAlign	92
scanMiR	251
scanMiRApp	231
scAnnotatR	241
SCAN.UPC	453
SCANVIS	239
SCArray	258
SCArray.sat	178
SCATE	65
scater	9541
scatterHatch	172
scBFA	251
SCBN	216
scBubbletree	214
scCB2	245
scClassifR	32
scClassify	330
sccomp	298
scConform	22
scDataviz	259
scDblFinder	3456
scDD	465
scDDboost	207
scde	687
scDesign3	220
scDiagnostics	177
scDotPlot	198
scds	845
scECODA	21
SCFA	228
scFeatureFilter	257
scFeatures	222
scfind	38
scGPS	281
scGraphVerse	88
schex	326
scHiCcompare	146
scHOT	283
scider	209
scifer	210
ScISI	260
scLANE	95
scLang	27
scMAGeCK	46
scmap	615
scMerge	596
scMET	217
scmeth	303
scMitoMut	157
scMultiSim	201
SCnorm	364
scone	423
Sconify	237
SCOPE	288
scoreInvHap	276
scoup	149
scp	397
scPassport	21
scPCA	307
scPipe	379
scQTLtools	119
scran	7331
scrapper	1512
scReClassify	263
scRecover	272
screenCounter	186
ScreenR	168
scRepertoire	945
scRNAseqApp	234
scruff	312
scry	550
scShapes	167
scsR	109
scTensor	271
scTGIF	295
scTHI	225
scToppR	24
scTreeViz	223
scTypeEval	21
scuttle	11586
scviR	156
SDAMS	235
seahtrue	181
sechm	293
segmenter	229
segmentSeq	445
selectKSigs	196
SELEX	306
SemDist	329
semisup	215
SEMPLR	31
SemSim	38
SEPA	52
SEPIRA	134
seq2pathway	269
seqArchR	167
seqArchRplus	140
SeqArray	1236
seqbias	219
seqCAT	292
seqCNA	143
seqcombo	206
SeqGate	218
SeqGSEA	395
seq.hotSPOT	160
Seqinfo	29675
seqLogo	3898
seqPattern	1133
seqplots	154
seqsetvis	358
SeqSQC	335
Seqtometry	24
seqTools	253
SeqVarTools	773
SEraster	154
sesame	1113
SETA	94
SEtools	254
sevenbridges	322
sevenC	330
sfi	29
SGCP	199
SGSeq	605
SharedObject	326
shinybiocloader	91
shinyDSP	157
shinyepico	251
shiny.gosling	117
shinyMethyl	387
shinyTANDEM	88
ShortRead	7139
SIAMCAT	343
SICtools	296
sigaR	130
SigCheck	318
sigFeature	449
SigFuge	286
siggenes	3799
sights	255
signatureSearch	374
signeR	356
signet	32
signifinder	221
sigPathway	211
SigsPack	254
sigsquared	266
SIM	342
SIMAT	273
SimBindProfiles	174
SimBu	213
SIMD	212
SimFFPE	224
similaRpeak	317
SIMLR	436
simona	960
simPIC	164
simpleaffy	246
simpleSeg	324
simplifyEnrichment	1408
simulatorAPMS	36
simulatorZ	135
sincell	331
singIST	26
single	110
SingleCellAlleleExperiment	188
SingleCellExperiment	21363
SingleCellSignalR	440
singleCellTK	547
SingleMoleculeFootprinting	218
SingleR	5879
singscore	2126
SiPSiC	163
SISPA	112
sitadela	235
Site2Target	137
sitePath	265
sizepower	303
SJava	26
sketchR	179
skewr	301
slalom	209
SLGI	227
slingshot	3127
slinky	80
SLqPCR	275
SMAD	200
SMAP	197
smartid	166
SmartPhos	54
SMITE	333
smoothclust	150
smoppix	151
SMTrackR	30
SNAGEE	292
snapCGH	301
snapcount	239
snifter	615
snm	358
SNPchip	236
SNPediaR	227
