DelayedMatrixStats

DOI: 10.18129/B9.bioc.DelayedMatrixStats    

This is the development version of DelayedMatrixStats; for the stable release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: Development (3.8)

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

 

HTML R Script Overview of DelayedMatrixStats
PDF   Reference Manual
Text   LICENSE

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.3.9
License MIT + file LICENSE
Depends DelayedArray(>= 0.7.37)
Imports methods, matrixStats (>= 0.53.1), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel
LinkingTo
Suggests testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem
SystemRequirements
Enhances
URL https://github.com/PeteHaitch/DelayedMatrixStats
BugReports https://github.com/PeteHaitch/DelayedMatrixStats/issues
Depends On Me
Imports Me bsseq, dmrseq, minfi, scater, scran
Suggests Me DelayedArray
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DelayedMatrixStats_1.3.9.tar.gz
Windows Binary DelayedMatrixStats_1.3.9.zip
Mac OS X 10.11 (El Capitan) DelayedMatrixStats_1.3.9.tgz
Source Repository git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Package Short Url http://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: