AnVIL

DOI: 10.18129/B9.bioc.AnVIL    

Bioconductor on the AnVIL compute environment

Bioconductor version: Release (3.11)

The AnVIL is cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides end-user and devloper functionality. For the end-user, AnVIL provides fast binary package installation, utitlities for working with Terra / AnVIL table and data resources, and convenient functions for file movement to and from Google cloud storage. For developers, AnVIL provides programatic access to the Terra, Leonardo, Dockstore, and Gen3 RESTful programming interface, including helper functions to transform JSON responses to more formats more amenable to manipulation in R.

Author: Martin Morgan [aut, cre], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Marcel Ramos [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("AnVIL")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVIL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVIL")

 

HTML R Script Dockstore and Bioconductor for AnVIL
HTML R Script Introduction to the AnVIL package
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.0.3
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0), dplyr
Imports stats, utils, methods, futile.logger, jsonlite, httr, curl, rapiclient (>= 0.1.3), tibble, BiocManager
LinkingTo
Suggests knitr, testthat, withr, readr
SystemRequirements
Enhances
URL
Depends On Me cBioPortalData
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVIL_1.0.3.tar.gz
Windows Binary AnVIL_1.0.3.zip
macOS 10.13 (High Sierra) AnVIL_1.0.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVIL
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVIL
Package Short Url https://bioconductor.org/packages/AnVIL/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: