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Ramos, M, et al. (2017) Software for the Integration of Multiomics Experiments in Bioconductor Cancer Research 77:e39-e42. doi:10.1158/0008-5472.CAN-17-0344
Pasolli, E, et al. (2017) Accessible, curated metagenomic data through ExperimentHub Nature Methods 14, 1023–1024. doi:10.1038/nmeth.4468
Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration).
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, et al. (2013) Software for Computing and Annotating Genomic Ranges. PLoS Comput Biol 9(8): e1003118. doi: 10.1371/journal.pcbi.1003118
Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x.

Recent

20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2018-10-15T21:00:10-04:00.

Poulard C, Baulu E, Lee BH, Pufall MA, Stallcup MR. Increasing G9a automethylation sensitizes B acute lymphoblastic leukemia cells to glucocorticoid-induced death Cell Death Dis, 9(10), pp. 1038. doi:10.1038/s41419-018-1110-z (10 October 2018)
Maes K, Boeckx B, Vlummens P, De Veirman K, Menu E, Vanderkerken K, Lambrechts D, De Bruyne E. The genetic landscape of 5T models for multiple myeloma Sci Rep, 8, pp. 15030. doi:10.1038/s41598-018-33396-w (9 October 2018)
Singh RK, Maurya JP, Azeez A, Miskolczi P, Tylewicz S, Stojkovič K, Delhomme N, Busov V, Bhalerao RP. A genetic network mediating the control of bud break in hybrid aspen Nat Commun, 9, pp. 4173. doi:10.1038/s41467-018-06696-y (9 October 2018)
Martinez-Soria N, McKenzie L, Draper J, Ptasinska A, Issa H, Potluri S, Blair HJ, Pickin A, Isa A, Chin PS, Tirtakusuma R, Coleman D, Nakjang S, Assi S, Forster V, Reza M, Law E, Berry P, Mueller D, Elder A, Bomken SN, Pal D, Allan JM, Veal GJ, Cockerill PN, Wichmann C, Vormoor J, Lacaud G, Bonifer C, Heidenreich O. The Oncogenic Transcription Factor RUNX1/ETO Corrupts Cell Cycle Regulation to Drive Leukemic Transformation Cancer Cell, 34(4), pp. 626-642.e8. doi:10.1016/j.ccell.2018.08.015 (8 October 2018)
Rotolo A, Caputo VS, Holubova M, Baxan N, Dubois O, Chaudhry MS, Xiao X, Goudevenou K, Pitcher DS, Petevi K, Kachramanoglou C, Iles S, Naresh K, Maher J, Karadimitris A. Enhanced Anti-lymphoma Activity of CAR19-iNKT Cells Underpinned by Dual CD19 and CD1d Targeting Cancer Cell, 34(4), pp. 596-610.e11. doi:10.1016/j.ccell.2018.08.017 (8 October 2018)
Mattila J, Kokki K, Hietakangas V, Boutros M. Stem Cell Intrinsic Hexosamine Metabolism Regulates Intestinal Adaptation to Nutrient Content Dev Cell, 47(1), pp. 112-121.e3. doi:10.1016/j.devcel.2018.08.011 (8 October 2018)
Smolko AE, Shapiro-Kulnane L, Salz HK. The H3K9 methyltransferase SETDB1 maintains female identity in Drosophila germ cells Nat Commun, 9, pp. 4155. doi:10.1038/s41467-018-06697-x (8 October 2018)
O’Hara E, Kelly A, McCabe MS, Kenny DA, Guan LL, Waters SM. Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning Sci Rep, 8, pp. 14901. doi:10.1038/s41598-018-33122-6 (8 October 2018)
