Package	Download_score
a4	160
a4Base	180
a4Classif	152
a4Core	186
a4Preproc	179
a4Reporting	150
ABAEnrichment	37
ABarray	165
abseqR	118
ABSSeq	178
acde	138
ACE	141
aCGH	211
ACME	188
ADaCGH2	145
ADAM	200
ADAMgui	118
ADAPT	27
adaptest	13
adductomicsR	113
ADImpute	123
adSplit	150
adverSCarial	88
AffiXcan	111
affxparser	1584
affy	7665
affycomp	179
AffyCompatible	69
affyContam	165
affycoretools	397
AffyExpress	53
affyILM	146
affyio	7785
affylmGUI	172
affyPara	54
affypdnn	55
affyPLM	927
affyQCReport	58
AffyRNADegradation	136
AffyTiling	39
AGDEX	135
aggregateBioVar	120
Agi4x44PreProcess	22
agilp	153
AgiMicroRna	207
AHMassBank	90
AIMS	341
airpart	115
alabaster	102
alabaster.base	3394
alabaster.bumpy	102
alabaster.files	83
alabaster.mae	103
alabaster.matrix	3397
alabaster.ranges	3268
alabaster.sce	1112
alabaster.schemas	3054
alabaster.se	3185
alabaster.sfe	10
alabaster.spatial	107
alabaster.string	102
alabaster.vcf	104
ALDEx2	1221
alevinQC	133
AllelicImbalance	150
AlphaBeta	109
AlphaMissenseR	98
alpine	38
ALPS	11
AlpsNMR	136
alsace	38
altcdfenvs	154
AMARETTO	206
AMOUNTAIN	124
amplican	135
ampliQueso	32
AnalysisPageServer	30
anamiR	12
Anaquin	115
ANCOMBC	1260
AneuFinder	148
ANF	119
animalcules	255
annaffy	292
AnnBuilder	11
annmap	126
annotate	16955
AnnotationDbi	36761
AnnotationFilter	10782
AnnotationForge	1865
AnnotationFuncs	42
AnnotationHub	11106
AnnotationHubData	304
annotationTools	162
annotatr	458
anota	140
anota2seq	132
antiProfiles	131
AnVIL	491
AnVILAz	63
AnVILBase	165
AnVILBilling	98
AnVILGCP	67
AnVILPublish	106
AnVILWorkflow	89
APAlyzer	125
apComplex	148
apeglm	3725
APL	190
applera	3
appreci8R	109
aroma.light	1776
ArrayExpress	421
ArrayExpressHTS	45
arrayMagic	9
arrayMvout	138
arrayQCplot	3
arrayQuality	236
arrayQualityMetrics	454
ArrayTools	51
ArrayTV	37
ARRmNormalization	133
artMS	127
ASAFE	104
ASEB	127
ASGSCA	130
ASICS	147
asmn	5
ASpediaFI	23
ASpli	145
AssessORF	199
ASSET	156
ASSIGN	158
assorthead	5895
ASURAT	108
ATACCoGAPS	44
ATACseqQC	389
ATACseqTFEA	95
atena	110
AtlasRDF	20
atSNP	126
attract	151
AUCell	2628
autonomics	106
Autotuner	10
AWFisher	116
awst	101
BaalChIP	132
BAC	48
bacon	185
BADER	132
BadRegionFinder	112
BAGS	139
ballgown	549
bambu	299
bamsignals	931
BANDITS	125
bandle	104
Banksy	244
banocc	130
barbieQ	7
barcodetrackR	106
basecallQC	123
BaseSpaceR	139
Basic4Cseq	136
BASiCS	159
BASiCStan	122
BasicSTARRseq	112
basilisk	3277
basilisk.utils	3176
batchelor	3948
BatchQC	163
BatchSVG	8
BayesKnockdown	110
BayesPeak	46
BayesSpace	296
bayNorm	136
baySeq	445
BBCAnalyzer	128
BCRANK	163
bcSeq	113
BDMMAcorrect	32
beachmat	15565
beachmat.hdf5	145
beachmat.tiledb	29
beadarray	646
beadarraySNP	69
BeadDataPackR	537
BeadExplorer	7
BEARscc	67
BEAT	133
BEclear	139
bedbaser	19
beer	100
benchdamic	102
BERT	84
betaHMM	80
betr	43
bettr	82
BG2	95
bgafun	47
BgeeCall	99
BgeeDB	155
BGmix	43
bgx	109
BHC	76
BicARE	166
BiFET	118
BiGGR	126
bigmelon	125
bigmemoryExtras	35
bigPint	29
bim	4
BindingSiteFinder	105
bioassayR	133
Biobase	50428
biobroom	260
biobtreeR	93
bioCancer	122
BioCartaImage	88
BiocBaseUtils	6715
BiocBook	113
BiocCaseStudies	53
BiocCheck	1573
biocDatasets	9
BiocDockerManager	15
BiocFHIR	98
BiocFileCache	25022
BiocGenerics	58191
biocGraph	269
BiocHail	55
BiocHubsShiny	126
BiocInstaller	174
BiocIO	19379
biocmake	38
BiocNeighbors	10892
BiocOncoTK	65
BioCor	130
BiocParallel	44021
BiocPkgTools	184
biocroxytest	90
BiocSet	362
BiocSingular	12687
BiocSklearn	144
BiocStyle	5435
biocthis	271
BiocVersion	60847
biocViews	4318
BiocWorkflowTools	202
biodb	145
biodbChebi	108
biodbExpasy	51
biodbHmdb	111
biodbKegg	67
biodbLipidmaps	31
biodbMirbase	14
biodbNcbi	98
biodbNci	104
biodbUniprot	96
bioDist	274
BioGA	59
biomaRt	21480
BioMedR	4
biomformat	5562
BioMM	24
BioMVCClass	150
biomvRCNS	131
BioNAR	117
BioNERO	253
BioNet	275
BioNetStat	60
BioQC	171
BioSeqClass	49
biosigner	140
Biostrings	48051
biosvd	38
BioTIP	124
biotmle	119
biovizBase	4937
BiRewire	213
birta	40
birte	24
biscuiteer	115
BiSeq	151
BitSeq	56
blacksheepr	119
blima	132
BLMA	118
BloodGen3Module	146
bluster	5634
bnbc	208
bnem	100
BOBaFIT	98
borealis	93
BPRMeth	134
BRAIN	185
brainflowprobes	31
brainImageR	6
BrainSABER	16
BrainStars	40
branchpointer	136
breakpointR	118
BreastSubtypeR	8
brendaDb	112
BREW3R.r	81
BRGenomics	54
bridge	52
BridgeDbR	139
broadSeq	64
BrowserViz	176
BrowserVizDemo	15
BSgenome	15153
BSgenomeForge	194
bsseq	1353
BubbleTree	143
BufferedMatrix	141
BufferedMatrixMethods	136
bugsigdbr	306
BulkSignalR	15
BUMHMM	137
bumphunter	2496
BumpyMatrix	370
BUS	146
BUScorrect	113
BUSpaRse	220
BUSseq	110
CaDrA	86
CAEN	94
CAFE	131
CAGEfightR	269
cageminer	104
CAGEr	291
CALIB	55
calm	90
CAMERA	475
CAMTHC	11
CaMutQC	83
canceR	143
cancerclass	378
CancerInSilico	30
CancerMutationAnalysis	46
CancerSubtypes	75
