To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

In most cases, you don't need to download the package archive at all.

CNEr

 

   

CNE Detection and Visualization

Bioconductor version: Release (3.3)

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Author: Ge Tan <ge.tan09 at imperial.ac.uk>

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Citation (from within R, enter citation("CNEr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

Documentation

HTML R Script CNE identification and visualisation
HTML R Script Pairwise whole genome alignment
PDF   Reference Manual

Details

biocViews DataImport, GeneRegulation, Software, Visualization
Version 1.8.3
In Bioconductor since BioC 2.14 (R-3.1) (2.5 years)
License GPL-2 | file LICENSE
Depends R (>= 3.2.2)
Imports Biostrings(>= 2.33.4), RSQLite (>= 0.11.4), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.23.16), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), DBI (>= 0.2-7), GenomicAlignments(>= 1.1.9), methods, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel
LinkingTo S4Vectors, IRanges, XVector
Suggests Gviz(>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/ge11232002/CNEr
BugReports https://github.com/ge11232002/CNEr/issues
Depends On Me
Imports Me TFBSTools
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNEr_1.8.3.tar.gz
Windows Binary CNEr_1.8.3.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) CNEr_1.8.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CNEr/tree/release-3.3
Package Short Url http://bioconductor.org/packages/CNEr/
Package Downloads Report Download Stats

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