Community Contributed Help Resources
A small selection of the many resources available for learning Bioconductor, contributed by members of the Bioconductor community.
- Resources from MOOC: PH525x Data Analysis for Genomics -- book and labs
- Bioconductor on YouTube
- Video Lectures by Rafael Irizarry and guests
- R/Bioconductor Notes by Thomas Girke
- Using Bioconductor to Analyze your 23andme Data by Vince Buffalo
- Bioconductor Code Search by Itoshi NIKAIDO
- R/Bioconductor Blog By Sean Davis
Common Bioconductor workflows include:
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- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
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