CAnD	34
caOmicsV	26
cardelino	104
Cardinal	269
CardinalIO	187
CARDspa	19
CARNIVAL	194
casper	124
CATALYST	555
Category	1395
categoryCompare	134
CatsCradle	57
CausalR	130
cbaf	113
CBEA	81
cBioPortalData	355
CBNplot	140
cbpManager	103
CCAFE	9
ccfindR	128
ccImpute	101
ccmap	139
CCPlotR	110
CCPROMISE	111
ccrepe	183
CDI	87
celaref	119
celda	765
CellaRepertorium	28
CellBarcode	114
cellbaseR	124
CellBench	169
cellGrowth	34
cellHTS	45
cellHTS2	149
CelliD	229
cellity	120
CellMapper	109
cellmigRation	99
CellMixS	128
CellNOptR	165
cellscape	102
CellScore	111
CellTrails	117
cellTree	28
cellxgenedp	124
CEMiTool	187
censcyt	95
Cepo	157
ceRNAnetsim	92
CeTF	117
CexoR	135
CFAssay	110
cfdnakit	91
cfDNAPro	123
cfTools	89
CGEN	133
CGHbase	347
CGHcall	325
cghMCR	171
CGHnormaliter	144
CGHregions	150
ChAMP	717
CHARGE	12
charm	50
ChemmineOB	326
ChemmineR	789
CHETAH	148
chevreulPlot	10
chevreulProcess	10
chevreulShiny	9
ChIC	23
Chicago	144
chihaya	176
chimera	44
chimeraviz	145
ChIPanalyser	120
ChIPComp	125
chipenrich	169
ChIPexoQual	115
ChIPpeakAnno	933
ChIPQC	364
ChIPseeker	1964
chipseq	571
ChIPseqR	160
ChIPSeqSpike	18
ChIPsim	148
ChIPXpress	113
chopsticks	157
chroGPS	45
chromDraw	129
ChromHeatMap	145
ChromoViz	7
chromPlot	235
ChromSCape	112
chromstaR	102
chromswitch	34
chromVAR	1173
CHRONOS	116
cicero	268
CIMICE	98
CINdex	123
circRNAprofiler	116
CircSeqAlignTk	85
cisPath	115
CiteFuse	126
ClassifyR	337
cleanUpdTSeq	137
CleanUpRNAseq	61
cleaver	241
clevRvis	103
clippda	147
clipper	148
cliProfiler	96
cliqueMS	136
Clomial	117
Clonality	52
clonotypeR	40
clst	138
clstutils	139
CluMSID	101
ClustAll	90
clustComp	123
clusterExperiment	316
ClusterFoldSimilarity	87
ClusterJudge	116
clusterProfiler	21429
clusterSeq	122
ClusterSignificance	117
clusterStab	159
clustifyr	197
ClustIRR	97
clustSIGNAL	8
CMA	204
cmapR	447
CNAnorm	137
CNEr	3166
cn.farms	141
cn.mops	219
CNORdt	128
CNORfeeder	136
CNORfuzzy	137
CNORode	138
CNPBayes	24
CNTools	181
CNVfilteR	97
CNVgears	33
cnvGSA	137
CNViz	94
CNVMetrics	103
CNVPanelizer	126
CNVRanger	134
CNVrd2	130
CNVtools	40
cobindR	43
CoCiteStats	142
COCOA	123
codelink	166
CODEX	153
coexnet	21
CoGAPS	325
cogena	149
cogeqc	113
Cogito	101
coGPS	139
COHCAP	46
cola	171
comapr	97
combi	129
coMET	82
coMethDMR	112
compartmap	39
COMPASS	151
compcodeR	149
compEpiTools	129
CompGO	33
ComplexHeatmap	16163
CompoundDb	257
ComPrAn	99
compSPOT	80
conclus	11
concordexR	113
condcomp	5
condiments	137
CONFESS	124
consensus	107
ConsensusClusterPlus	2893
consensusDE	107
consensusOV	123
consensusSeekeR	124
consICA	186
CONSTANd	101
contiBAIT	37
conumee	216
convert	184
copa	143
COPDSexualDimorphism	5
copynumber	123
CopyNumber450k	21
CopyNumberPlots	137
CopywriteR	45
coRdon	221
CoRegFlux	8
CoRegNet	56
CoreGx	235
Cormotif	144
CorMut	35
coRNAi	39
corral	122
CORREP	46
coseq	188
CoSIA	82
cosmiq	198
cosmo	17
cosmoGUI	16
cosmosR	138
COSNet	125
COTAN	125
CountClust	26
countsimQC	295
covEB	111
CoverageView	132
covRNA	108
CPSM	14
cpvSNP	128
cqn	310
CRImage	155
CRISPRball	94
crisprBase	150
crisprBowtie	139
crisprBwa	91
crisprDesign	135
crisprScore	153
CRISPRseek	163
crisprseekplus	34
crisprShiny	83
CrispRVariants	145
crisprVerse	121
crisprViz	119
crlmm	285
CrossICC	5
crossmeta	116
crumblr	9
crupR	6
CSAR	153
csaw	475
csdR	95
CSSP	35
CSSQ	97
ctc	274
CTdata	92
CTDquerier	115
CTexploreR	82
ctgGEM	11
cTRAP	122
ctsGE	119
CTSV	101
cummeRbund	265
CuratedAtlasQueryR	104
customCMPdb	112
customProDB	148
CVE	17
cyanoFilter	98
cycle	141
cydar	138
cypress	81
CytoDx	126
cytofast	12
cytofkit	33
CyTOFpower	52
cytofQC	98
CytoGLMM	103
cytoKernel	114
cytolib	2384
cytomapper	317
CytoMDS	82
cytoMEM	138
CytoML	447
CytoPipeline	110
CytoPipelineGUI	86
CytoTree	15
cytoviewer	130
dada2	2433
dagLogo	138
daMA	139
DAMEfinder	107
DaMiRseq	127
Damsel	73
dandelionR	21
DAPAR	164
dar	72
DART	144
DASC	2
DASiR	25
dasper	17
DAVIDQuery	30
DBChIP	48
dcanr	198
DCATS	113
dce	79
dcGSA	105
DChIPRep	29
ddCt	169
ddgraph	33
ddPCRclust	131
dearseq	232
debCAM	117
debrowser	154
DECIPHER	2797
deco	20
DEComplexDisease	26
decompTumor2Sig	134
DeconRNASeq	320
decontam	1625
decontX	290
DeconvoBuddies	9
deconvR	114
decoupleR	1301
DEDS	48
DeepBlueR	35
DeepPINCS	99
deepSNV	181
DeepTarget	61
DEFormats	249
DegCre	76
DegNorm	107
DEGraph	106
DEGreport	603
DEGseq	232
DelayedArray	42710
DelayedDataFrame	104
DelayedMatrixStats	15983
DelayedRandomArray	103
DelayedTensor	104
DELocal	116
deltaCaptureC	100
deltaGseg	122
DeMAND	107
DeMixT	133
demuxmix	259
demuxSNP	86
densvis	1237
DEP	594
DepecheR	125
DepInfeR	96
DeProViR	41
DEqMS	289
derfinder	488
derfinderHelper	484
derfinderPlot	153
DEScan2	115
DESeq	183
DESeq2	21960
DEsingle	284
DESpace	104
destiny	702
DEsubs	111
DEWSeq	110
DExMA	104
DEXSeq	1394
dexus	46
DFP	146
DFplyr	46
DIAlignR	57
DiffBind	1076
diffcoexp	167
diffcyt	430
