Package	Download_score
a4	396
a4Base	468
a4Classif	366
a4Core	410
a4Preproc	536
a4Reporting	302
ABAEnrichment	148
ABarray	458
abseqR	297
ABSSeq	438
acde	369
ACE	327
aCGH	653
ACME	603
ADaCGH2	432
ADAM	294
ADAMgui	248
ADAPT	110
adaptest	45
adductomicsR	247
ADImpute	299
adSplit	499
adverSCarial	185
Aerith	77
AffiXcan	287
affxparser	2564
affy	9443
affycomp	496
AffyCompatible	217
affyContam	398
affycoretools	758
AffyExpress	195
affyILM	394
affyio	9642
affylmGUI	534
affyPara	225
affypdnn	209
affyPLM	1631
affyQCReport	183
AffyRNADegradation	323
AffyTiling	106
AGDEX	387
aggregateBioVar	303
Agi4x44PreProcess	70
agilp	282
AgiMicroRna	486
AHMassBank	182
AIMS	759
airpart	249
alabaster	202
alabaster.base	5339
alabaster.bumpy	199
alabaster.files	195
alabaster.mae	211
alabaster.matrix	4950
alabaster.ranges	4898
alabaster.sce	1481
alabaster.schemas	4777
alabaster.se	4871
alabaster.sfe	105
alabaster.spatial	226
alabaster.string	212
alabaster.vcf	202
ALDEx2	1832
alevinQC	303
AllelicImbalance	466
AlphaBeta	283
AlphaMissenseR	218
alpine	234
ALPS	39
AlpsNMR	334
alsace	114
altcdfenvs	507
AMARETTO	322
AMOUNTAIN	284
amplican	445
ampliQueso	112
AnalysisPageServer	71
anamiR	63
anansi	122
Anaquin	299
ANCOMBC	2264
AneuFinder	346
ANF	297
anglemania	141
animalcules	429
annaffy	637
AnnBuilder	54
anndataR	928
annmap	373
annoLinker	68
annotate	21143
AnnotationDbi	45112
AnnotationFilter	12515
AnnotationForge	2435
AnnotationFuncs	141
AnnotationHub	14588
AnnotationHubData	912
annotationTools	430
annotatr	947
anota	366
anota2seq	399
antiProfiles	277
AnVIL	904
AnVILAz	163
AnVILBase	663
AnVILBilling	209
AnVILGCP	184
AnVILPublish	210
AnVILVRS	16
AnVILWorkflow	160
APAlyzer	259
apComplex	467
apeglm	6344
APL	242
applera	30
appreci8R	334
aroma.light	2036
ArrayExpress	719
ArrayExpressHTS	148
arrayMagic	111
arrayMvout	458
arrayQCplot	18
arrayQuality	473
arrayQualityMetrics	788
ArrayTools	218
ArrayTV	150
ARRmNormalization	284
artMS	335
ASAFE	222
ASEB	277
ASGSCA	292
ASICS	417
asmn	24
ASpediaFI	91
ASpli	503
AssessORF	320
ASSET	358
ASSIGN	428
assorthead	17663
ASURAT	289
asuri	88
ATACCoGAPS	65
atacInferCnv	41
ATACseqQC	688
ATACseqTFEA	266
atena	267
AtlasRDF	49
atSNP	334
attract	483
AUCell	3945
augere.core	17
augere.de	20
augere.gsea	18
augere.screen	17
augere.solo	18
autonomics	311
Autotuner	47
AWAggregator	118
AWFisher	266
awst	248
BaalChIP	331
BAC	181
bacon	458
BADER	294
BadRegionFinder	339
BAGS	305
ballgown	1920
bambu	555
BamScale	13
bamsignals	1575
BANDITS	309
bandle	275
Banksy	643
banocc	224
barbieQ	156
barcodetrackR	154
barmixR	1
basecallQC	286
BaseSpaceR	323
Basic4Cseq	388
BASiCS	547
BASiCStan	196
BasicSTARRseq	308
basilisk	4934
basilisk.utils	3309
batchCorr	147
BatChef	36
batchelor	5075
BatchQC	393
BatchSVG	160
Battlefield	56
BayesKnockdown	258
BayesPeak	143
BayesSpace	762
bayNorm	332
baySeq	816
BBCAnalyzer	381
BCRANK	535
bcSeq	251
BDMMAcorrect	109
beachmat	20411
beachmat.hdf5	316
beachmat.tiledb	131
beadarray	1016
beadarraySNP	280
BeadDataPackR	782
BeadExplorer	26
BEARscc	157
BEAT	452
BEclear	305
bedbaser	187
beer	239
benchdamic	204
BenchHub	11
BERT	171
betaHMM	184
betr	133
betterChromVAR	56
bettr	184
BG2	184
bgafun	176
BgeeCall	324
BgeeDB	366
BGmix	190
bgx	327
BHC	199
BicARE	443
BiFET	250
BiGGR	205
bigmelon	384
bigmemoryExtras	100
bigPint	129
bim	25
BindingSiteFinder	299
bioassayR	377
Biobase	60882
biobroom	515
biobtreeR	203
bioCancer	361
BioCartaImage	173
BiocAzul	31
BiocBaseUtils	13330
BiocBook	215
BiocBuildReporter	50
BiocCaseStudies	226
BiocCheck	2596
biocDatasets	13
BiocDockerManager	63
BiocFHIR	218
BiocFileCache	29548
BiocGenerics	71350
Bioc.gff	122
biocGraph	500
BiocHail	133
BiocHubsShiny	212
BiocInstaller	220
BiocIO	21851
BiocMaintainerApp	47
biocmake	4306
BiocNeighbors	14543
BiocOncoTK	194
BioCor	363
BiocParallel	60097
BiocPkgDash	53
BiocPkgTools	514
biocroxytest	154
BiocSet	631
BiocSingular	16814
BiocSklearn	293
BiocStyle	7947
biocthis	793
BiocVersion	73350
biocViews	5450
BiocWorkflowTools	336
biodb	383
biodbChebi	201
biodbExpasy	63
biodbHmdb	132
biodbKegg	91
biodbLipidmaps	66
biodbMirbase	46
biodbNcbi	124
biodbNci	118
biodbUniprot	120
bioDist	541
BioGA	150
biomaRt	24266
BioMedR	20
biomformat	7289
BioMM	102
BioMVCClass	381
biomvRCNS	383
BioNAR	240
BioNERO	417
BioNet	678
BioNetStat	125
BioQC	431
BioSeqClass	151
biosigner	344
Biostrings	55189
biosvd	113
BioTIP	282
biotmle	321
biovizBase	6283
BiRewire	350
birta	142
birte	92
biscuiteer	343
BiSeq	490
BitSeq	287
blacksheepr	274
blase	129
blima	360
BLMA	390
BloodGen3Module	250
bluster	9001
bnbc	354
bnem	270
BOBaFIT	229
borealis	241
BPRMeth	334
BRAIN	465
brainflowprobes	110
brainImageR	20
BrainSABER	74
BrainStars	138
branchpointer	351
breakpointR	331
BreastSubtypeR	170
brendaDb	275
BREW3R.r	183
BRGenomics	221
bridge	214
BridgeDbR	337
broadSeq	144
BrowserViz	376
BrowserVizDemo	24
BSgenome	13871
BSgenomeForge	349
bsseq	1988
BubbleTree	284
BufferedMatrix	310
BufferedMatrixMethods	311
bugsigdbr	579
BulkSignalR	281
BUMHMM	313
bumphunter	3190
BumpyMatrix	867
BUS	356
BUScorrect	294
BUSpaRse	475
BUSseq	290
CaDrA	175
CAEN	218
CAFE	487
CAGEfightR	489
cageminer	256
CAGEr	601
CALIB	174
CalibraCurve	122
calm	195
CAMERA	937
CAMTHC	51
CaMutQC	182
canceR	350
cancerclass	610
CancerInSilico	119
CancerMutationAnalysis	162
CancerSubtypes	212
CAnD	135
caOmicsV	190
cardelino	272
Cardinal	665
CardinalIO	330
CARDspa	254
carnation	60
CARNIVAL	381
casper	436
CATALYST	796
Category	1793
categoryCompare	471
CatsCradle	181
CausalR	305
cbaf	303
CBEA	92
cBioPortalData	811
CBN2Path	107
CBNplot	273
cbpManager	251
CCAFE	167
ccfindR	286
ccImpute	227
ccmap	208
CCPlotR	228
CCPROMISE	283
ccrepe	365
CDI	217
celaref	352
celda	1456
CellaRepertorium	118
CellBarcode	288
cellbaseR	355
CellBench	405
cellGrowth	130
cellHTS	202
cellHTS2	388
CelliD	405
cellity	346
CellMapper	300
CellMentor	68
cellmig	141
cellmigRation	221
CellMixS	448
cellNexus	9
CellNOptR	486
cellscape	212
CellScore	165
CellTrails	335
cellTree	220
cellxgenedp	253
CEMiTool	411
censcyt	250
Cepo	379
ceRNAnetsim	214
CeTF	335
CexoR	425
CFAssay	230
cfdnakit	249
cfDNAPro	316
cfTools	159
CGEN	290
CGHbase	774
CGHcall	748
cghMCR	453
CGHnormaliter	372
CGHregions	396
CGRphylo2	7
ChAMP	1035
CHARGE	42
charm	182
ChemmineOB	612
ChemmineR	1256
CHETAH	309
chevreulPlot	151
chevreulProcess	168
chevreulShiny	150
ChIC	81
Chicago	365
chihaya	278
chimera	205
chimeraviz	439
ChIPanalyser	354
ChIPComp	348
chipenrich	458
ChIPexoQual	371
ChIPpeakAnno	1364
ChIPQC	596
ChIPseeker	3046
chipseq	967
ChIPseqR	468
ChIPSeqSpike	61
ChIPsim	439
ChIPXpress	324
chopsticks	332
chroGPS	173
Chromatograms	148
chromDraw	282
ChromHeatMap	397
ChromoViz	61
chromPlot	383
ChromSCape	325
chromstaR	323
chromswitch	143
chromVAR	1615
CHRONOS	309
cicero	602
cigarillo	12478
CIMICE	221
CINdex	251
circRNAprofiler	381
CircSeqAlignTk	209
cisPath	170
CiteFuse	319
CLAMP	7
ClassifyR	639
cleanUpdTSeq	471
CleanUpRNAseq	209
cleaver	566
clevRvis	181
clippda	381
clipper	543
cliProfiler	240
cliqueMS	292
Clomial	274
Clonality	180
ClonalSim	41
clonotypeR	128
clst	326
clstutils	316
CluMSID	287
ClustAll	179
clustComp	281
clusterExperiment	662
ClusterFoldSimilarity	189
ClusterGVis	114
ClusterJudge	260
clusterProfiler	27359
clusterSeq	306
ClusterSignificance	268
clusterStab	387
clustifyr	433
ClustIRR	191
clustSIGNAL	160
CMA	459
cmapR	750
CNAnorm	329
CNEr	2131
cn.farms	450
cn.mops	639
CNORdt	294
CNORfeeder	386
CNORfuzzy	362
CNORode	346
CNPBayes	109
CNTools	403
CNVfilteR	295
CNVgears	77
cnvGSA	330
CNViz	207
CNVMetrics	241
CNVPanelizer	370
CNVRanger	354
CNVrd2	401
CNVtools	104
cobindR	144
CoCiteStats	333
COCOA	378
codelink	548
CODEX	444
coexnet	109
CoGAPS	522
cogena	417
cogeqc	273
Cogito	238
coGPS	312
COHCAP	176
cola	530
comapr	208
combi	263
coMET	279
coMethDMR	246
compartmap	161
COMPASS	385
compcodeR	534
CompensAID	68
compEpiTools	414
CompGO	137
ComplexHeatmap	22352
CompoundDb	637
ComPrAn	193
compSPOT	162
conclus	62
concordexR	220
condcomp	15
condiments	344
CONFESS	382
consensus	250
ConsensusClusterPlus	3463
consensusDE	269
consensusOV	339
consensusSeekeR	363
consICA	257
CONSTANd	221
contiBAIT	260
conumee	482
convert	504
copa	395
COPDSexualDimorphism	24
copynumber	357
CopyNumber450k	64
CopyNumberPlots	316
CopywriteR	222
Coralysis	207
coRdon	500
CoRegFlux	36
CoRegNet	212
CoreGx	680
Cormotif	367
CorMut	93
coRNAi	104
corral	279
CORREP	185
coseq	434
CoSIA	201
cosmiq	341
cosmo	96
cosmoGUI	47
cosmosR	324
COSNet	283
COTAN	257
CountClust	113
countsimQC	534
covEB	303
CoverageView	385
covRNA	309
CPSM	162
cpvSNP	373
cqn	591
CrcBiomeScreen	52
CRImage	460
CRISPRball	154
crisprBase	327
crisprBowtie	318
crisprBwa	199
crisprDesign	334
crisprScore	359
CRISPRseek	468
crisprseekplus	152
crisprShiny	161
CrispRVariants	460
crisprVerse	230
crisprViz	331
crlmm	725
CrossICC	25
crossmeta	240
crumblr	154
crupR	166
CSAR	439
csaw	903
csdR	193
CSOA	123
CSSP	134
CSSQ	298
ctc	557
CTdata	214
CTDquerier	453
CTexploreR	198
ctgGEM	51
cTRAP	324
ctsGE	314
CTSV	204
cummeRbund	493
CuratedAtlasQueryR	205
customCMPdb	253
customProDB	390
CVE	64
cyanoFilter	245
cycle	386
cydar	394
cypress	193
CytoDx	267
cytofast	47
cytofkit	84
CyTOFpower	214
cytofQC	177
CytoGLMM	231
cytoKernel	231
cytolib	3212
cytomapper	654
CytoMDS	195
cytoMEM	252
CytoML	977
CytoPipeline	244
CytoPipelineGUI	192
CytoTree	65
cytoviewer	259
dada2	3386
dagLogo	476
daMA	383
DAMEfinder	348
damidBind	85
DaMiRseq	409
Damsel	189
dandelionR	145
DAPAR	430
DaparToolshed	16
dar	200
DART	373
DASC	6
DASiR	71
dasper	84
DAssemble	2
DAVIDQuery	67
daVis	10
DBChIP	164
dbSequence	5
dcanr	459
DCATS	192
dce	172
dcGSA	243
DChIPRep	145
ddCt	435
ddgraph	97
ddPCRclust	291
dearseq	330
debCAM	211
debrowser	425
decemedip	81
DECIPHER	4031
deco	126
DEComplexDisease	117
decompTumor2Sig	284
DeconRNASeq	460
decontam	2359
decontX	670
DeconvoBuddies	179
deconvR	297
decoupleR	2767
DEDS	215
DeeDeeExperiment	150
DeepBlueR	168
DeepPINCS	217
deepSNV	587
DeepTarget	170
DEFormats	567
DegCre	203
DegNorm	295
DEGraph	288
DEGreport	869
DEGseq	517
DelayedArray	53651
DelayedDataFrame	317
DelayedMatrixStats	18364
DelayedRandomArray	224
DelayedTensor	240
DELocal	188
deltaCaptureC	237
deltaGseg	278
DeMAND	224
DeMixT	333
demuxmix	251
demuxSNP	225
DenoIST	64
densvis	772
DEP	938
DepecheR	270
DepInfeR	213
DeProViR	27
DEqMS	609
derfinder	946
derfinderHelper	785
derfinderPlot	497
DEScan2	388
DESeq	614
DESeq2	30566
DEsingle	420
DESpace	295
destiny	1409
DEsubs	371
DEWSeq	336
DExMA	270
DEXSeq	2144
dexus	139
DFP	385
DFplyr	184
DIAlignR	113
DiffBind	1659
diffcoexp	294
diffcyt	670
DifferentialRegulation	223
diffGeneAnalysis	283
diffHic	528
DiffLogo	305
diffloop	253
diffuStats	291
diffUTR	280
diggit	304
Dino	260
dinoR	187
Director	110
dir.expiry	9899
DirichletMultinomial	5475
discordant	333
DiscoRhythm	328
distinct	356
dittoSeq	1470
divergence	236
dks	258
DMCFB	290
DMCHMM	302
dmGsea	162
DMRcaller	439
DMRcate	1362
DMRforPairs	186
DMRScan	367
dmrseq	568
DNABarcodeCompatibility	205
DNABarcodes	354
DNAcopy	4504
DNAcycP2	149
dnaEPICO	18
DNAfusion	243
DNaseR	33
DNAshapeR	478
DNEA	139
domainsignatures	107
dominatR	82
DominoEffect	292
dominoSignal	192
doppelgangR	369
DOQTL	141
Doscheda	324
DOSE	26693
doseR	319
DOtools	107
DOTSeq	72
doubletrouble	274
dpeak	87
drawProteins	340
dreamlet	391
DRIMSeq	695
DriverNet	271
DropletUtils	3156
drugfindR	69
drugTargetInteractions	255
DrugVsDisease	364
dSimer	82
DspikeIn	141
DSS	1108
dStruct	236
DTA	271
dualKS	204
Dune	240
DupChecker	75
DuplexDiscovereR	165
dupRadar	351
dyebias	432
DynDoc	2007
easier	374
EasyCellType	241
easylift	202
EasyqpcR	133
easyreporting	250
easyRNASeq	490
EBarrays	701
EBcoexpress	350
EBImage	3358
EBSEA	255
EBSeq	720
EBSeqHMM	160
ecolitk	475
EDASeq	2010
edd	98
EDDA	128
edge	398
edgeR	28797
EDIRquery	184
eds	366
eegc	171
EGAD	369
EGSEA	530
eiR	352
eisa	262
eisaR	393
ELBOW	132
ELMER	510
ELViS	165
EMDomics	375
EMMA	12
EmpiricalBrownsMethod	303
ENCODExplorer	102
EnhancedVolcano	7231
enhancerHomologSearch	261
EnMCB	263
ENmix	616
EnrichDO	183
EnrichedHeatmap	1381
EnrichmentBrowser	830
enrichplot	28290
enrichTF	127
enrichViewNet	215
ensembldb	10651
ensemblVEP	233
ENVISIONQuery	101
epialleleR	292
EpiCompare	261
epidecodeR	238
EpiDISH	1155
epigenomix	389
epigraHMM	338
epihet	73
EpiMix	264
epimutacions	280
epiNEM	350
EpipwR	140
epiregulon	194
epiregulon.extra	191
epiRomics	41
epiSeeker	61
epistack	284
epistasisGA	210
EpiTxDb	318
epivizr	511
epivizrChart	340
epivizrData	391
epivizrServer	308
epivizrStandalone	359
erccdashboard	384
erma	302
ERSSA	296
esATAC	362
escape	670
escheR	364
esetVis	364
eudysbiome	383
evaluomeR	298
EventPointer	385
EWCE	438
ExCluster	225
ExiMiR	415
exomeCopy	471
exomePeak	187
exomePeak2	172
exonmap	61
ExperimentHub	10169
ExperimentHubData	748
ExperimentSubset	272
explorase	91
ExploreModelMatrix	430
ExpoRiskR	45
ExpressionAtlas	372
ExpressionView	157
exprExternal	22
externalVector	41
extraChIPs	319
fabia	447
facopy	161
factDesign	424
factR	199
faers	274
FamAgg	337
famat	290
farms	250
fastLiquidAssociation	320
FastqCleaner	341
fastRanges	52
fastreeR	222
fastseg	1348
fbat	61
FCBF	144
fCCAC	366
fCI	286
fcoex	128
fcScan	308
fdrame	328
FEAST	407
FeatSeekR	186
fedup	236
FELLA	420
FEM	119
fenr	206
ffpe	403
fgga	240
FGNet	389
fgsea	28101
FilterFFPE	288
findIPs	173
FindIT2	292
FindMyFriends	122
FinfoMDS	106
FISHalyseR	265
fishpond	824
FitHiC	229
flagme	339
FLAMES	298
flipflop	112
flowAI	778
flowBeads	375
flowBin	346
flowcatchR	401
flowCHIC	329
flowCL	136
flowClean	450
flowClust	1578
flowCore	3663
flowCut	346
flowCyBar	242
flowDensity	570
flowFit	115
flowFlowJo	71
flowFP	567
flowGate	248
flowGraph	210
flowMap	230
flowMatch	391
flowMeans	536
flowMerge	419
flowPeaks	387
flowPhyto	68
flowPloidy	274
flowPlots	263
flowQ	163
flowQB	121
FlowRepositoryR	113
FlowSOM	1465
flowSpecs	325
flowSpy	42
flowStats	1177
flowTime	320
flowTrans	393
flowType	166
flowUtils	272
flowViz	1735
flowVS	412
flowWorkspace	2010
fmcsR	589
fmrs	218
fobitools	253
focalCall	93
FoldGO	163
FourCSeq	182
fourSynergy	64
fRagmentomics	59
fraq	50
FRASER	405
frenchFISH	170
FRGEpistasis	228
frma	539
frmaTools	405
FScanR	58
FunChIP	174
FunciSNP	183
funOmics	137
funtooNorm	317
FuseSOM	253
G4SNVHunter	176
GA4GHclient	308
GA4GHshiny	296
gaga	455
gage	1238
gaggle	247
gaia	148
GAPGOM	74
GAprediction	227
garfield	222
GARS	277
GateFinder	263
gatom	242
gaucho	81
GBScleanR	209
gcapc	407
gcatest	266
gCMAP	157
gCMAPWeb	155
GCPtools	339
gCrisprTools	383
gcrma	1717
GCSConnection	36
GCSFilesystem	30
GCSscore	115
GDCRNATools	464
gDNAx	226
gDR	175
gDRcore	209
gDRimport	211
gDRstyle	225
gDRutils	198
GDSArray	310
gdsfmt	2826
GeDi	206
geecc	101
GEM	256
gemini	222
gemma.R	274
genArise	342
genbankr	307
gene2pathway	36
GeneAccord	85
GeneAnswers	219
geneAttribution	303
GeneBreak	363
geneClassifiers	288
GENE.E	53
GeneExpressionSignature	401
genefilter	14444
genefu	844
GeneGA	214
GeneGeneInteR	198
GeneGroupAnalysis	23
GeneMeta	583
GeneNetworkBuilder	437
GeneOverlap	1183
geneplast	351
geneplotter	4102
GeneR	77
geneRecommender	341
GeneRegionScan	454
GeneRfold	22
geneRxCluster	321
GeneSelectMMD	395
GeneSelector	149
GENESIS	786
GeneSpring	64
GeneStructureTools	344
geNetClassifier	412
GeneticsBase	50
GeneticsDesign	108
GeneticsPed	316
GeneTonic	402
GeneTraffic	55
GeneTS	49
geneXtendeR	366
GENIE3	1886
genoCN	187
GenoGAM	144
genomation	1142
GenomAutomorphism	242
GenomeBase	19
GenomeGraphs	179
GenomeInfoDb	44685
genomeIntervals	482
genomes	304
GenomicAlignments	25563
GenomicCoordinates	47
GenomicDataCommons	1343
GenomicDistributions	317
GenomicFeatures	18725
GenomicFiles	1278
genomicInstability	229
GenomicInteractionNodes	223
GenomicInteractions	757
GenomicOZone	271
GenomicPlot	239
GenomicRanges	53952
GenomicScores	926
GenomicSuperSignature	300
