MultiDataSet

DOI: 10.18129/B9.bioc.MultiDataSet    

Implementation of MultiDataSet and ResultSet

Bioconductor version: Release (3.7)

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>

Citation (from within R, enter citation("MultiDataSet")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiDataSet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiDataSet")

 

HTML R Script Adding a new type of data to MultiDataSet objects
HTML R Script Introduction to MultiDataSet
HTML R Script Using MultiDataSet with third party R packages
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataRepresentation, Software
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License file LICENSE
Depends R (>= 3.3), Biobase
Imports BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma
LinkingTo
Suggests brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment
SystemRequirements
Enhances
URL
Depends On Me MEAL
Imports Me omicRexposome
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiDataSet_1.8.0.tar.gz
Windows Binary MultiDataSet_1.8.0.zip
Mac OS X 10.11 (El Capitan) MultiDataSet_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiDataSet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiDataSet
Package Short Url http://bioconductor.org/packages/MultiDataSet/
Package Downloads Report Download Stats

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