To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSRI")

In most cases, you don't need to download the package archive at all.

GSRI

This is the development version of GSRI; for the stable release version, see GSRI.

Gene Set Regulation Index

Bioconductor version: Development (3.0)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at embl.de>

To install this package, start R and enter:

Citation (from within R, enter citation("GSRI")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("GSRI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

 

PDF R Script Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription
Version 2.13.2
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-3
Depends R (>= 2.14.2), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests limma, hgu95av2.db
System Requirements
URL http://julian-gehring.github.com/GSRI/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSRI_2.13.2.tar.gz
Windows Binary GSRI_2.13.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSRI_2.13.2.tgz
Mac OS X 10.9 (Mavericks) GSRI_2.13.2.tgz
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