GenomicTuples	382
Genominator	163
genoset	186
genotypeeval	153
GenoView	34
genphen	151
GenProSeq	177
GenRank	55
GenVisR	561
GeoDiff	260
GEOexplorer	152
GEOfastq	191
GEOmetadb	578
geomeTriD	205
GeomxTools	680
GEOquery	14239
GEOsearch	59
GEOsubmission	332
GeoTcgaData	254
gep2pep	246
gesel	10
gespeR	232
getDEE2	240
geva	223
GEWIST	257
GExPipe	1
geyser	150
gff3Plotter	24
gg4way	218
GGBase	247
ggbio	3066
ggcyto	1499
ggkegg	559
ggmanh	280
ggmsa	861
GGPA	223
ggsc	248
ggseqalign	147
ggspavis	561
GGtools	314
ggtree	32590
ggtreeDendro	195
ggtreeExtra	2251
ggtreeSpace	157
GIGSEA	225
ginmappeR	159
gINTomics	158
girafe	432
GISPA	172
GLAD	573
GladiaTOX	249
Glimma	1185
glmGamPoi	6613
glmSparseNet	349
GlobalAncova	1525
globalSeq	275
globaltest	2327
GloScope	204
glycoTraitR	58
gmapR	376
GmicR	261
gmoviz	317
GMRP	346
GNET2	243
GNOSIS	203
GOaGO	50
goatea	97
goCluster	20
GOexpress	467
GOfan	56
GOfuncR	442
GOFunction	183
GoogleGenomics	89
GOpro	380
goProfiles	531
GOSemSim	25533
goseq	1752
GOSim	265
goSorensen	206
goSTAG	357
GOstats	1820
GOsummaries	201
GOTHiC	545
goTools	393
GPA	205
gpart	128
gpls	573
gprege	138
gpuMagic	185
gQTLBase	138
gQTLstats	153
GrafGen	190
gramm4R	28
GRaNIE	321
granulator	150
graper	252
graph	24379
GraphAlignment	283
GraphAT	427
GraphExperiment	46
graphite	5952
GraphPAC	215
GRENITS	281
GreyListChIP	1429
GRmetrics	352
groHMM	445
GRridge	146
GSABenchmark	47
GSALightning	244
GSAR	410
GSCA	324
gscreend	265
GSEABase	12376
GSEABenchmarkeR	357
GSEAlm	478
GSEAmining	247
gsean	281
GSgalgoR	241
GSReg	339
GSRI	403
GSVA	11123
gtrellis	442
GUIDEseq	486
Guitar	449
gVenn	144
Gviz	3861
GWAS.BAYES	254
gwascat	987
GWASTools	987
gwasurvivr	299
GWENA	293
gypsum	4705
h5mread	13125
h5vc	642
hammers	47
hapFabia	358
Harman	460
HarmonizR	232
Harshlight	323
hca	140
HCABrowser	55
HCAExplorer	27
HCAMatrixBrowser	16
HCsnip	106
HDF5Array	18361
HDTD	230
hdxmsqc	193
heatmaps	517
Heatplus	614
HelloRanges	503
HELP	380
HEM	404
hermes	334
HERON	206
Herper	205
hexbin	108
HGC	217
hiAnnotator	307
HIBAG	392
HicAggR	196
HiCaptuRe	128
HiCBricks	364
HiCcompare	587
HiCDCPlus	296
HiCDOC	277
HiCExperiment	302
HiContacts	327
HiCool	134
HiCParser	148
HiCPotts	129
hicrep	42
hicVennDiagram	193
hierGWAS	312
hierinf	201
HilbertCurve	427
HilbertVis	466
HilbertVisGUI	175
HiLDA	323
hipathia	347
HIPPO	222
hiReadsProcessor	236
HIREewas	277
HiSpaR	46
HistoImagePlot	53
HiTC	552
hmdbQuery	301
HMMcopy	615
HoloFoodR	174
hoodscanR	258
hopach	746
HPAanalyze	399
hpar	756
HPAStainR	44
HPiP	212
HTqPCR	517
HTSanalyzeR	167
HTSeqGenie	106
htSeqTools	168
HTSFilter	650
HuBMAPR	157
HubPub	708
HumanTranscriptomeCompendium	146
hummingbird	252
HVP	137
HybridExpress	184
HybridMTest	350
hypeR	291
hyperdraw	404
hypergraph	466
iASeq	238
iasva	294
iBBiG	300
Ibex	108
ibh	304
iBMQ	233
iCARE	278
Icens	763
icetea	318
iCheck	346
iChip	375
iClusterPlus	569
iCNV	243
iCOBRA	675
ideal	481
IdeoViz	388
idiogram	498
IdMappingAnalysis	127
IdMappingRetrieval	110
idpr	281
idr2d	313
IFAA	195
iFlow	33
igblastr	206
iGC	288
IgGeneUsage	252
igvR	384
igvShiny	260
IHW	1360
illuminaio	3528
ILoReg	271
ImageArray	62
imageFeatureTCGA	45
imageHTS	233
imageTCGA	140
imageTCGAutils	52
IMAS	272
imcRtools	440
Imetagene	106
IMMAN	238
immApex	505
immGLIPH	11
immLynx	40
immReferent	136
ImmuneSpaceR	179
immunoClust	333
immunogenViewer	138
immunotation	234
iModMix	118
IMPCdata	219
ImpulseDE	44
ImpulseDE2	70
impute	13400
INDEED	202
iNETgrate	194
infercnv	2072
infinityFlow	253
Informeasure	189
InPAS	493
INPower	286
inSilicoDb	115
inSilicoMerging	70
INSPEcT	488
INTACT	182
InTAD	326
intansv	402
interacCircos	186
InteractionSet	2001
InteractiveComplexHeatmap	698
interactiveDisplay	542
interactiveDisplayBase	2848
InterCellar	284
IntEREst	368
InterMineR	212
IntOMICS	40
IntramiRExploreR	258
inveRsion	116
IONiseR	502
iontree	82
iPAC	261
iPath	196
ipdDb	284
IPO	377
IPPD	126
IRanges	65232
IRISFGM	78
IrisSpatialFeatures	20
ISAnalytics	254
iscream	128
iSEE	774
iSEEde	222
iSEEfier	193
iSEEhex	263
iSEEhub	250
iSEEid	11
iSEEindex	211
iSEEpathways	220
iSEEtree	185
iSEEu	360
iSeq	274
ISLET	222
islify	151
iSNetwork	31
isobar	487
IsoBayes	193
IsoCorrectoR	255
IsoCorrectoRGUI	216
IsoformSwitchAnalyzeR	729
IsoGeneGUI	223
ISoLDE	225
isomiRs	393
iSPlot	32
ITALICS	400
iterativeBMA	334
iterativeBMAsurv	267
iterClust	113
iteremoval	80
IVAS	383
ivygapSE	270
IWTomics	326
jazzPanda	185
jmosaics	63
joda	142
JunctionSeq	106
jvecfor	45
karyoploteR	1436
katdetectr	259
KBoost	178
KCsmart	419
kebabs	489
KEGGemUP	8
KEGGgraph	6548
KEGGlincs	333
keggorth	31
keggorthology	564
KEGGprofile	143
KEGGREST	43796
KEGGSOAP	77
kimod	64
KinSwingR	277
kissDE	298
kmcut	151
KnowSeq	304
knowYourCG	179
koinar	169
LACE	342
LACHESIS	85
lapmix	248
LBE	450
lcmsPlot	60
ldblock	351
LEA	1015
leapR	61
LedPred	233
lefser	814
lemur	220
les	379
levi	228
lfa	410
Lheuristic	131
limma	41961
limmaGUI	436
limpa	247
limpca	182
LimROTS	167
LINC	77
LineagePulse	115
lineagespot	229
LinkHD	267
linkSet	102
Linnorm	493
LinTInd	214
lionessR	320
lipidr	374
LipidTrend	126
LiquidAssociation	343
lisaClust	352
lmdme	352
LMGene	227
lncRna	43
LOBSTAHS	294
loci2path	286
logicFS	394
logitT	192
Logolas	68
lol	89
LOLA	544
looking4clusters	118
LoomExperiment	726
LowMACA	165
LPE	403
LPEadj	180
lpNet	284
lpsymphony	1524
LRBaseDbi	271
LRcell	252
LRDE	36
lumi	1604
lute	83
LVSmiRNA	154
LymphoSeq	347
M3C	773
M3D	138
M3Drop	625
m6Aboost	242
maanova	257
Maaslin2	1240
maaslin3	456
Macarron	169
macat	332
maCorrPlot	344
MACPET	117
MACSQuantifyR	208
MACSr	262
maDB	112
made4	674
MADSEQ	267
maftools	3155
MAGAR	250
MAGeCKFlute	277
magpie	247
magrene	211
MAI	269
maigesPack	311
MAIT	312
makecdfenv	615
makePlatformDesign	32
MANOR	379
manta	173
MantelCorr	321
MAPFX	195
mAPKL	178
maPredictDSC	313
mapscape	241
mariner	228
markeR	127
marr	276
marray	2436
martini	285
maser	396
maSigPro	730
maskBAD	357
MassArray	268
massiR	383
MassSpecWavelet	2464
MAST	2943
mastR	266
matchBox	277
matchprobes	65
MatrixGenerics	49979
MatrixQCvis	266
MatrixRider	358
matter	579
MaxContrastProjection	57
MBAmethyl	225
MBASED	419
MBCB	305
MBECS	247
mbkmeans	907
mbOmic	30
mBPCR	408
MBQN	300
mbQTL	149
MBttest	306
mcaGUI	128
MCbiclust	365
MCRestimate	147
mCSEA	375
mdgsa	148
mdp	293
mdqc	370
MDSvis	46
MDTS	263
MEAL	430
MeasurementError.cor	272
MEAT	331
MEB	287
MEDIPS	548
MEDME	389
megadepth	308
MEIGOR	330
Melissa	198
MeLSI	42
memes	418
MergeMaid	223
Mergeomics	303
MeSHDbi	532
meshes	413
meshr	454
MeSHSim	31
MesKit	361
messina	372
metaArray	199
Metab	166
metabCombiner	277
metabinR	214
MetaboAnnotation	398
MetaboAnnotatoR	41
MetaboCoreUtils	3497
MetaboDynamics	172
metabolomicsWorkbenchR	313
metabom8	49
metabomxtr	322
MetaboSignal	410
metaCCA	244
MetaCyto	294
MetaDICT	115
metagene	311
metagene2	385
metagenomeFeatures	107
metagenomeSeq	2291
metahdep	306
metaMS	423
MetaNeighbor	313
MetaPhOR	232
metapod	7510
metapone	247
MetaProViz	53
metaSeq	343
metaseqR	185
metaseqR2	346
metavizr	138
MetaVolcanoR	114
metaX	27
MetCirc	329
MethCP	95
methimpute	326
methInheritSim	306
methodical	177
MethPed	352
MethReg	301
methrix	423
MethTargetedNGS	282
methVisual	156
methyAnalysis	196
MethylAid	443
methylCC	349
methylclock	442
methylGSA	392
methyLImp2	185
methylInheritance	336
methylKit	1246
MethylMix	409
methylMnM	356
methylPipe	447
methylscaper	260
MethylSeekR	535
methylSig	356
methylumi	1907
methyvim	72
MetID	248
MetMashR	153
MetNet	364
mfa	283
Mfuzz	1756
MGFM	356
MGFR	282
MGnifyR	201
mgsa	378
mia	2250
miaDash	146
miaSim	256
miaTime	166
miaViz	573
MiChip	352
microbiome	2631
microbiomeDASim	222
microbiomeExplorer	263
microbiomeMarker	448
MicrobiomeProfiler	262
MicrobiotaProcess	661
microRNA	947
microSTASIS	87
MICSQTL	197
midasHLA	213
MIGSA	158
miloR	1357
mimager	332
MIMOSA	191
mina	207
MineICA	459
minet	1083
minfi	3038
MinimumDistance	468
MiPP	408
miQC	381
MIRA	346
MiRaGE	512
miRBaseConverter	437
miRcomp	358
mirIntegrator	349
MIRit	215
miRLAB	373
miRmine	191
miRNAmeConverter	272
miRNApath	279
miRNAtap	414
miRSM	338
miRsponge	40
miRspongeR	309
Mirsynergy	97
mirTarRnaSeq	260
missMethyl	1412
missRows	266
mist	145
mistyR	338
mitch	325
mitoClone2	232
mitology	179
mitoODE	96
mixOmics	4737
MLInterfaces	959
mlm4omics	20
MLP	543
MLSeq	440
MMAPPR2	71
MMDiff	110
MMDiff2	394
mmgmos	30
mmnet	69
MmPalateMiRNA	152
MMUPHin	366
mnem	351
moanin	269
mobileRNA	199
MobilityTransformR	64
MODA	271
ModCon	186
Modstrings	374
MOFA	47
MOFA2	1416
MOGAMUN	240
mogsa	520
MoleculeExperiment	221
MOMA	296
monaLisa	439
monocle	3978
Moonlight2R	215
MoonlightR	361
MoPS	98
mosaics	553
mosbi	225
MOSClip	176
mosdef	415
MOSim	327
Motif2Site	243
motifbreakR	513
motifcounter	272
MotifDb	1175
motifmatchr	2031
MotifPeeker	151
motifRG	150
motifStack	1155
motifTestR	217
MotIV	191
MouseFM	240
MPAC	151
MPFE	225
mpra	387
MPRAnalyze	300
MQmetrics	73
mQTL.NMR	98
msa	2526
MSA2dist	263
MsBackendMassbank	273
MsBackendMassIVE	0
MsBackendMetaboLights	206
MsBackendMgf	919
MsBackendMsp	521
MsBackendRawFileReader	282
MsBackendSql	274
MsCoreUtils	4571
MsDataHub	332
MSEADbi	16
MsExperiment	1797
MsFeatures	2044
msgbsR	334
MSGFgui	136
MSGFplus	121
msImpute	290
mslp	151
msmsEDA	479
msmsTests	508
MSnbase	4493
MSnID	607
mspms	206
MSPrep	221
msPurity	366
msqrob2	414
MsQuality	219
MsStash	2
MSstats	1007
MSstatsBig	197
MSstatsBioNet	186
MSstatsConvert	806
MSstatsLiP	317
MSstatsLOBD	186
MSstatsPTM	453
MSstatsQC	280
MSstatsQCgui	199
MSstatsResponse	135
MSstatsSampleSize	99
MSstatsShiny	263
MSstatsTMT	581
MSstatsTMTPTM	26
MSTree	13
MTseeker	37
MuData	258
Mulcom	371
MultiAssayExperiment	8577
MultiBaC	260
multiClust	333
multicrispr	292
MultiDataSet	2203
multiGSEA	354
multiHiCcompare	401
MultiMed	300
multiMiR	965
MultimodalExperiment	221
MultiOmicsBridge	3
multiOmicsViz	145
MultipleAlignment	14
MultiRNAflow	203
multiscan	368
multiSight	74
multistateQTL	175
multiWGCNA	215
multtest	13451
mumosa	294
MungeSumstats	822
muscat	1171
muscle	643
musicatk	322
MutationalPatterns	727
mutscan	140
MutSeqR	77
MVCClass	352
mvGST	80
MWASTools	399
mygene	648
myvariant	420
mzID	4040
mzR	4739
NADfinder	380
NanoMethViz	339
NanoStringDiff	325
NanoStringNCTools	702
NanoStringQCPro	178
nanotatoR	115
NanoTube	300
NarrowPeaks	150
NBAMSeq	270
NBSplice	112
ncdfFlow	1893
ncGTW	248
NCIgraph	255
ncRNAtools	266
ndexr	260
neaGUI	71
nearBynding	263
Nebulosa	1580
NeighborNet	101
nem	306
nempi	246
NetActivity	229
netbenchmark	76
netbiov	181
netboost	231
netboxr	67
netDx	99
nethet	349
netOmics	95
NetPathMiner	317
netprioR	240
netReg	53
netresponse	381