DifferentialRegulation	102
diffGeneAnalysis	127
diffHic	168
DiffLogo	138
diffloop	36
diffuStats	127
diffUTR	87
diggit	121
Dino	101
dinoR	80
Director	85
dir.expiry	3284
DirichletMultinomial	4510
discordant	137
DiscoRhythm	125
distinct	248
dittoSeq	1317
divergence	103
dks	114
DMCFB	113
DMCHMM	107
DMRcaller	154
DMRcate	1094
DMRforPairs	51
DMRScan	99
dmrseq	203
DNABarcodeCompatibility	92
DNABarcodes	194
DNAcopy	4698
DNAcycP2	12
DNAfusion	97
DNaseR	7
DNAshapeR	143
domainsignatures	38
DominoEffect	107
dominoSignal	55
doppelgangR	206
DOQTL	28
Doscheda	118
DOSE	20734
doseR	112
doubletrouble	111
dpeak	23
drawProteins	213
dreamlet	123
DRIMSeq	296
DriverNet	121
DropletUtils	2398
drugTargetInteractions	105
DrugVsDisease	146
dSimer	12
DSS	726
dStruct	93
DTA	128
dualKS	50
Dune	93
DupChecker	24
DuplexDiscovereR	44
dupRadar	174
dyebias	152
DynDoc	1395
easier	137
EasyCellType	121
easylift	93
EasyqpcR	44
easyreporting	105
easyRNASeq	174
EBarrays	195
EBcoexpress	143
EBImage	2734
EBSEA	108
EBSeq	382
EBSeqHMM	57
ecolitk	161
EDASeq	1592
edd	21
EDDA	36
edge	161
edgeR	23701
EDIRquery	87
eds	373
eegc	46
EGAD	128
EGSEA	270
eiR	127
eisa	55
eisaR	155
ELBOW	35
ELMER	231
ELViS	11
EMDomics	147
EmpiricalBrownsMethod	138
ENCODExplorer	35
EnhancedVolcano	5488
enhancerHomologSearch	87
EnMCB	108
ENmix	325
EnrichDO	53
EnrichedHeatmap	601
EnrichmentBrowser	522
enrichplot	20654
enrichTF	33
enrichViewNet	92
ensembldb	9527
ensemblVEP	103
ENVISIONQuery	40
epialleleR	108
EpiCompare	66
epidecodeR	98
EpiDISH	661
epigenomix	134
epigraHMM	105
epihet	17
EpiMix	99
epimutacions	95
epiNEM	126
EpipwR	48
epiregulon	84
epiregulon.extra	88
epistack	102
epistasisGA	94
EpiTxDb	101
epivizr	153
epivizrChart	116
epivizrData	123
epivizrServer	115
epivizrStandalone	107
erccdashboard	154
erma	151
ERSSA	113
esATAC	129
escape	447
escheR	115
esetVis	120
eudysbiome	121
evaluomeR	109
EventPointer	127
EWCE	283
ExCluster	91
ExiMiR	142
exomeCopy	153
exomePeak	43
exomePeak2	78
exonmap	14
ExperimentHub	7639
ExperimentHubData	260
ExperimentSubset	116
explorase	43
ExploreModelMatrix	240
ExpressionAtlas	232
ExpressionView	49
exprExternal	2
externalVector	15
extraChIPs	124
fabia	212
facopy	23
factDesign	146
factR	100
faers	109
FamAgg	133
famat	101
farms	63
fastLiquidAssociation	125
FastqCleaner	130
fastreeR	122
fastseg	765
fbat	12
FCBF	42
fCCAC	113
fCI	124
fcoex	21
fcScan	112
fdrame	139
FEAST	161
FeatSeekR	86
fedup	100
FELLA	179
FEM	39
fenr	91
ffpe	139
fgga	97
FGNet	146
fgsea	20977
FilterFFPE	111
findIPs	84
FindIT2	107
FindMyFriends	34
FISHalyseR	117
fishpond	272
FitHiC	132
flagme	125
FLAMES	116
flipflop	31
flowAI	544
flowBeads	130
flowBin	122
flowcatchR	143
flowCHIC	132
flowCL	39
flowClean	250
flowClust	699
flowCore	2435
flowCut	156
flowCyBar	112
flowDensity	275
flowFit	33
flowFlowJo	25
flowFP	181
flowGate	121
flowGraph	97
flowMap	54
flowMatch	135
flowMeans	165
flowMerge	157
flowPeaks	196
flowPhyto	17
flowPloidy	114
flowPlots	120
flowQ	41
flowQB	35
FlowRepositoryR	32
FlowSOM	1003
flowSpecs	126
flowSpy	8
flowStats	457
flowTime	121
flowTrans	157
flowType	42
flowUtils	65
flowViz	887
flowVS	163
flowWorkspace	1066
fmcsR	256
fmrs	144
fobitools	109
focalCall	29
FoldGO	35
FourCSeq	34
FRASER	156
frenchFISH	87
FRGEpistasis	112
frma	170
frmaTools	140
FScanR	15
FunChIP	43
FunciSNP	43
funOmics	61
funtooNorm	113
FuseSOM	106
G4SNVHunter	37
GA4GHclient	111
GA4GHshiny	106
gaga	148
gage	830
gaggle	65
gaia	46
GAPGOM	18
GAprediction	102
garfield	107
GARS	107
GateFinder	107
gatom	103
gaucho	26
GBScleanR	128
gcapc	120
gcatest	140
gCMAP	41
gCMAPWeb	34
gCrisprTools	120
gcrma	1084
GCSConnection	10
GCSFilesystem	9
GCSscore	25
GDCRNATools	229
gDNAx	95
gDR	82
gDRcore	87
gDRimport	89
gDRstyle	91
gDRutils	87
GDSArray	236
gdsfmt	2108
GeDi	91
geecc	37
GEM	111
gemini	95
gemma.R	119
genArise	129
genbankr	67
gene2pathway	15
GeneAccord	24
GeneAnswers	58
geneAttribution	122
GeneBreak	122
geneClassifiers	113
GENE.E	27
GeneExpressionSignature	160
genefilter	11540
genefu	317
GeneGA	110
GeneGeneInteR	111
GeneGroupAnalysis	10
GeneMeta	169
GeneNetworkBuilder	146
GeneOverlap	636
geneplast	146
geneplotter	4398
GeneR	18
geneRecommender	142
GeneRegionScan	155
GeneRfold	7
geneRxCluster	137
GeneSelectMMD	141
GeneSelector	43
GENESIS	400
GeneSpring	13
GeneStructureTools	121
geNetClassifier	156
GeneticsBase	12
GeneticsDesign	44
GeneticsPed	158
GeneTonic	302
GeneTraffic	12
GeneTS	7
geneXtendeR	114
GENIE3	1353
genoCN	119
GenoGAM	24
genomation	656
GenomAutomorphism	93
GenomeBase	2
GenomeGraphs	58
GenomeInfoDb	55129
genomeIntervals	187
genomes	141
GenomicAlignments	22633
GenomicDataCommons	974
GenomicDistributions	152
GenomicFeatures	17545
GenomicFiles	1068
genomicInstability	116
GenomicInteractionNodes	96
GenomicInteractions	399
GenomicOZone	117
GenomicPlot	108
GenomicRanges	45414
GenomicScores	600
GenomicSuperSignature	117
GenomicTuples	128
Genominator	48
genoset	48
genotypeeval	38
GenoView	16
genphen	20
GenProSeq	90
GenRank	14
GenVisR	307
GeoDiff	112
GEOexplorer	113
GEOfastq	121
GEOmetadb	278
geomeTriD	51
GeomxTools	380
GEOquery	9882
GEOsearch	15
GEOsubmission	139
GeoTcgaData	210
gep2pep	107
gespeR	79
getDEE2	102
geva	104
GEWIST	114
geyser	26
gff3Plotter	3
gg4way	88
GGBase	55
ggbio	1782
ggcyto	787
ggkegg	534
ggmanh	278
ggmsa	556
GGPA	97
ggsc	136
ggseqalign	60
ggspavis	227
GGtools	63
ggtree	22433
ggtreeDendro	102
ggtreeExtra	1159
ggtreeSpace	82
GIGSEA	101
ginmappeR	83
gINTomics	67
girafe	166
GISPA	35
GLAD	219
GladiaTOX	104
Glimma	1018
glmGamPoi	4958
glmSparseNet	233
GlobalAncova	994
globalSeq	111
globaltest	1765
GloScope	96
gmapR	165
GmicR	106
gmoviz	103
GMRP	110
GNET2	100
GNOSIS	90
goCluster	2
GOexpress	154
GOfuncR	341
GOFunction	43
GoogleGenomics	22
GOpro	162
goProfiles	161
GOSemSim	19378
goseq	1444
GOSim	83
goSorensen	99
goSTAG	124
GOstats	1312
GOsummaries	56
GOTHiC	138
goTools	146
GPA	101
gpart	22
gpls	263
gprege	38
gpuMagic	97
gQTLBase	32
gQTLstats	36
GrafGen	79
gramm4R	9
GRaNIE	125
granulator	159
graper	104
graph	19396
GraphAlignment	123
GraphAT	160
graphite	3174
GraphPAC	93
GRENITS	120
GreyListChIP	984
GRmetrics	149
groHMM	123
GRridge	32
GSALightning	100
GSAR	167
GSCA	129
gscreend	111
GSEABase	8736
GSEABenchmarkeR	130
GSEAlm	157
GSEAmining	110
gsean	113
GSgalgoR	104
GSReg	124
GSRI	137
GSVA	7270
gtrellis	171
GUIDEseq	138
Guitar	195
Gviz	3185
GWAS.BAYES	109
gwascat	599
GWASTools	647
gwasurvivr	139
GWENA	257
gypsum	3028
h5mread	433
h5vc	155
hapFabia	139
Harman	179
HarmonizR	103
Harshlight	142
hca	104
HCABrowser	8
HCAExplorer	6
HCAMatrixBrowser	2
HCsnip	32
HDF5Array	14682
HDTD	108
hdxmsqc	70
heatmaps	293
Heatplus	458
HelloRanges	133
HELP	140
HEM	147
hermes	269
HERON	85
Herper	152
hexbin	53
HGC	105
hiAnnotator	136
HIBAG	176
HicAggR	80
HiCBricks	164
HiCcompare	243
HiCDCPlus	134
HiCDOC	105
HiCExperiment	171
HiContacts	162
HiCool	99
HiCParser	18
hicrep	10
hicVennDiagram	91
hierGWAS	126
hierinf	91
HilbertCurve	153
HilbertVis	205
HilbertVisGUI	97
HiLDA	112
hipathia	219
HIPPO	100
hiReadsProcessor	134
HIREewas	107
HiTC	206
hmdbQuery	128
HMMcopy	364
HoloFoodR	60
hoodscanR	124
hopach	303
HPAanalyze	196
hpar	279
HPAStainR	12
HPiP	104
HTqPCR	103
HTSanalyzeR	47
HTSeqGenie	51
htSeqTools	44
HTSFilter	227
HuBMAPR	47
HubPub	152
HumanTranscriptomeCompendium	51
hummingbird	94
HybridExpress	95
HybridMTest	164
hypeR	157
hyperdraw	151
hypergraph	176
iASeq	116
iasva	119
iBBiG	153
ibh	126
iBMQ	103
iCARE	172
Icens	402
icetea	104
iCheck	121
iChip	143
iClusterPlus	428
iCNV	116
iCOBRA	310
ideal	137
IdeoViz	141
idiogram	149
IdMappingAnalysis	42
IdMappingRetrieval	40
idpr	115
idr2d	107
IFAA	92
iFlow	9
iGC	125
IgGeneUsage	104
igvR	159
igvShiny	98
IHW	662
illuminaio	2689
ILoReg	105
imageHTS	61
imageTCGA	7
IMAS	107
imcRtools	258
Imetagene	32
IMMAN	105
immApex	40
ImmuneSpaceR	36
immunoClust	128
immunogenViewer	57
immunotation	106
IMPCdata	107
ImpulseDE	12
ImpulseDE2	20
impute	10571
INDEED	89
iNETgrate	94
infercnv	1188
infinityFlow	122
Informeasure	97
InPAS	136
INPower	130
inSilicoDb	30
inSilicoMerging	32
INSPEcT	128
INTACT	90
InTAD	113
intansv	138
interacCircos	103
InteractionSet	1737
InteractiveComplexHeatmap	423
interactiveDisplay	154
interactiveDisplayBase	4163
InterCellar	117
IntEREst	109
InterMineR	89
IntOMICS	9
IntramiRExploreR	110
inveRsion	37
IONiseR	139
iontree	30
iPAC	94
iPath	90
ipdDb	190
IPO	219
IPPD	40
IRanges	55450
IRISFGM	20
IrisSpatialFeatures	5
ISAnalytics	85
iSEE	487
iSEEde	102
iSEEfier	89
iSEEhex	135
iSEEhub	187
iSEEindex	92
iSEEpathways	93
iSEEtree	92
iSEEu	151
iSeq	119
ISLET	104
islify	6
iSNetwork	4
isobar	159
IsoBayes	89
IsoCorrectoR	137
IsoCorrectoRGUI	105
IsoformSwitchAnalyzeR	299
IsoGeneGUI	54
ISoLDE	98
isomiRs	167
iSPlot	6
ITALICS	135
iterativeBMA	142
iterativeBMAsurv	124
iterClust	33
iteremoval	18
IVAS	129
ivygapSE	116
IWTomics	131
jazzPanda	15
jmosaics	25
joda	41
JunctionSeq	21
karyoploteR	771
katdetectr	103
KBoost	88
KCsmart	145
kebabs	168
KEGGgraph	5263
KEGGlincs	120
keggorth	7
keggorthology	247
KEGGprofile	48
KEGGREST	36631
KEGGSOAP	24
kimod	16
KinSwingR	108
kissDE	105
kmcut	61
KnowSeq	115
knowYourCG	82
koinar	53
LACE	190
lapmix	110
LBE	221
ldblock	152
LEA	647
LedPred	107
lefser	548
lemur	111
les	138
levi	92
lfa	307
Lheuristic	9
limma	35180
limmaGUI	160
limpa	12
limpca	85
LimROTS	14
LINC	14
LineagePulse	29
lineagespot	90
LinkHD	118
Linnorm	183
LinTInd	96
lionessR	115
lipidr	162
LiquidAssociation	135
lisaClust	171
lmdme	134
LMGene	49
LOBSTAHS	145
loci2path	117
logicFS	158
logitT	58
Logolas	15
lol	31
LOLA	236
LoomExperiment	626
LowMACA	36
LPE	148
LPEadj	68
lpNet	125
lpsymphony	856
LRBaseDbi	115
LRcell	98
lumi	1201
lute	79
LVSmiRNA	38
LymphoSeq	128
M3C	605
M3D	28
M3Drop	558
m6Aboost	93
maanova	71
Maaslin2	921
maaslin3	30
Macarron	131
macat	74
maCorrPlot	130
MACPET	18
MACSQuantifyR	90
MACSr	132
maDB	24
made4	302
MADSEQ	114
maftools	2523
MAGAR	107
MAGeCKFlute	325
magpie	88
magrene	98
MAI	104
maigesPack	78
MAIT	197
makecdfenv	218
makePlatformDesign	10
MANOR	153
manta	43
MantelCorr	120
MAPFX	85
mAPKL	42
maPredictDSC	123
mapscape	94
mariner	91
marr	102
marray	1700
martini	112
maser	160
maSigPro	350
maskBAD	134
MassArray	120
massiR	134
MassSpecWavelet	1697
MAST	2064
mastR	187
matchBox	113
matchprobes	13
MatrixGenerics	42243
MatrixQCvis	196
MatrixRider	114
matter	249
MaxContrastProjection	15
MBAmethyl	104
MBASED	128
MBCB	132
MBECS	111
mbkmeans	369
mbOmic	9
mBPCR	139
MBQN	102
mbQTL	82
MBttest	114
mcaGUI	47
MCbiclust	120
MCRestimate	50
mCSEA	141
mdgsa	34
mdp	112
mdqc	142
MDTS	100
MEAL	147
MeasurementError.cor	127
MEAT	108
MEB	103
MEDIPS	184
MEDME	131
megadepth	178
MEIGOR	139
Melissa	109
memes	253
MergeMaid	53
Mergeomics	126
MeSHDbi	227
meshes	188
meshr	154
MeSHSim	17
MesKit	128
messina	124
metaArray	54
Metab	133
metabCombiner	156
metabinR	88
MetaboAnnotation	279
MetaboCoreUtils	1746
MetaboDynamics	23
metabolomicsWorkbenchR	124
metabomxtr	120
MetaboSignal	156
metaCCA	137
MetaCyto	119
metagene	50
metagene2	127
metagenomeFeatures	31
metagenomeSeq	1552
metahdep	130
metaMS	223
MetaNeighbor	149
MetaPhOR	104
metapod	4666
metapone	100
metaSeq	139
metaseqR	38
metaseqR2	121
metavizr	25
MetaVolcanoR	50
metaX	14
MetCirc	127
MethCP	17
methimpute	115
methInheritSim	116
methodical	67
MethPed	117
MethReg	94
methrix	134
MethTargetedNGS	122
methVisual	42
methyAnalysis	48
MethylAid	147
methylCC	115
methylclock	200
methylGSA	166
methyLImp2	92
methylInheritance	115
methylKit	671
MethylMix	161
methylMnM	132
methylPipe	142
methylscaper	133
MethylSeekR	205
methylSig	119
methylumi	1474
methyvim	15
MetID	113
MetMashR	40
MetNet	117
mfa	142
Mfuzz	1395
MGFM	126
MGFR	112
MGnifyR	116
mgsa	170
mia	1412
miaDash	9
miaSim	119
miaViz	321
MiChip	131
microbiome	1833
microbiomeDASim	98
microbiomeExplorer	118
microbiomeMarker	387
MicrobiomeProfiler	160
MicrobiotaProcess	498
microRNA	234
microSTASIS	95
MICSQTL	86
midasHLA	98
MIGSA	25
miloR	466
mimager	108
MIMOSA	45
mina	88
MineICA	141
minet	670
minfi	2250
MinimumDistance	154
MiPP	147
miQC	156
MIRA	114
MiRaGE	143
miRBaseConverter	176
miRcomp	131
mirIntegrator	126
MIRit	93
miRLAB	132
miRmine	51
miRNAmeConverter	121
miRNApath	128
miRNAtap	191
miRSM	110
miRsponge	9
miRspongeR	99
Mirsynergy	32
mirTarRnaSeq	110
missMethyl	1099
missRows	109
mist	11
mistyR	157
mitch	105
mitoClone2	114
mitology	7
mitoODE	32
mixOmics	2837
MLInterfaces	403
mlm4omics	5
MLP	180
MLSeq	176
MMAPPR2	24
MMDiff	29
MMDiff2	119
mmgmos	4
mmnet	27
MmPalateMiRNA	43
MMUPHin	199
mnem	123
moanin	208
mobileRNA	79
MobilityTransformR	59
MODA	113
ModCon	90
Modstrings	126
MOFA	11
MOFA2	589
MOGAMUN	97
mogsa	271
MoleculeExperiment	113
MOMA	109
monaLisa	198
monocle	3300
Moonlight2R	86
MoonlightR	131
MoPS	28
mosaics	223
mosbi	100
MOSClip	47
mosdef	216
MOSim	120
Motif2Site	100
motifbreakR	196
motifcounter	110
MotifDb	578
motifmatchr	1282
MotifPeeker	28
motifRG	41
motifStack	636
motifTestR	101
MotIV	57
MouseFM	191
MPAC	60
MPFE	107
mpra	129
MPRAnalyze	121
MQmetrics	16
mQTL.NMR	30
msa	1916
MSA2dist	134
MsBackendMassbank	111
MsBackendMetaboLights	55
MsBackendMgf	473
MsBackendMsp	383
MsBackendRawFileReader	102
MsBackendSql	107
MsCoreUtils	3468
MsDataHub	127
MSEADbi	5
MsExperiment	1315
MsFeatures	1357
msgbsR	106
MSGFgui	37
MSGFplus	34
msImpute	240
mslp	83
msmsEDA	270
msmsTests	271
MSnbase	3007
MSnID	319
mspms	29
MSPrep	185
msPurity	128
msqrob2	199
MsQuality	96
MSstats	511
MSstatsBig	87
MSstatsBioNet	19
MSstatsConvert	433
MSstatsLiP	117
MSstatsLOBD	99
MSstatsPTM	202
MSstatsQC	119
MSstatsQCgui	100
MSstatsSampleSize	25
MSstatsShiny	135
MSstatsTMT	269
MSstatsTMTPTM	5
MTseeker	6
MuData	113
Mulcom	144
MultiAssayExperiment	6222
MultiBaC	122
multiClust	131
multicrispr	102
MultiDataSet	1157
multiGSEA	174
multiHiCcompare	158
MultiMed	122
multiMiR	334
MultimodalExperiment	87
multiOmicsViz	45
MultiRNAflow	105
multiscan	135
multiSight	15
multistateQTL	77
multiWGCNA	131
multtest	11783
mumosa	113
MungeSumstats	875
muscat	545
muscle	393
musicatk	122
MutationalPatterns	308
MVCClass	162
mvGST	27
MWASTools	160
mygene	356
myvariant	137
mzID	2921
mzR	3139
NADfinder	114
NanoMethViz	133
NanoStringDiff	148
NanoStringNCTools	374
NanoStringQCPro	47
nanotatoR	27
NanoTube	128
NarrowPeaks	39
NBAMSeq	196
NBSplice	20
ncdfFlow	1026
ncGTW	178
NCIgraph	102
ncRNAtools	105
ndexr	116
neaGUI	22
nearBynding	98
Nebulosa	1230
NeighborNet	33
nem	63
nempi	97
NetActivity	93
netbenchmark	26
netbiov	57
netboost	101
netboxr	18
netDx	46
nethet	137
netOmics	22
NetPathMiner	120
netprioR	100
netReg	16
netresponse	145
NetSAM	162
netSmooth	124
networkBMA	50
netZooR	90
NeuCA	50
NewWave	113
NGScopy	28
ngsReports	128
nipalsMCIA	100
nnNorm	147
nnSVG	193
NOISeq	587
nondetects	62
NoRCE	105
normalize450K	110
NormalyzerDE	216
NormqPCR	212
normr	177
NPARC	123
npGSEA	127
NTW	123
nucleoSim	115
nucleR	162
nuCpos	104
nudge	42
nullranges	197
NuPoP	143
NxtIRFcore	14
occugene	124
OCplus	162
octad	95
ODER	10
odseq	112
OGRE	97
OGSA	27
oligo	1886
oligoClasses	1597
OLIN	158
OLINgui	141
omada	90
OmaDB	228
omicade4	207
OmicCircos	238
omicplotR	114
omicRexposome	119
OmicsLonDA	26
OmicsMarkeR	27
OmicsMLRepoR	44
OMICsPCA	112
omicsPrint	122
omicsViewer	100
Omixer	105
OmnipathR	783
ompBAM	140
omXplore	53
Onassis	22
oncomix	113
oncoscanR	104
OncoScore	116
OncoSimulR	132
oneChannelGUI	54
oneSENSE	32
onlineFDR	88
ontoCAT	36
ontoProc	235
ontoTools	23
openCyto	612
openPrimeR	174
openPrimeRui	56
OpenStats	89
OperaMate	17
oposSOM	163
oppar	119
oppti	96
optimalFlow	106
OPWeight	109
OrderedList	149
ORFhunteR	102
ORFik	193
OrganismDbi	2575
Organism.dplyr	392
orthogene	369
orthos	100
OSAT	153
Oscope	134
OSTA.data	12
OTUbase	132
OutlierD	50
OUTRIDER	207
OutSplice	86
OVESEG	120
PAA	139
packFinder	114
padma	110
PADOG	312
pageRank	87
PAIRADISE	144
paircompviz	124
pairedGSEA	77
pairkat	128
pairseqsim	3
pamr	23
pandaR	165
panelcn.mops	116
PAnnBuilder	45
PanomiR	100
panp	164
PANR	134
PanViz	48
PanVizGenerator	25
PAPi	35
pareg	54
parglms	119
parody	148
partCNV	83
PAST	104
Path2PPI	129
pathifier	140
pathlinkR	116
pathMED	6
PathNet	137
PathoStat	190
pathprint	14
pathRender	143
pathVar	38
pathview	4566
pathwayPCA	126
PathwaySplice	14
PatientGeneSets	6
paxtoolsr	108
Pbase	30
pbcmc	10
pcaExplorer	366
pcaGoPromoter	34
pcaMethods	5028
PCAN	124
PCAtools	1217
pcot2	63
PCpheno	49
pcxn	48
PDATK	175
pdInfoBuilder	181
pdmclass	47
PeacoQC	260
peakPantheR	104
PECA	137
peco	105
Pedixplorer	81
pengls	88
PepSetTest	56
PepsNMR	146
pepStat	122
pepXMLTab	125
PERFect	28
periodicDNA	102
perturbatr	15
pfamAnalyzeR	267
PFP	14
PGA	30
pgca	92
PGSEA	86
pgUtils	14
pgxRpi	88
phantasus	222
phantasusLite	102
PharmacoGx	244
phemd	26
phenoDist	31
PhenoGeneRanker	81
phenomis	103
phenopath	138
phenoTest	156
PhenStat	128
philr	195
PhIPData	111
phosphonormalizer	96
PhosR	167
PhyloProfile	115
phyloseq	5501
Pi	45
piano	358
PICB	23
pickgene	121
PICS	153
Pigengene	135
PING	140
pint	36
pipeComp	107
pipeFrame	143
PIPETS	81
Pirat	56
PIUMA	84
pkgDepTools	68
planet	220
planttfhunter	113
plasmut	83
plateCore	44
plethy	48
plgem	164
plier	181
PloGO2	31
plotgardener	230
plotGrouper	98
PLPE	136
plrs	35
PLSDAbatch	103
plw	52
plyinteractions	97
plyranges	1073
plyxp	45
pmm	114
pmp	156
PoDCall	79
podkat	135
poem	15
pogos	143
polyester	122
Polyfit	33
PolySTest	55
Polytect	29
POMA	218
POST	16
PoTRA	14
PowerExplorer	14
powerTCR	306
POWSC	108
ppcseq	104
PPInfer	220
ppiStats	64
pqsfinder	165
prada	60
pram	113
prebs	120
preciseTAD	106
PrecisionTrialDrawer	18
PREDA	146
predictionet	45
preprocessCore	14353
primirTSS	100
PrInCE	109
Prize	25
proActiv	117
proBAMr	121
proBatch	29
PROcess	160
procoil	138
ProCoNA	30
proDA	255
proFIA	28
profileplyr	257
profileScoreDist	107
progeny	479
projectR	125
pRoloc	272
pRolocGUI	161
PROMISE	135
PRONE	51
PROPER	156
PROPS	106
Prostar	141
prot2D	25
proteasy	23
proteinProfiles	109
ProteoDisco	96
ProteomicsAnnotationHubData	27
ProteoMM	125
proteoQC	32
protGear	102
ProtGenerics	11243
PSEA	53
psichomics	114
PSICQUIC	43
PSMatch	2178
psygenet2r	92
ptairMS	90
PubScore	13
pulsedSilac	14
puma	172
PureCN	210
pvac	135
pvca	289
Pviz	124
pwalign	6295
PWMEnrich	224
pwOmics	157
pwrEWAS	24
qckitfastq	118
qcmetrics	139
QDNAseq	314
QFeatures	2636
qmtools	102
qpcrNorm	147
qpgraph	199
qPLEXanalyzer	108
qrqc	50
QRscore	6
qsea	121
qsmooth	185
QSutils	178
qsvaR	189
QTLExperiment	92
Qtlizer	103
QUALIFIER	39
quantiseqr	572
quantro	248
quantsmooth	654
QuartPAC	77
QuasR	350
QuaternaryProd	118
QUBIC	166
qusage	409
qvalue	19255
R3CPET	108
r3Cseq	152
R453Plus1Toolbox	153
R4RNA	652
RadioGx	106
raer	84
RaggedExperiment	757
RAIDS	87
rain	159
rama	49
RamiGO	31
ramr	102
ramwas	138
RandomWalkRestartMH	45
randPack	129
randRotation	94
RankProd	279
RAREsim	86
RareVariantVis	127
Rariant	41
Rarr	192
rawDiag	90
rawrr	200
RbcBook1	215
Rbec	94
RBGL	8969
RBioFormats	262
RBioinf	151
rBiopaxParser	195
rBLAST	196
RBM	125
Rbowtie	429
Rbowtie2	266
rbsurv	153
Rbwa	99
Rcade	53
RCAS	148
RCASPAR	113
rcellminer	152
rCGH	143
Rchemcpp	31
RchyOptimyx	41
RcisTarget	1204
RCM	116
Rcollectl	55
Rcpi	175
RCSL	105
Rcwl	100
RcwlPipelines	105
RCX	107
RCy3	791
RCyjs	131
RCytoscape	33
RDAVIDWebService	61
Rdbi	18
RdbiPgSQL	13
rDGIdb	76
Rdisop	451
RDRToolbox	186
ReactomeContentService4R	91
ReactomeGraph4R	46
ReactomeGSA	259
ReactomePA	2860
readat	16
ReadqPCR	233
reb	51
REBET	105
rebook	178
receptLoss	95
reconsi	91
recount	372
recount3	301
recountmethylation	118
recoup	119
RedeR	300
RedisParam	92
REDseq	150
ReducedExperiment	26
RefNet	31
RefPlus	81
RegEnrich	113
regionalpcs	98
RegionalST	78
regioneR	1717
regioneReloaded	99
regionReport	180
regsplice	107
regutools	109
REMP	114
Repitools	297
ReportingTools	540
reposTools	2
RepViz	102
ReQON	58
ResidualMatrix	3802
RESOLVE	88
Resourcerer	22
restfulSE	121
retrofit	87
ReUseData	87
rexposome	139
rfaRm	98
Rfastp	188
RFLOMICS	9
rflowcyt	19
rfPred	132
rGADEM	370
RGalaxy	43
rGenomeTracks	100
Rgin	18
RGMQL	45
RgnTX	93
rgoslin	154
RGraph2js	118
Rgraphviz	9032
rGREAT	626
RGSEA	139
rgsepd	116
rhdf5	21017
rhdf5client	146
rhdf5filters	20613
Rhdf5lib	22946
rhinotypeR	46
Rhisat2	212
Rhtslib	23738
rHVDM	49
RiboCrypt	93
RiboDiPA	105
RiboProfiling	150
ribor	110
riboSeqR	140
ribosomeProfilingQC	123
rifi	93
rifiComparative	89
Rigraphlib	32
rigvf	10
RImmPort	95
Ringo	142
Rintact	9
RIPAT	27
RIPSeeker	48
Risa	190
RITAN	117
RIVER	116
RJMCMCNucleosomes	115
RLassoCox	101
RLMM	133
RLSeq	20
RMAGEML	11
Rmagpie	145
RMAPPER	15
RMassBank	174
rMAT	44
rmelting	108
RmiR	46
Rmmquant	110
rmspc	88
RNAAgeCalc	119
RNAdecay	97
rnaEditr	109
RNAinteract	75
RNAither	55
RNAmodR	103
RNAmodR.AlkAnilineSeq	100
RNAmodR.ML	104
RNAmodR.RiboMethSeq	106
RNAprobR	30
RNAsense	97
rnaseqcomp	133
RNAseqCovarImpute	85
rnaSeqMap	44
RNASeqPower	225
RNASeqR	15
RnaSeqSampleSize	150
RnBeads	306
Rnits	124
roar	133
roastgsa	90
ROC	1101
ROCpAI	91
RolDE	106
Roleswitch	37
Rolexa	30
rols	415
ROntoTools	190
ropls	1147
ROSeq	115
ROTS	246
RPA	133
rprimer	118
RProtoBufLib	2334
RpsiXML	61
rpx	337
Rqc	309
rqt	85
rqubic	149
rRDP	133
Rredland	9
RRHO	147
rrvgo	539
Rsamtools	23411
rsbml	174
rScudo	105
rsemmed	94
RSeqAn	138
rSFFreader	33
RSNPper	11
Rsubread	2089
RSVSim	131
rSWeeP	105
rTANDEM	40
RTCA	136
RTCGA	469
RTCGAToolbox	474
RTN	213
RTNduals	117
RTNsurvival	112
RTools4TB	7
RTopper	143
Rtpca	116
rtracklayer	20143
Rtreemix	148
rTRM	172
rTRMui	125
RUCova	8
runibic	115
Ruuid	18
RUVcorr	125
RUVnormalize	132
RUVSeq	860
Rvisdiff	88
RVS	105
RWebServices	24
rWikiPathways	375
S4Arrays	40396
S4Vectors	55762
safe	606
SAGElyzer	7
sagenhaft	136
SAGx	58
SAIGEgds	150
samExploreR	14
sampleClassifier	112
SamSPECTRAL	176
sangeranalyseR	243
sangerseqR	776
SANTA	117
sapFinder	36
saps	15
SARC	86
sarks	98
saseR	71
satuRn	295
savR	36
SBGNview	198
sbgr	11
SBMLR	142
SC3	356
Scale4C	128
ScaledMatrix	12444
scAlign	18
scanMiR	114
scanMiRApp	98
scAnnotatR	208
SCAN.UPC	148
SCANVIS	113
SCArray	114
SCArray.sat	96
SCATE	18
scater	7107
scatterHatch	94
scBFA	108
SCBN	112
scBubbletree	103
scCB2	102
scClassifR	6
scClassify	157
sccomp	141
scDataviz	121
scDblFinder	1708
scDD	173
scDDboost	96
scde	425
scDesign3	114
scDiagnostics	53
scDotPlot	78
scds	475
SCFA	98
scFeatureFilter	110
scFeatures	94
scfind	13
scGPS	133
schex	164
scHiCcompare	8
scHOT	112
scider	91
scifer	97
ScISI	59
scMAGeCK	12
scmap	257
scMerge	480
scMET	93
scmeth	108
scMitoMut	82
scMultiSim	89
SCnorm	157
scone	152
Sconify	110
SCOPE	116
scoreInvHap	113
scoup	45
scp	250
scPCA	134
scPipe	137
scQTLtools	23
scran	4645
scrapper	80
scReClassify	113
scRecover	112
screenCounter	92
ScreenR	90
scRepertoire	664
scRNAseqApp	95
scruff	113
scry	303
scShapes	92
scsR	34
scTensor	108
scTGIF	205
scTHI	96
scTreeViz	101
scuttle	9098
scviR	84
SDAMS	114
seahtrue	55
sechm	214
segmenter	106
segmentSeq	149
selectKSigs	96
SELEX	136
SemDist	127
semisup	107
SemSim	5
SEPA	21
SEPIRA	31
seq2pathway	222
seqArchR	94
seqArchRplus	86
SeqArray	896
seqbias	56
seqCAT	119
seqCNA	57
seqcombo	102
SeqGate	102
SeqGSEA	241
seq.hotSPOT	83
seqLogo	3587
seqPattern	742
seqplots	40
seqsetvis	133
SeqSQC	203
seqTools	160
SeqVarTools	467
SEraster	7
sesame	826
SEtools	210
sevenbridges	127
sevenC	109
SGCP	166
SGSeq	315
SharedObject	132
shinyDSP	8
shinyepico	102
shiny.gosling	94
shinyMethyl	165
shinyTANDEM	33
ShortRead	5993
SIAMCAT	173
SICtools	114
sigaR	37
SigCheck	114
sigFeature	311
SigFuge	134
siggenes	3096
sights	123
signatureSearch	198
signeR	128
signet	10
signifinder	74
sigPathway	66
SigsPack	96
sigsquared	122
SIM	144
SIMAT	128
SimBindProfiles	55
SimBu	191
SIMD	102
SimFFPE	96
similaRpeak	131
SIMLR	197
simona	346
simPIC	80
simpleaffy	106
simpleSeg	113
simplifyEnrichment	1015
simulatorAPMS	13
simulatorZ	32
sincell	132
single	40
SingleCellAlleleExperiment	95
SingleCellExperiment	16257
SingleCellSignalR	240
singleCellTK	344
SingleMoleculeFootprinting	103
SingleR	4339
singscore	1514
SiPSiC	94
SISPA	41
sitadela	95
Site2Target	9
sitePath	112
sizepower	137
SJava	20
sketchR	95
skewr	119
slalom	145
SLGI	61
slingshot	1571
slinky	19
SLqPCR	140
SMAD	99
SMAP	67
smartid	93
SMITE	108
smoothclust	90
smoppix	23
SNAGEE	125
snapCGH	70
snapcount	107
snifter	171
snm	167
SNPchip	53
SNPediaR	101
SNPhood	127
