Functions that are needed by many other packages or which replace R functions.
Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon
| biocViews |
Infrastructure, Bioinformatics |
| Depends |
R (>= 2.7.0), methods, utils |
| Imports |
|
| Suggests |
tools, tkWidgets, ALL |
| System Requirements |
|
| License |
Artistic-2.0 |
| URL |
|
| Depends On Me |
ACME, affy, affycomp, affyContam, affycoretools, affylmGUI, affyPLM, affyQCReport, Agi4x44PreProcess, AgiMicroRna, ALL, altcdfenvs, annaffy, AnnotationDbi, ArrayExpress, arrayMvout, ArrayTools, beadarray, beadarraySNP, bgx, BicARE, BiocCaseStudies, bioDist, BioMVCClass, BioNet, Category, CCl4, cellHTS, cellHTS2, CGHbase, CGHcall, CGHregions, charm, clippda, CLL, clusterStab, CMA, codelink, colonCA, convert, copa, crlmm, davidTiling, ddCt, DESeq, DFP, DLBCL, dressCheck, dualKS, dyebias, EBarrays, edd, eisa, encoDnaseI, factDesign, fibroEset, flowClust, flowCore, frma, gaga, gaschYHS, GeneAnswers, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSpring, GeneTraffic, genomeIntervals, GEOquery, GGBase, GGdata, GGtools, golubEsets, goProfiles, GOstats, GSEABase, GSEAlm, harbChIP, HELP, hmyriB36, hopach, HTqPCR, humanStemCell, idiogram, iterativeBMA, Iyer517, kidpack, leeBamViews, LMGene, lumi, lumiBarnes, lungExpression, LVSmiRNA, macat, maDB, MAQCsubset, MAQCsubsetAFX, MAQCsubsetILM, maSigPro, MergeMaid, methylumi, Mfuzz, MiChip, MLInterfaces, Mulcom, multtest, mvoutData, Neve2006, oligoClasses, oneChannelGUI, ontoTools, OrderedList, OTUbase, OutlierD, PAnnBuilder, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, PGSEA, plgem, PLPE, prada, ProData, PROMISE, puma, pumadata, qpcrNorm, R453Plus1Toolbox, RbcBook1, rbsurv, reb, RefPlus, Resourcerer, rHVDM, Ringo, RMAGEML, Rmagpie, rMAT, RpsiXML, RTCA, RTools4TB, Rtreemix, safe, siggenes, simpleaffy, SNPchip, SpeCond, SpikeInSubset, spkTools, tigre, tilingArray, topGO, tspair, vsn, webbioc, XDE, yeastCC |
| Imports Me |
ABarray, aCGH, adSplit, affy, affyQCReport, AgiMicroRna, annotate, AnnotationDbi, annotationTools, arrayQualityMetrics, ArrayTools, attract, betr, biocViews, BioSeqClass, Biostrings, Category, CGHnormaliter, charm, ChromHeatMap, ConsensusClusterPlus, cycle, EBarrays, ecolitk, farms, flowCore, flowFlowJo, flowFP, flowMeans, flowStats, flowUtils, flowViz, frma, frmaTools, gcrma, genefilter, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSelector, GeneSpring, GeneTraffic, GEOsubmission, girafe, globaltest, GOstats, GSEABase, Harshlight, HEM, hopach, HTqPCR, imageHTS, lapmix, LiquidAssociation, lumi, maanova, makecdfenv, makePlatformDesign, maSigPro, mBPCR, MCRestimate, metaArray, methylumi, MiChip, MiPP, multiscan, oligo, OrderedList, PAnnBuilder, panp, PCpheno, plateCore, plier, ppiStats, prada, PROMISE, puma, qpgraph, R453Plus1Toolbox, rflowcyt, Rmagpie, rMAT, rnaSeqMap, Rtreemix, safe, SAGx, ShortRead, simpleaffy, SLGI, SNPchip, spkTools, splicegear, tigre, timecourse, topGO, twilight, webbioc, XDE |
| Suggests Me |
annotate, betr, BiocCaseStudies, biocDatasets, biocViews, BSgenome, Category, dyebiasexamples, estrogen, farms, genefilter, geneplotter, GlobalAncova, globaltest, hexbin, les, nem, pkgDepTools, ROC, tkWidgets, vbmp, widgetTools, yeastExpData, yeastRNASeq |
| Version |
2.10.0 |
| Since |
Bioconductor 1.6 (R-2.1) or earlier |