SNPhood	400
snpMatrix	40
SNPRelate	2323
snpStats	2697
soGGi	536
sojourner	66
SomatiCA	75
SomaticSignatures	416
SOMNiBUS	209
sosta	196
SpaceMarkers	167
SpacePAC	231
SpaceTrooper	146
spacexr	467
spade	63
Spaniel	277
SpaNorm	207
spARI	99
sparrow	513
SparseArray	55824
sparseDOSSA	106
sparseMatrixStats	18833
sparsenetgls	202
SparseSignatures	307
spaSim	206
SpatialArtifacts	27
SpatialCPie	248
spatialDE	279
SpatialDecon	363
SpatialExperiment	8416
SpatialExperimentIO	217
spatialFDA	183
SpatialFeatureExperiment	375
spatialHeatmap	250
SpatialOmicsOverlay	203
spatialSimGP	141
spatzie	150
speckle	523
specL	332
SpeCond	329
Spectra	3803
SpectralTAD	299
SpectraQL	146
SpectriPy	92
SPEM	291
SPIA	1096
SPIAT	273
SPICEY	95
spicyR	417
SpidermiR	140
SpiecEasi	54
spikeLI	307
spiky	227
spillR	155
spkTools	317
splatter	774
splicegear	163
SpliceImpactR	24
splicelogic	19
spliceR	138
spliceSites	95
SpliceWiz	314
SplicingFactory	201
SplicingGraphs	409
SplineDV	162
splineTCDiffExpr	6
splineTimeR	303
SPLINTER	299
splots	385
SpNeigh	30
SPONGE	301
spoon	152
SpotClean	246
SPOTlight	522
spotSegmentation	93
SpotSweeper	285
spqn	250
SPsimSeq	275
SQLDataFrame	174
SQUADD	129
squallms	149
sRACIPE	289
SRAdb	729
sRAP	88
SRGnet	57
srnadiff	278
sscore	246
sscu	285
sSeq	356
ssize	325
sSNAPPY	236
SSPA	267
ssPATHS	232
ssrch	215
ssviz	299
StabMap	170
STADyUM	101
stageR	518
stam	46
STAN	170
standR	344
staRank	156
StarBioTrek	137
staRgate	48
Starr	186
STATegRa	417
StatescopeR	27
Statial	268
statTarget	424
STdeconvolve	99
stepNorm	321
stepwiseCM	75
stJoincount	200
stPipe	109
strandCheckR	268
Streamer	307
STRINGdb	3425
STROMA4	176
struct	378
Structstrings	301
structToolbox	289
StructuralVariantAnnotation	420
SubCellBarCode	245
subSeq	361
SUITOR	178
SummarizedBenchmark	178
SummarizedExperiment	49687
Summix	171
SuperCellCyto	99
supersigs	270
supraHex	361
surfaltr	255
SurfR	172
survClust	142
survcomp	1964
survtype	234
Sushi	224
sva	10029
svaNUMT	221
SVAPLSseq	82
svaRetro	218
SVM2CRM	89
SVMDO	190
SVP	174
SWATH2stats	279
SwathXtend	208
swfdr	314
SwimR	94
switchBox	280
switchde	278
synapsis	211
synapter	316
synergyfinder	420
SynExtend	274
synlet	242
SynMut	223
syntenet	307
systemPipeR	1785
systemPipeShiny	245
systemPipeTools	226
tadar	188
TADCompare	270
tanggle	257
TAPseq	269
target	276
TargetDecoy	227
TargetScore	290
TargetSearch	305
TarSeqQC	152
TaxSEA	155
TBSignatureProfiler	297
TCC	580
TCGAbiolinks	6095
TCGAbiolinksGUI	85
TCGAutils	1027
TCseq	718
TDARACNE	149
TDbasedUFE	190
TDbasedUFEadv	223
TEKRABber	213
TENET	155
TENxIO	353
tenXplore	293
TEQC	399
terapadog	153
ternarynet	257
