tweeDEseq

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: Development (3.0)

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("tweeDEseq")

To cite this package in a publication, start R and enter:

    citation("tweeDEseq")

Documentation

PDF R Script tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF   Reference Manual

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
Suggests tweeDEseqCountData, xtable
System Requirements
URL http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source tweeDEseq_1.11.0.tar.gz
Windows Binary tweeDEseq_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) tweeDEseq_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
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