snpMatrix	15
SNPRelate	1715
snpStats	2026
soGGi	372
sojourner	20
SomatiCA	25
SomaticSignatures	193
SOMNiBUS	84
sosta	28
SpaceMarkers	81
SpacePAC	98
spacexr	14
spade	28
Spaniel	124
SpaNorm	53
sparrow	390
SparseArray	42526
sparseDOSSA	33
sparseMatrixStats	15413
sparsenetgls	98
SparseSignatures	117
spaSim	100
SpatialCPie	131
spatialDE	139
SpatialDecon	232
SpatialExperiment	5024
SpatialExperimentIO	31
spatialFDA	43
SpatialFeatureExperiment	230
spatialHeatmap	236
SpatialOmicsOverlay	104
spatialSimGP	43
spatzie	89
speckle	267
specL	131
SpeCond	153
Spectra	1858
SpectralTAD	127
SpectraQL	50
SPEM	148
SPIA	573
SPIAT	162
spicyR	203
SpidermiR	33
spikeLI	121
spiky	94
spillR	85
spkTools	137
splatter	452
splicegear	49
spliceR	30
spliceSites	33
SpliceWiz	161
SplicingFactory	94
SplicingGraphs	157
SplineDV	32
splineTCDiffExpr	1
splineTimeR	131
SPLINTER	99
splots	188
SPONGE	109
spoon	83
SpotClean	132
SPOTlight	302
spotSegmentation	41
SpotSweeper	86
spqn	102
SPsimSeq	194
SQLDataFrame	106
SQUADD	48
squallms	56
sRACIPE	119
SRAdb	462
sRAP	43
SRGnet	16
srnadiff	91
sscore	63
sscu	111
sSeq	192
ssize	165
sSNAPPY	191
SSPA	113
ssPATHS	104
ssrch	104
ssviz	134
StabMap	46
stageR	222
stam	9
STAN	43
standR	172
staRank	74
StarBioTrek	34
Starr	48
STATegRa	135
Statial	116
statTarget	151
STdeconvolve	138
stepNorm	141
stepwiseCM	35
stJoincount	104
strandCheckR	111
Streamer	136
STRINGdb	1404
STROMA4	31
struct	171
Structstrings	121
structToolbox	162
StructuralVariantAnnotation	215
SubCellBarCode	114
subSeq	139
SUITOR	87
SummarizedBenchmark	34
SummarizedExperiment	40868
Summix	96
supersigs	188
supraHex	346
surfaltr	99
SurfR	75
survClust	62
survcomp	1373
survtype	105
Sushi	74
sva	7365
svaNUMT	91
SVAPLSseq	12
svaRetro	96
SVM2CRM	25
SVMDO	101
SVP	12
SWATH2stats	122
SwathXtend	111
swfdr	122
SwimR	30
switchBox	144
switchde	112
synapsis	93
synapter	183
synergyfinder	260
SynExtend	110
synlet	121
SynMut	102
syntenet	138
systemPipeR	1183
systemPipeShiny	115
systemPipeTools	101
tadar	90
TADCompare	126
tanggle	121
TAPseq	114
target	113
TargetDecoy	113
TargetScore	139
TargetSearch	143
TarSeqQC	39
TaxSEA	7
TBSignatureProfiler	99
TCC	269
TCGAbiolinks	4745
TCGAbiolinksGUI	34
TCGAutils	652
TCseq	587
TDARACNE	47
TDbasedUFE	93
TDbasedUFEadv	94
TEKRABber	185
TENET	9
TENxIO	110
tenXplore	95
TEQC	151
terapadog	15
ternarynet	121
terraTCGAdata	101
TFARM	105
TFBSTools	3255
TFEA.ChIP	141
TFHAZ	106
TFutils	127
tidybulk	343
tidyCoverage	82
tidyFlowCore	63
tidyomics	106
tidysbml	50
tidySingleCellExperiment	246
tidySpatialExperiment	96
tidySummarizedExperiment	349
tidytof	58
tigre	151
TileDBArray	126
tilingArray	171
timecourse	159
timeOmics	136
timescape	116
TimeSeriesExperiment	21
TimiRGeN	22
TIN	126
TissueEnrich	263
TitanCNA	149
tkWidgets	1403
tLOH	94
TMixClust	130
TMSig	47
TNBC.CMS	29
TnT	89
TOAST	447
tofsims	21
tomoda	108
tomoseqr	95
TOP	85
ToPASeq	34
topconfects	191
topdownr	115
topGO	2635
ToxicoGx	111
TPP	169
TPP2D	108
tpSVG	81
tracktables	214
trackViewer	610
tradeSeq	577
TrajectoryGeometry	85
TrajectoryUtils	1888
transcriptogramer	115
transcriptR	125
transformGamPoi	113
transite	116
tRanslatome	219
transmogR	80
transomics2cytoscape	117
TransView	101
TraRe	12
traseR	131
Travel	4
traviz	65
TreeAndLeaf	160
treeclimbR	82
treeio	22424
treekoR	113
TreeSummarizedExperiment	2129
TREG	98
trena	30
TReNA	3
Trendy	112
TRESS	104
tricycle	258
TrIdent	25
triform	42
trigger	142
trio	170
triplex	145
tripr	97
tRNA	118
tRNAdbImport	110
tRNAscanImport	110
TRONCO	141
TSAR	80
TSCAN	596
tscR	17
tspair	51
TSRchitect	23
TSSi	36
ttgsea	94
TTMap	116
TurboNorm	137
TVTB	110
tweeDEseq	184
twilight	165
twoddpcr	115
txcutr	93
txdbmaker	4129
tximeta	996
tximport	3464
TxRegInfra	13
TypeInfo	93
UCell	1582
UCSC.utils	37967
Ularcirc	109
UMI4Cats	99
uncoverappLib	99
UNDO	129
unifiedWMWqPCR	94
UniProt.ws	486
Uniquorn	116
universalmotif	938
updateObject	93
UPDhmm	74
uSORT	119
VAExprs	92
VanillaICE	244
VarCon	99
variancePartition	917
VariantAnnotation	11186
VariantExperiment	82
VariantFiltering	136
VariantTools	172
vasp	6
VaSP	103
vbmp	170
VCFArray	104
VDJdive	103
Vega	34
VegaMC	134
velociraptor	186
veloviz	92
VennDetail	298
VERSO	93
vidger	164
viper	726
virtualArray	13
ViSEAGO	147
VisiumIO	102
visiumStitched	28
vissE	151
Voyager	224
VplotR	116
vsclust	97
vsn	4838
vtpnet	134
vulcan	103
waddR	87
wateRmelon	862
wavClusteR	126
waveTiling	39
weaver	140
webbioc	144
weitrix	110
widgetInvoke	6
widgetTools	1398
wiggleplotr	181
wpm	114
wppi	83
Wrench	1550
XAItest	11
XBSeq	31
xCell2	27
XCIR	10
xcms	1561
xcore	95
XDE	157
XeniumIO	21
xenLite	50
Xeva	165
XINA	109
xmapbridge	125
xmapcore	9
XNAString	103
xps	45
XVector	50265
y2hStat	3
yamss	116
YAPSA	136
yaqcaffy	46
yarn	145
zellkonverter	1651
zenith	142
zFPKM	165
zinbwave	798
zitools	49
zlibbioc	52371
ZygosityPredictor	84