tuberculosis

This is the released version of tuberculosis; for the devel version, see tuberculosis.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

Tuberculosis Gene Expression Data for Machine Learning

Bioconductor version: Release (3.23)

The tuberculosis R/Bioconductor package features tuberculosis gene expression data for machine learning. All human samples from GEO that did not come from cell lines, were not taken postmortem, and did not feature recombination have been included. The package has more than 10,000 samples from both microarray and sequencing studies that have been processed from raw data through a hyper-standardized, reproducible pipeline.

Author: Lucas Schiffer [aut, cre] ORCID: 0000-0003-3628-0326

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("tuberculosis")):

Lucas Schiffer. tuberculosis: Tuberculosis Gene Expression Data for Machine Learning. doi:10.18129/B9.bioc.tuberculosis, R package version 1.18.0, https://bioconductor.org/packages/tuberculosis.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tuberculosis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tuberculosis")

tuberculosis	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, MicroarrayData, ReproducibleResearch, SequencingData
Version	1.18.0
In Bioconductor since	BioC 3.14 (R-4.1) (5 years)
License	Artistic-2.0
Depends	R (>= 4.1.0), SummarizedExperiment
Imports	AnnotationHub, ExperimentHub, S4Vectors, dplyr, magrittr, purrr, rlang, stringr, tibble, tidyr
System Requirements
URL	https://github.com/schifferl/tuberculosis
Bug Reports	https://github.com/schifferl/tuberculosis/issues

Suggests	BiocStyle, ggplot2, knitr, readr, rmarkdown, scater, usethis, utils
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tuberculosis_1.18.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tuberculosis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tuberculosis
Package Short Url	https://bioconductor.org/packages/tuberculosis/
Package Downloads Report	Download Stats