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makecdfenv

CDF Environment Maker

Bioconductor version: 3.23 · Package version: 1.88.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

DOI: 10.18129/B9.bioc.makecdfenv

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("makecdfenv")

Details

MaintainerJames W. MacDonald <jmacdon@u.washington.edu>
AuthorRafael A. Irizarry <rafa@jhu.edu>, Laurent Gautier <laurent@cbs.dtu.dk>, Wolfgang Huber <w.huber@dkfz-heidelberg.de>, Ben Bolstad <bmb@bmbolstad.com>
LicenseGPL (>= 2)
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDataImport, OneChannel, Preprocessing, Software
Package Short Url https://bioconductor.org/packages/makecdfenv/

Citation

From within R, enter citation("makecdfenv"):

Rafael A. Irizarry, Laurent Gautier, Wolfgang Huber, Ben Bolstad. makecdfenv: CDF Environment Maker. doi:10.18129/B9.bioc.makecdfenv, R package version 1.88.0, https://bioconductor.org/packages/makecdfenv.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagemakecdfenv_1.88.0.tar.gz
Windows binary (x86_64)makecdfenv_1.88.0.zip
macOS binary (arm64)makecdfenv_1.88.0.tgz
macOS binary (x86_64)makecdfenv_1.88.0.tgz
Dependencies

Depends: R (>= 2.6.0), affyio

Imports: Biobase, affy, methods, stats, utils

Reverse dependencies

Depends On Me (1): altcdfenvs