BioCor

DOI: 10.18129/B9.bioc.BioCor    

Functional similarities

Bioconductor version: Release (3.7)

Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...

Author: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Maintainer: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Citation (from within R, enter citation("BioCor")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioCor")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioCor")

 

HTML R Script About BioCor
HTML R Script Advanced usage of BioCor
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, GeneExpression, Network, NetworkEnrichment, Pathways, Software, StatisticalMethod, SystemsBiology
Version 1.4.0
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.4.0)
Imports BiocParallel, Matrix, GSEABase
LinkingTo
Suggests reactome.db, org.Hs.eg.db, WGCNA, methods, GOSemSim, testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot, targetscan.Hs.eg.db, Hmisc
SystemRequirements
Enhances
URL https://github.com/llrs/BioCor/
BugReports https://github.com/llrs/BioCor/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioCor_1.4.0.tar.gz
Windows Binary BioCor_1.4.0.zip
Mac OS X 10.11 (El Capitan) BioCor_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioCor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioCor
Package Short Url http://bioconductor.org/packages/BioCor/
Package Downloads Report Download Stats

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