HiTC

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: Development (3.0)

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HiTC")

To cite this package in a publication, start R and enter:

    citation("HiTC")

Documentation

PDF R Script Hight-Throughput Chromosome Conformation Capture analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Sequencing, Software
Version 1.9.1
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix
Suggests BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source HiTC_1.9.1.tar.gz
Windows Binary HiTC_1.9.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HiTC_1.9.1.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center