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Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, et al. (2013) Software for Computing and Annotating Genomic Ranges. PLoS Comput Biol 9(8): e1003118. doi: 10.1371/journal.pcbi.1003118
Lawrence, M, and Morgan, M. (2014) Scalable Genomics with R and Bioconductor Statistical Science, Vol. 29, No. 2, 214-226 10.1214/14-STS476

Recent

20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2014-12-19T18:50:09-08:00.

Joo JY, Choi HW, Kim MJ, Zaehres H, Tapia N, Stehling M, Jung KS, Tae J, Schöler HR. Establishment of a primed pluripotent epiblast stem cell in FGF4-based conditions Sci Rep, 4, pp. 7477. doi:10.1038/srep07477 (17 December 2014)
Acerbi E, Zelante T, Narang V, Stella F. Gene network inference using continuous time Bayesian networks: a comparative study and application to Th17 cell differentiation BMC Bioinformatics, 15(1), pp. 387. doi:10.1186/s12859-014-0387-x (11 December 2014)
Väremo L, Gatto F, Nielsen J. Kiwi: a tool for integration and visualization of network topology and gene-set analysis BMC Bioinformatics, 15(1), pp. 408. doi:10.1186/s12859-014-0408-9 (11 December 2014)
Knight JM, Ivanov I, Dougherty ER. MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification BMC Bioinformatics, 15(1), pp. 401. doi:10.1186/s12859-014-0401-3 (10 December 2014)
Williams TC, Blackman ER, Morrison SS, Gibas CJ, Oliver JD. Transcriptome Sequencing Reveals the Virulence and Environmental Genetic Programs of Vibrio vulnificus Exposed to Host and Estuarine Conditions PLoS One, 9(12), pp. e114376. doi:10.1371/journal.pone.0114376 (9 December 2014)
Herdegen S, Conte C, Kamal S, Calin-Jageman RJ, Calin-Jageman IE. Immediate and Persistent Transcriptional Correlates of Long-Term Sensitization Training at Different CNS Loci in Aplysia californica PLoS One, 9(12), pp. e114481. doi:10.1371/journal.pone.0114481 (8 December 2014)
Dhahbi JM, Spindler SR, Atamna H, Boffelli D, Martin DI. Deep Sequencing of Serum Small RNAs Identifies Patterns of 5′ tRNA Half and YRNA Fragment Expression Associated with Breast Cancer Biomark Cancer, 6, pp. 37-47. doi:10.4137/BIC.S20764 (8 December 2014)
Solin SL, Wang Y, Mauldin J, Schultz LE, Lincow DE, Brodskiy PA, Jones CA, Syrkin-Nikolau J, Linn JM, Essner JJ, Hostetter JM, Whitley EM, Cameron JD, Chou HH, Severin AJ, Sakaguchi DS, McGrail M. Molecular and Cellular Characterization of a Zebrafish Optic Pathway Tumor Line Implicates Glia-Derived Progenitors in Tumorigenesis PLoS One, 9(12), pp. e114888. doi:10.1371/journal.pone.0114888 (8 December 2014)
Mal C, Aftabuddin M, Kundu S. No3CoGP: non-conserved and conserved coexpressed gene pairs. BMC Res Notes, 7(1), pp. 886. doi:10.1186/1756-0500-7-886 (8 December 2014)
Visconte V, Tabarroki A, Zhang L, Parker Y, Hasrouni E, Mahfouz R, Isono K, Koseki H, Sekeres MA, Saunthararajah Y, Barnard J, Lindner D, Rogers HJ, Tiu RV. Splicing factor 3b subunit 1 (Sf3b1) haploinsufficient mice display features of low risk Myelodysplastic syndromes with ring sideroblasts J Hematol Oncol, 7(1), pp. 89. doi:10.1186/s13045-014-0089-x (7 December 2014)
Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol, 15(12), pp. 550. doi:10.1186/PREACCEPT-8897612761307401 (5 December 2014)
Almelli T, Nuel G, Bischoff E, Aubouy A, Elati M, Wang CW, Dillies MA, Coppée JY, Ayissi GN, Basco LK, Rogier C, Ndam NT, Deloron P, Tahar R. Differences in Gene Transcriptomic Pattern of Plasmodium falciparum in Children with Cerebral Malaria and Asymptomatic Carriers PLoS One, 9(12), pp. e114401. doi:10.1371/journal.pone.0114401 (5 December 2014)
Yang L, Ainali C, Tsoka S, Papageorgiou LG. Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework BMC Bioinformatics, 15(1), pp. 390. doi:10.1186/s12859-014-0390-2 (5 December 2014)
Rahmatallah Y, Emmert-Streib F, Glazko G. Comparative evaluation of gene set analysis approaches for RNA-Seq data BMC Bioinformatics, 15(1), pp. 397. doi:10.1186/s12859-014-0397-8 (5 December 2014)
Ng SB, Ohshima K, Selvarajan V, Huang G, Choo SN, Miyoshi H, Wang S, Chua HC, Yeoh AE, Quah TC, Koh LP, Tan PL, Chng WJ. Prognostic implication of morphology, cyclinE2 and proliferation in EBV-associated T/NK lymphoproliferative disease in non-immunocompromised hosts Orphanet J Rare Dis, 9(1), pp. 165. doi:10.1186/s13023-014-0165-x (5 December 2014)
Wallace JG, Bradbury PJ, Zhang N, Gibon Y, Stitt M, Buckler ES. Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize PLoS Genet, 10(12), pp. e1004845. doi:10.1371/journal.pgen.1004845 (4 December 2014)
Stankiewicz AM, Goscik J, Swiergiel AH, Majewska A, Wieczorek M, Juszczak GR, Lisowski P. Social stress increases expression of hemoglobin genes in mouse prefrontal cortex BMC Neurosci, 15(1), pp. 130. doi:10.1186/s12868-014-0130-6 (4 December 2014)
Liu HQ, Li Y, Irwin DM, Zhang YP, Wu DD. Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster BMC Evol Biol, 14(1), pp. 241. doi:10.1186/s12862-014-0241-9 (4 December 2014)
Wang Y, Thilmony R, Zhao Y, Chen G, Gu YQ. AIM: a comprehensive Arabidopsis interactome module database and related interologs in plants Database (Oxford), 2014, pp. bau117. doi:10.1093/database/bau117 (4 December 2014)
Ramsey SA, Vengrenyuk Y, Menon P, Podolsky I, Feig JE, Aderem A, Fisher EA, Gold ES. Epigenome-Guided Analysis of the Transcriptome of Plaque Macrophages during Atherosclerosis Regression Reveals Activation of the Wnt Signaling Pathway PLoS Genet, 10(12), pp. e1004828. doi:10.1371/journal.pgen.1004828 (4 December 2014)

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