Bioconductor Developer Survey 2026 Now Open!

tRNA

This is the released version of tRNA; for the devel version, see tRNA.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Analyzing tRNA sequences and structures


Bioconductor version: Release (3.23)

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Author: Felix GM Ernst [aut, cre] ORCID iD ORCID: 0000-0001-5064-0928

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNA")):

Felix GM Ernst. tRNA: Analyzing tRNA sequences and structures. doi:10.18129/B9.bioc.tRNA, R package version 1.30.0, https://bioconductor.org/packages/tRNA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNA")
tRNA HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews Software, Visualization
Version1.30.0
In Bioconductor sinceBioC 3.8 (R-3.5) (8 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, Structstrings
Imports stringr, S4Vectors, methods, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales
System Requirements
URL
Bug Reportshttps://github.com/FelixErnst/tRNA/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
Linking To
Enhances
Depends On Me tRNAdbImport, tRNAscanImport
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNA_1.30.0.tar.gz
Windows Binary (x86_64) tRNA_1.30.0.zip
macOS Binary (big-sur-x86_64) tRNA_1.30.0.tgz
macOS Binary (sonoma-arm64) tRNA_1.30.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/tRNA
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/tRNA
Package Short Url https://bioconductor.org/packages/tRNA/
Package Downloads ReportDownload Stats