NetSAM	339
netSmooth	337
networkBMA	138
netZooR	154
NeuCA	108
NewWave	255
NGScopy	89
ngsReports	323
nipalsMCIA	228
nnNorm	372
nnSVG	362
NOISeq	826
nondetects	361
NoRCE	307
normalize450K	297
NormalyzerDE	476
NormqPCR	441
normr	432
notame	147
notameStats	109
notameViz	131
NPARC	287
npGSEA	409
NTW	282
nucleoSim	318
nucleR	524
nuCpos	243
nudge	130
nullranges	401
NuPoP	346
NxtIRFcore	93
OAtools	54
occugene	279
OCplus	411
octad	269
ODER	67
odseq	275
OGRE	248
OGSA	95
oligo	3498
oligoClasses	2680
OLIN	478
OLINgui	391
omada	149
OmaDB	400
omicade4	498
OmicCircos	443
omicplotR	236
omicRexposome	332
omicsGMF	122
OmicsLonDA	103
OmicsMarkeR	96
OmicsMLRepoR	119
OMICsPCA	350
omicsPrint	356
omicsViewer	260
Omixer	219
OmnipathR	1865
ompBAM	236
omXplore	212
Onassis	87
oncomix	270
oncoscanR	220
OncoScore	312
OncoSimulR	366
oneChannelGUI	172
oneSENSE	95
onlineFDR	202
ontoCAT	97
ontoProc	462
ontoProc2	2
ontoTools	95
openCyto	1384
openPrimeR	377
openPrimeRui	112
OpenStats	194
OperaMate	45
oposSOM	390
oppar	375
oppti	127
optimalFlow	223
OPWeight	287
OrderedList	400
ORFhunteR	251
ORFik	565
OrganismDbi	3411
Organism.dplyr	421
orthogene	880
orthos	219
OSAT	333
Oscope	384
OSTA.data	228
OTUbase	443
OutlierD	183
OUTRIDER	507
OutSplice	215
OVESEG	290
PAA	426
packFinder	289
padma	271
PADOG	545
pageRank	224
PAIRADISE	309
paircompviz	309
pairedGSEA	206
pairkat	239
pairseqsim	16
pamr	94
pandaR	397
panelcn.mops	378
PAnnBuilder	114
PanomiR	245
panoramic	17
panp	514
PANR	336
PanViz	100
PanVizGenerator	98
PAPi	142
parati	47
pareg	66
parglms	354
parody	398
partCNV	166
PAST	322
Path2PPI	309
pathifier	310
pathlinkR	212
pathMED	102
PathNet	316
PathoStat	329
pathprint	61
pathRender	407
pathVar	165
pathview	5394
pathwayPCA	309
PathwaySplice	111
PatientGeneSets	27
paxtoolsr	193
Pbase	136
pbcmc	66
pcaExplorer	591
pcaGoPromoter	116
pcaMethods	6729
PCAN	365
PCAtools	1377
pcot2	246
PCpheno	262
pcxn	102
PDATK	280
pdInfoBuilder	586
pdmclass	198
PeacoQC	543
peakCombiner	115
peakPantheR	266
PECA	372
peco	278
Pedixplorer	208
pengls	192
PepSetTest	161
PepsNMR	324
pepStat	404
pepXMLTab	286
PERFect	103
periodicDNA	333
perturbatr	61
pfamAnalyzeR	404
PFP	57
PGA	207
pgca	199
pgen2gds	9
PGSEA	317
pgUtils	55
pgxRpi	160
phantasus	343
phantasusLite	192
PharmacoGx	716
phemd	155
phenoDist	108
PhenoGeneRanker	159
phenomis	220
phenopath	467
phenoTest	508
PhenStat	248
philr	527
PhIPData	272
phosphonormalizer	238
PhosR	451
phylobar	18
PhyloProfile	340
phyloseq	7514
Pi	196
piano	903
PICB	163
pickgene	320
PICS	376
Pigengene	348
PING	338
PinPath	15
pint	103
pipeComp	314
pipeFrame	315
PIPETS	169
Pirat	166
PIUMA	173
pkgDepTools	251
plaid	68
planet	403
planttfhunter	203
plasmut	160
plateCore	194
plethy	208
plgem	521
plier	494
PlinkMatrix	46
PloGO2	99
plotgardener	448
plotGrouper	242
PLPE	347
plrs	176
PLSDAbatch	195
plw	179
plyinteractions	234
plyranges	1465
plyxp	288
pmm	228
pmp	377
PMScanR	124
PoDCall	210
podkat	494
poem	175
pogos	296
polyester	325
Polyfit	110
PolySTest	164
Polytect	143
POMA	374
posDemux	58
POST	61
PostChicago	10
postNet	64
PoTRA	67
PowerExplorer	48
powerTCR	487
POWSC	255
ppcseq	246
PPInfer	329
ppiStats	292
pqsfinder	506
prada	233
pram	316
prebs	400
preciseTAD	356
PrecisionTrialDrawer	66
PREDA	480
predictionet	120
preprocessCore	17489
primirTSS	325
PrInCE	265
Prize	61
proActiv	368
proBAMr	367
proBatch	212
PROcess	394
procoil	441
ProCoNA	113
proDA	491
proFIA	133
profileplyr	384
profileScoreDist	276
progeny	1217
projectR	330
pRoloc	926
pRolocGUI	429
PROMISE	345
PRONE	186
PROPER	393
PROPS	302
Prostar	316
prot2D	137
proteasy	59
proteinProfiles	235
ProteoDisco	322
ProteomicsAnnotationHubData	113
ProteoMM	308
proteoQC	102
protGear	260
ProtGenerics	12801
PSEA	206
psichomics	389
PSICQUIC	167
PSMatch	3364
psygenet2r	209
ptairMS	301
PTMods	563
PubScore	57
pulsedSilac	63
puma	536
PureCN	586
pvac	365
pvca	597
Pviz	380
pwalign	8726
PWMEnrich	630
pwOmics	296
pwrEWAS	80
qckitfastq	131
qcmetrics	479
QDNAseq	761
QFeatures	3948
qmtools	247
qpcrNorm	381
qpgraph	720
qPLEXanalyzer	325
qrqc	229
QRscore	146
qsea	401
qsmooth	346
QSutils	346
qsvaR	240
QTLExperiment	196
Qtlizer	251
QUALIFIER	152
quantiseqr	1183
quantro	620
quantsmooth	877
QuartPAC	185
QuasR	858
QuaternaryProd	236
QUBIC	324
queeems	38
qusage	685
qvalue	25906
R3CPET	382
r3Cseq	484
R453Plus1Toolbox	423
R4RNA	977
RadioGx	310
raer	257
RaggedExperiment	1319
RAIDS	186
rain	412
rama	227
RamiGO	87
ramr	271
ramwas	406
RandomWalkRestartMH	129
randPack	335
randRotation	189
RankMap	45
RankProd	645
RAREsim	182
RareVariantVis	390
Rariant	197
Rarr	575
rawDiag	179
rawrr	342
RbcBook1	599
Rbec	165
RBedMethyl	59
RBGL	10257
RBioFormats	461
RBioinf	295
rBiopaxParser	822
rBLAST	295
RBM	311
Rbowtie	693
Rbowtie2	499
RbowtieCuda	85
RBPSpecificity	2
rbsurv	363
Rbwa	175
Rcade	289
RCAS	447
RCASPAR	246
rcellminer	429
rCGH	586
Rchemcpp	149
RchyOptimyx	125
RcisTarget	1621
RCM	319
Rcollectl	94
Rcpi	429
RCSL	228
Rcwl	294
RcwlPipelines	235
RCX	231
RCy3	1217
RCyjs	372
RCytoscape	90
RDAVIDWebService	156
Rdbi	73
RdbiPgSQL	28
rDGIdb	141
Rdisop	1000
RDRToolbox	379
ReactomeContentService4R	76
ReactomeGraph4R	58
ReactomeGSA	404
ReactomePA	5776
readat	75
ReadqPCR	432
reb	247
REBET	225
rebook	290
receptLoss	129
reconsi	201
recount	761
