AnnotationDbi

Annotation Database Interface

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author	Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li
Maintainer	Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AnnotationDbi")

AnnotationDbi: How to use the ".db" annotation packages	PDF	R Script
Creating probe packages	PDF	R Script
SQLForge: An easy way to create a new annotation package with a standard database schema.	PDF	R Script
Reference Manual

biocViews	Annotation , Infrastructure
Depends	R , methods , utils , Biobase
Imports	methods , utils , Biobase , DBI , RSQLite
Suggests	DBI , RSQLite , hgu95av2.db , GO.db , human.db0 , hgu95av2cdf , affy , KEGG.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	Category , ChromHeatMap , GOSemSim , PAnnBuilder , PGSEA , Resourcerer , RpsiXML , annotate , eisa , gene2pathway , goProfiles , matchprobes , oneChannelGUI , ontoTools , pathRender , qpgraph , topGO
Imports Me	Category , ChromHeatMap , CoCiteStats , ExpressionView , GGBase , GGtools , GOstats , GSEABase , GlobalAncova , PAnnBuilder , PCpheno , SLGI , ScISI , adSplit , affycoretools , annaffy , annotate , domainsignatures , genefilter , geneplotter , globaltest , goseq , keggorthology , qpgraph , safe , tigre , topGO
Suggests Me	BiocCaseStudies , ExpressionView , GeneAnswers , GeneRegionScan , sigPathway