Han HW, Hahn S, Jeong HY, Jee JH, Nam MO, Kim HK, Lee DH, Lee SY, Choi DK, Yu JH, Min SH, Yoo J. LINCS L1000 dataset-based repositioning of CGP-60474 as a highly potent anti-endotoxemic agent Sci Rep, 8, pp. 14969. doi:10.1038/s41598-018-33039-0 (8 October 2018)
Bui LT, Ivers NA, Ragsdale EJ. A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode Pristionchus pacificus Nat Commun, 9, pp. 4119. doi:10.1038/s41467-018-05612-8 (8 October 2018)
Marinelarena A, Bhattacharya P, Kumar P, Maker AV, Prabhakar BS. Identification of a Novel OX40L+ Dendritic Cell Subset That Selectively Expands Regulatory T cells Sci Rep, 8, pp. 14940. doi:10.1038/s41598-018-33307-z (8 October 2018)
Navarro-Barriuso J, Mansilla MJ, Naranjo-Gómez M, Sánchez-Pla A, Quirant-Sánchez B, Teniente-Serra A, Ramo-Tello C, Martínez-Cáceres EM. Comparative transcriptomic profile of tolerogenic dendritic cells differentiated with vitamin D3, dexamethasone and rapamycin Sci Rep, 8, pp. 14985. doi:10.1038/s41598-018-33248-7 (8 October 2018)
Licciardi F, Lhakhang T, Kramer YG, Zhang Y, Heguy A, Tsirigos A. Human blastocysts of normal and abnormal karyotypes display distinct transcriptome profiles Sci Rep, 8, pp. 14906. doi:10.1038/s41598-018-33279-0 (8 October 2018)
Zheng X, Wu K, Liao S, Pan Y, Sun Y, Chen X, Zhang Y, Xia S, Hu Y, Zhang J. MicroRNA-transcription factor network analysis reveals miRNAs cooperatively suppress RORA in oral squamous cell carcinoma Oncogenesis, 7(10), pp. 79. doi:10.1038/s41389-018-0089-8 (8 October 2018)
Inoue K, Deng Z, Chen Y, Giannopoulou E, Xu R, Gong S, Greenblatt MB, Mangala LS, Lopez-Berestein G, Kirsch DG, Sood AK, Zhao L, Zhao B. Bone protection by inhibition of microRNA-182 Nat Commun, 9, pp. 4108. doi:10.1038/s41467-018-06446-0 (5 October 2018)
Hwang JY, Lee HJ, Go MJ, Jang HB, Choi NH, Bae JB, Castillo-Fernandez JE, Bell JT, Spector TD, Lee HJ, Kim BJ. Genome-wide methylation analysis identifies ELOVL5 as an epigenetic biomarker for the risk of type 2 diabetes mellitus Sci Rep, 8, pp. 14862. doi:10.1038/s41598-018-33238-9 (5 October 2018)
Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M. Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species Commun Biol, 1, pp. 162. doi:10.1038/s42003-018-0171-y (5 October 2018)
Tiwari N, Pataskar A, Péron S, Thakurela S, Sahu SK, Figueres-Oñate M, Marichal N, López-Mascaraque L, Tiwari VK, Berninger B. Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes Cell Stem Cell, 23(4), pp. 557-571.e8. doi:10.1016/j.stem.2018.09.008 (4 October 2018)
Said R, Garcia-Mayea Y, Trabelsi N, Setti Boubaker N, Mir C, Blel A, Ati N, Paciucci R, Hernández-Losa J, Rammeh S, Derouiche A, Chebil M, LLeonart ME, Ouerhani S. Expression patterns and bioinformatic analysis of miR-1260a and miR-1274a in Prostate Cancer Tunisian patients. Mol Biol Rep. doi:10.1007/s11033-018-4399-x (24 September 2018)
Sun S, Wang Y, Wu Y, Gao Y, Li Q, Abdulrahman AA, Liu XF, Ji GQ, Gao J, Li L, Wan FP, Li YQ, Gao DS. Identification of COL1A1 as an invasion‑related gene in malignant astrocytoma. Int J Oncol. doi:10.3892/ijo.2018.4568 (21 September 2018)

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