AnnotationDbi

Annotation Database Interface

Bioconductor version: Release (2.9)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Bioconductor Package Maintainer

To install this package, start R and enter:

    source("http:///biocLite.R")
    biocLite("AnnotationDbi")

To cite this package in a publication, start R and enter:

    citation("AnnotationDbi")

PDF	R Script	AnnotationDbi: How to use the ".db" annotation packages
PDF	R Script	Creating an annotation package with a new database schema
PDF	R Script	Creating probe packages
PDF	R Script	SQLForge: An easy way to create a new annotation package with a standard database schema.
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Infrastructure
Depends	R, methods, utils, Biobase
Imports	methods, utils, Biobase, DBI, RSQLite, IRanges
Suggests	DBI, RSQLite, hgu95av2.db, GO.db, human.db0, hgu95av2cdf, affy, KEGG.db, XML, RCurl, RUnit
System Requirements
License	Artistic-2.0
URL
Depends On Me	AnnotationFuncs, Category, ChromHeatMap, GOFunction, GenomicFeatures, MLP, PAnnBuilder, PGSEA, Resourcerer, RpsiXML, VariantAnnotation, a4Base, a4Preproc, annotate, attract, eisa, gene2pathway, goProfiles, oneChannelGUI, ontoTools, pathRender, topGO
Imports Me	BioNet, Category, ChIPpeakAnno, ChromHeatMap, CoCiteStats, DOSE, ExpressionView, GGBase, GGtools, GOFunction, GOSemSim, GOstats, GSEABase, GlobalAncova, HTSanalyzeR, PAnnBuilder, PCpheno, PatientGeneSets, REDseq, SLGI, ScISI, VariantAnnotation, adSplit, affycoretools, annaffy, annotate, attract, beadarray, clusterProfiler, domainsignatures, genefilter, geneplotter, globaltest, goTools, goseq, graphite, keggorthology, lumi, methylumi, phenoTest, qpgraph, safe, tigre, topGO
Suggests Me	BiocCaseStudies, ExpressionView, GeneAnswers, GeneRegionScan, MmPalateMiRNA, sigPathway
Version	1.16.11
Since	Bioconductor 2.1 (R-2.6)

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