recount3	1034
recountmethylation	330
recoup	475
RedeR	583
RedisParam	189
REDseq	405
ReducedExperiment	167
RefNet	139
RefPlus	345
Rega	44
RegEnrich	371
regionalpcs	147
RegionalST	217
regioneR	2444
regioneReloaded	214
regionReport	501
regsplice	323
regutools	315
REMP	355
Repitools	500
ReportingTools	1045
reposTools	30
RepViz	238
ReQON	219
ResidualMatrix	5042
RESOLVE	212
Resourcerer	81
restfulSE	203
retrofit	195
ReUseData	174
rexposome	419
rfaRm	274
Rfastp	314
RFGeneRank	30
RFLOMICS	167
rflowcyt	107
rfPred	384
rGADEM	474
RGalaxy	169
rGenomeTracks	195
Rgin	60
RGMQL	83
RgnTX	155
rgoslin	295
RGraph2js	325
Rgraphviz	10517
rGREAT	1045
RGSEA	365
rgsepd	386
rhdf5	26269
rhdf5client	349
rhdf5filters	24709
Rhdf5lib	27415
rhinotypeR	166
Rhisat2	358
Rhtslib	26783
rHVDM	223
RiboCrypt	301
RiboDiPA	273
RiboProfiling	383
ribor	260
riboSeqR	420
ribosomeProfilingQC	336
rifi	202
rifiComparative	184
Rigraphlib	1739
rigvf	144
RImmPort	248
Ringo	458
Rintact	43
RIPAT	102
RIPSeeker	174
Risa	296
RITAN	272
RIVER	314
RJMCMCNucleosomes	336
RLassoCox	189
RLMM	309
RLSeq	77
RMAGEML	30
Rmagpie	355
RMAPPER	58
RMassBank	529
rMAT	140
rmelting	242
RmiR	153
Rmmquant	278
rmspc	235
RNAAgeCalc	323
RNAdecay	207
rnaEditr	262
RNAinteract	220
RNAither	206
RNAmodR	337
RNAmodR.AlkAnilineSeq	285
RNAmodR.ML	315
RNAmodR.RiboMethSeq	269
RNAprobR	125
RNAsense	261
rnaseqcomp	331
RNAseqCovarImpute	192
rnaSeqMap	239
RNASeqPower	395
RNASeqR	82
RnaSeqSampleSize	383
RNAshapeQC	55
RnBeads	714
Rnits	365
roar	419
roastgsa	202
ROC	1674
ROCpAI	235
RolDE	209
Roleswitch	137
Rolexa	103
rols	915
ROntoTools	515
ropls	2238
ROSeq	283
ROTS	532
RPA	449
rprimer	274
RProtoBufLib	3147
RpsiXML	321
rpx	879
Rqc	606
rqt	269
rqubic	336
rRDP	300
Rredland	35
RRHO	340
rrvgo	985
Rsamtools	29790
rsbml	389
rScudo	308
rsemmed	219
RSeqAn	234
rSFFreader	125
RSNPper	49
Rsubread	2377
RSVSim	424
rSWeeP	256
rTANDEM	145
RTCA	331
RTCGA	807
RTCGAToolbox	925
RTN	519
RTNduals	288
RTNsurvival	301
RTools4TB	19
RTopper	430
Rtpca	271
rtracklayer	24347
Rtreemix	296
rTRM	487
rTRMui	325
RUCova	185
runibic	208
Ruuid	73
RUVcorr	308
RUVnormalize	357
RUVSeq	1287
Rvisdiff	207
RVS	265
RWebServices	35
rWikiPathways	620
S4Arrays	50199
S4Cartographer	2
S4Vectors	68692
safe	984
SAGElyzer	36
sagenhaft	349
SAGx	239
SAIGEgds	270
samExploreR	57
sampleClassifier	254
SamSPECTRAL	377
sangeranalyseR	429
sangerseqR	859
SanityR	128
SANTA	339
sapFinder	131
saps	27
SARC	93
sarks	250
saseR	181
satuRn	594
savR	103
SBGNview	338
sbgr	9
SBMLR	376
SC3	749
scafari	160
Scale4C	307
ScaledMatrix	15969
scAlign	100
scanMiR	280
scanMiRApp	269
scAnnotatR	262
SCAN.UPC	502
SCANVIS	250
SCArray	281
SCArray.sat	193
SCATE	77
scater	10351
scatterHatch	179
scBatchQC	7
scBFA	274
SCBN	228
scBubbletree	236
scCB2	277
scClassifR	38
scClassify	365
sccomp	343
scCompoundDE	3
scConform	49
scDataviz	279
scDblFinder	4071
scDD	509
scDDboost	225
scde	705
scDesign3	245
scDiagnostics	185
scDotPlot	210
scds	988
scECODA	54
SCFA	237
scFastDE	8
scFeatureFilter	281
scFeatures	248
scfind	42
scGPS	313
scGraphVerse	118
schex	359
scHiCcompare	147
scHOT	307
scider	228
scifer	233
ScISI	288
scLANE	127
scLang	54
scMAGeCK	49
scmap	707
scMerge	623
scMET	238
scmeth	343
scMitoMut	170
scMultiSim	209
SCnorm	412
scone	461
Sconify	261
SCOPE	308
scoreInvHap	305
scoup	163
scp	419
scPassport	44
scPCA	330
scPipe	423
scQTLtools	126
scran	8027
scrapper	1910
scReClassify	290
scRecover	276
screenCounter	212
ScreenR	187
scRepertoire	970
scRNAseqApp	256
scruff	348
scry	568
scShapes	182
scsR	123
scTensor	313
scTGIF	333
scTHI	246
scToppR	54
scTreeViz	261
scTypeEval	46
scuttle	12256
scviR	160
SDAMS	263
seahtrue	190
sechm	317
segmenter	264
segmentSeq	489
selectKSigs	210
SELEX	341
SemDist	357
semisup	234
SEMPLR	61
SemSim	44
SEPA	60
SEPIRA	152
seq2pathway	294
seqArchR	159
seqArchRplus	137
SeqArray	1311
seqbias	253
seqCAT	325
seqCNA	158
seqcombo	222
SeqGate	240
SeqGSEA	430
seq.hotSPOT	168
Seqinfo	36567
seqLogo	3928
seqPattern	1164
seqplots	173
seqsetvis	397
SeqSQC	381
Seqtometry	50
seqTools	273
SeqVarTools	841
SEraster	159
sesame	1192
SETA	125
SEtools	284
sevenbridges	347
sevenC	361
sfi	56
SGCP	202
SGSeq	637
SharedObject	346
shinybiocloader	115
shinyDSP	165
shinyepico	276
shiny.gosling	126
shinyMethyl	439
shinyTANDEM	105
ShortRead	7205
SIAMCAT	367
SICtools	308
sigaR	150
SigCheck	364
sigFeature	467
SigFuge	301
siggenes	3983
sights	282
signatureSearch	422
signeR	416
signet	40
signifinder	230
sigPathway	239
SigsPack	293
sigsquared	305
SIM	371
SIMAT	299
SimBindProfiles	195
SimBu	231
SIMD	233
SimFFPE	257
similaRpeak	343
SIMLR	464
simona	1029
simPIC	182
simpleaffy	280
simpleSeg	379
simplifyEnrichment	1454
simulatorAPMS	43
simulatorZ	151
sincell	349
singIST	50
single	140
SingleCellAlleleExperiment	200
SingleCellExperiment	22125
SingleCellSignalR	471
singleCellTK	594
SingleMoleculeFootprinting	228
SingleR	6073
singscore	2255
SiPSiC	179
SISPA	133
sitadela	265
Site2Target	144
sitePath	271
sizepower	338
SJava	29
sketchR	198
skewr	344
slalom	229
SLGI	258
slingshot	3524
slinky	94
SLqPCR	300
SMAD	214
SMAP	218
smartid	186
SmartPhos	74
SMITE	381
smoothclust	182
smoppix	173
SMTrackR	57
SNAGEE	305
snapCGH	340
snapcount	271
snifter	669
snm	372
SNPchip	260
SNPediaR	234
SNPhood	447
snpMatrix	42
SNPRelate	2361