terraTCGAdata	187
TFARM	239
TFBSTools	3879
TFEA.ChIP	372
TFHAZ	324
TFutils	335
tidybulk	516
tidyCoverage	192
tidyexposomics	49
tidyFlowCore	142
tidyomics	175
tidyprint	32
tidysbml	145
tidySingleCellExperiment	522
tidySpatialExperiment	233
tidySummarizedExperiment	433
tidytof	76
tigre	392
TileDBArray	235
tilingArray	484
timecourse	493
timeOmics	279
timescape	215
TimeSeriesExperiment	91
TimiRGeN	89
TIN	341
TissueEnrich	416
TitanCNA	260
tkWidgets	2024
tLOH	208
TMixClust	268
TMSig	155
TNBC.CMS	89
TnT	296
TOAST	788
tofsims	93
tomoda	213
tomoseqr	204
TOP	193
ToPASeq	96
topconfects	355
topdownr	318
topGO	2756
toppgene	16
ToxicoGx	288
TPP	423
TPP2D	248
tpSVG	163
tracktables	465
trackViewer	989
tradeSeq	1309
TrajectoryGeometry	171
TrajectoryUtils	3231
transcriptogramer	325
transcriptR	350
transformGamPoi	242
transite	260
tRanslatome	366
transmogR	169
transomics2cytoscape	221
TransView	359
TraRe	47
traseR	365
Travel	11
traviz	103
TreeAndLeaf	285
treeclimbR	169
treeio	29161
treekoR	271
TreeSummarizedExperiment	2731
TREG	224
trena	175
TReNA	6
Trendy	293
TRESS	247
tricycle	532
TrIdent	135
triform	100
trigger	214
trio	367
triplex	433
tripr	236
tRNA	330
tRNAdbImport	278
tRNAscanImport	287
TRONCO	441
TSAR	152
TSCAN	772
tscR	65
tspair	158
TSRchitect	155
TSSi	114
ttgsea	190
TTMap	298
TurboNorm	374
TVTB	371
tweeDEseq	366
twilight	446
twoddpcr	284
txcutr	213
txdbmaker	6024
tximeta	1861
tximport	4986
TxRegInfra	43
TypeInfo	191
UCell	2287
UCSC.utils	33533
Ularcirc	306
UMI4Cats	291
uncoverappLib	237
UNDO	320
unifiedWMWqPCR	270
UniProt.ws	1086
Uniquorn	320
universalmotif	1539
updateObject	211
UPDhmm	165
uSORT	334
VAExprs	203
VanillaICE	566
VarCon	249
variancePartition	2017
VariantAnnotation	9721
VariantExperiment	161
VariantFiltering	421
VariantTools	407
vasp	21
VaSP	289
vbmp	383
VCFArray	301
VDJdive	201
Vega	95
VegaMC	368
velociraptor	342
veloviz	185
VennDetail	408
VERSO	203
vidger	302
viper	1411
virtualArray	27
ViSEAGO	356
VisiumIO	302
visiumStitched	168
vissE	286
VISTA	21
vmrseq	152
Voyager	339
VplotR	280
vsclust	207
vsn	6660
vtpnet	328
vulcan	228
waddR	161
wateRmelon	1116
wavClusteR	339
waveTiling	148
wavFeatExt	18
weaver	295
webbioc	418
weitrix	314
widgetInvoke	21
widgetTools	1952
wiggleplotr	361
wpm	240
wppi	169
Wrench	2164
XAItest	143
XBSeq	177
xCell2	262
XCIR	27
xcms	2544
xcore	226
XDE	465
XeniumIO	145
xenLite	156
Xeva	263
XINA	248
xmapbridge	281
xmapcore	25
XNAString	145
xps	151
XVector	60199
y2hStat	26
yamss	370
YAPSA	383
yaqcaffy	251
yarn	371
ZarrArray	78
zellkonverter	3434
zenith	317
zFPKM	270
zinbwave	1059
zitools	149
zlibbioc	24209
ZygosityPredictor	190