To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")

In most cases, you don't need to download the package archive at all.

RUVSeq

 

   

This is the development version of RUVSeq; for the stable release version, see RUVSeq.

Remove Unwanted Variation from RNA-Seq Data

Bioconductor version: Development (3.3)

This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.

Author: Davide Risso [aut, cre, cph], Sandrine Dudoit [aut], Lorena Pantano [ctb], Kamil Slowikowski [ctb]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("RUVSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVSeq")

 

PDF RUVSeq: Remove Unwanted Variation from RNA-Seq Data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Preprocessing, RNASeq, Software
Version 1.5.2
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends Biobase, EDASeq(>= 1.99.1), edgeR
Imports methods, MASS
LinkingTo
Suggests BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
SystemRequirements
Enhances
URL https://github.com/drisso/RUVSeq
BugReports https://github.com/drisso/RUVSeq/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RUVSeq_1.5.2.tar.gz
Windows Binary RUVSeq_1.5.2.zip
Mac OS X 10.6 (Snow Leopard) RUVSeq_1.3.2.tgz
Mac OS X 10.9 (Mavericks) RUVSeq_1.5.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RUVSeq
Package Short Url http://bioconductor.org/packages/RUVSeq/
Package Downloads Report Download Stats

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