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MuData

Serialization for MultiAssayExperiment Objects


Bioconductor version: Release (3.18)

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Author: Danila Bredikhin [aut, cre] , Ilia Kats [aut]

Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>

Citation (from within R, enter citation("MuData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MuData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MuData")
Blood CITE-seq with MuData HTML R Script
Cord Blood CITE-seq with MuData HTML R Script
Getting started with MuDataMae HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Software
Version 1.6.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License GPL-3
Depends Matrix, S4Vectors, rhdf5
Imports methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray
System Requirements
URL https://github.com/ilia-kats/MuData
Bug Reports https://github.com/ilia-kats/MuData/issues
See More
Suggests HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MuData_1.6.0.tar.gz
Windows Binary MuData_1.6.0.zip (64-bit only)
macOS Binary (x86_64) MuData_1.6.0.tgz
macOS Binary (arm64) MuData_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MuData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MuData
Bioc Package Browser https://code.bioconductor.org/browse/MuData/
Package Short Url https://bioconductor.org/packages/MuData/
Package Downloads Report Download Stats