SeqVarTools

Tools for variant data

Bioconductor version: Release (2.14)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SeqVarTools")

To cite this package in a publication, start R and enter:

    citation("SeqVarTools")

Documentation

PDF R Script Introduction to SeqVarTools
PDF   Reference Manual

Details

biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends SeqArray(>= 1.1.1)
Imports methods, GenomicRanges, IRanges, GWASExactHW
Suggests BiocGenerics, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source SeqVarTools_1.2.0.tar.gz
Windows Binary SeqVarTools_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SeqVarTools_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
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