snpStats	2693
soGGi	511
sojourner	73
SomatiCA	80
SomaticSignatures	467
SOMNiBUS	228
sosta	213
SpaceMarkers	174
SpacePAC	255
SpaceTrooper	189
spacexr	528
spade	68
Spaniel	304
SpaNorm	262
spARI	125
sparrow	521
SparseArray	56608
sparseDOSSA	122
sparseMatrixStats	19578
sparsenetgls	219
SparseSignatures	340
spaSim	226
SpatialArtifacts	56
SpatialCPie	269
spatialDE	305
SpatialDecon	409
SpatialExperiment	9120
SpatialExperimentIO	238
spatialFDA	197
SpatialFeatureExperiment	405
spatialHeatmap	274
SpatialOmicsOverlay	234
spatialSimGP	155
spatzie	150
speckle	645
specL	362
SpeCond	361
Spectra	3955
SpectralTAD	320
SpectraQL	156
SpectriPy	116
SPEM	331
SPIA	1165
SPIAT	294
SPICEY	121
spicyR	469
SpidermiR	155
SpiecEasi	133
spikeLI	335
spiky	257
spillR	171
spkTools	360
splatter	842
splicegear	189
SpliceImpactR	46
splicelogic	43
spliceR	156
spliceSites	114
SpliceWiz	346
SplicingFactory	220
SplicingGraphs	447
SplineDV	164
splineTCDiffExpr	6
splineTimeR	340
SPLINTER	347
splots	419
SpNeigh	59
SPONGE	344
spoon	171
SpotClean	254
SPOTlight	589
spotSegmentation	114
SpotSweeper	316
spqn	275
SPsimSeq	298
SQLDataFrame	176
SQUADD	149
squallms	153
sRACIPE	319
SRAdb	774
sRAP	100
SRGnet	70
srnadiff	309
sscore	281
sscu	315
sSeq	368
ssize	355
sSNAPPY	263
SSPA	278
ssPATHS	261
ssrch	225
ssviz	333
StabMap	184
STADyUM	128
stageR	550
stam	52
STAN	191
standR	367
staRank	171
StarBioTrek	155
staRgate	81
Starr	201
STATegRa	470
StatescopeR	57
Statial	294
statTarget	460
STdeconvolve	105
stepNorm	354
stepwiseCM	83
stJoincount	202
stPipe	140
strandCheckR	304
Streamer	330
STRINGdb	3704
STROMA4	201
struct	400
Structstrings	346
structToolbox	306
StructuralVariantAnnotation	455
SubCellBarCode	263
subSeq	400
SUITOR	192
SummarizedBenchmark	197
SummarizedExperiment	50401
Summix	177
SuperCellCyto	126
supersigs	288
supraHex	367
surfaltr	276
SurfR	190
survClust	146
survcomp	1960
survtype	255
Sushi	236
sva	10375
svaNUMT	261
SVAPLSseq	92
svaRetro	258
SVM2CRM	102
SVMDO	192
SVP	192
SWATH2stats	302
SwathXtend	218
swfdr	320
SwimR	107
switchBox	310
switchde	316
synapsis	224
synapter	365
synergyfinder	437
SynExtend	308
synlet	258
SynMut	250
syntenet	330
systemPipeR	1783
systemPipeShiny	258
systemPipeTools	257
tadar	197
TADCompare	275
tanggle	280
TAPseq	301
target	298
TargetDecoy	241
TargetScore	325
TargetSearch	322
TarSeqQC	174
TaxSEA	165
TBSignatureProfiler	338
TCC	609
TCGAbiolinks	6244
TCGAbiolinksGUI	94
TCGAutils	1129
TCseq	709
TDARACNE	171
TDbasedUFE	195
TDbasedUFEadv	233
TEKRABber	238
TENET	170
TENxIO	408
tenXplore	329
TEQC	455
terapadog	159
ternarynet	291
terraTCGAdata	203
TFARM	261
TFBSTools	3953
TFEA.ChIP	417
TFHAZ	360
TFutils	382
TiDEomics	1
tidybulk	550
tidyCoverage	215
tidyexposomics	77
tidyFlowCore	151
tidyomics	179
tidyprint	57
tidysbml	149
tidySingleCellExperiment	530
tidySpatialExperiment	250
tidySummarizedExperiment	474
tidytof	61
tigre	449
TileDBArray	268
tilingArray	533
timecourse	550
timeOmics	284
timescape	229
TimeSeriesExperiment	99
TimiRGeN	103
TIN	362
TissueEnrich	433
TitanCNA	318
tkWidgets	2147
tLOH	228
TMixClust	303
TMSig	168
TNBC.CMS	104
TnT	331
TOAST	850
tofsims	106
tomoda	236
tomoseqr	223
TOP	214
ToPASeq	112
topconfects	378
topdownr	353
topGO	2687
toppgene	31
ToxicoGx	331
TPP	472
TPP2D	276
tpSVG	175
tracktables	480
trackViewer	1043
tradeSeq	1508
TraianProt	1
TrajectoryGeometry	178
TrajectoryUtils	3608
transcriptogramer	360
transcriptR	389
transformGamPoi	261
transite	275
tRanslatome	414
transmogR	185
transomics2cytoscape	228
TransView	390
TraRe	56
traseR	416
Travel	14
traviz	117
TreeAndLeaf	298
treeclimbR	183
treeio	29900
treekoR	291
TreeSummarizedExperiment	2861
TREG	239
trena	201
TReNA	7
Trendy	334
TRESS	280
tricycle	616
TrIdent	142
triform	116
trigger	238
trio	396
triplex	475
tripr	244
tRNA	378
tRNAdbImport	316
tRNAscanImport	333
TRONCO	475
TSAR	167
TSCAN	808
tscR	73
TSENAT	11
tspair	180
TSRchitect	168
TSSi	132
ttgsea	195
TTMap	325
TurboNorm	422
TVTB	414
tweeDEseq	409
twilight	482
twoddpcr	310
txcutr	239
txdbmaker	5765
tximeta	1942
tximport	5031
TxRegInfra	50
TypeInfo	218
UCell	2696
UCSC.utils	29611
Ularcirc	342
UMI4Cats	318
uncoverappLib	274
UNDO	354
unifiedWMWqPCR	305
UniProt.ws	1139
Uniquorn	354
universalmotif	1559
updateObject	237
UPDhmm	178
uSORT	377
VAExprs	219
VanillaICE	632
VarCon	271
variancePartition	2237
VariantAnnotation	9557
VariantExperiment	185
VariantFiltering	495
VariantTools	471
vasp	22
VaSP	308
vbmp	413
VCFArray	334
VDJdive	221
Vega	112
VegaMC	389
velociraptor	381
veloviz	195
VennDetail	436
VERSO	220
vidger	339
viper	1529
virtualArray	30
ViSEAGO	389
VisiumIO	333
visiumStitched	176
vissE	305
VISTA	49
vmrseq	164
Voyager	361
VplotR	307
vsclust	241
vsn	6733
vtpnet	359
vulcan	270
waddR	168
wateRmelon	1130
wavClusteR	397
waveTiling	169
wavFeatExt	40
weaver	326
webbioc	466
weitrix	349
widgetInvoke	23
widgetTools	2064
wiggleplotr	399
wpm	259
wppi	164
Wrench	2212
wSIR	1
XAItest	146
XBSeq	190
xCell2	284
XCIR	31
xcms	2678
xcore	252
XDE	515
XeniumIO	153
xenLite	171
Xeva	297
XINA	256
xmapbridge	301
xmapcore	27
XNAString	157
xps	173
XVector	60768
y2hStat	30
yamss	422
YAPSA	428
yaqcaffy	275
yarn	398
ZarrArray	122
zellkonverter	3604
zenith	357
zFPKM	303
zinbwave	1102
zitools	161
zlibbioc	22509
ZygosityPredictor	204