ReactomePA

Reactome Pathway Analysis

Bioconductor version: Development (3.0)

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReactomePA")

To cite this package in a publication, start R and enter:

    citation("ReactomePA")

Documentation

PDF R Script ReactomePA - an R package for Reactome Pathway Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Pathways, Software, Visualization
Version 1.9.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends
Imports methods, AnnotationDbi, reactome.db, org.Hs.eg.db, DOSE, stats4, plyr, igraph, qvalue, graphics, graphite
Suggests clusterProfiler, GOSemSim, knitr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me ChIPseeker, clusterProfiler, DOSE

Package Downloads

Package Source ReactomePA_1.9.0.tar.gz
Windows Binary ReactomePA_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ReactomePA_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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