TRESS

DOI: 10.18129/B9.bioc.TRESS    

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: Release (3.14)

This package is devoted to analyzing MeRIP-seq data. Current functionality is for detection of transcriptome-wide m6A methylation regions. The method is based on hierarchical negative binomial models.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>

Citation (from within R, enter citation("TRESS")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRESS")

 

HTML R Script The TRESS User's Guide
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Epigenetics, PeakDetection, RNASeq, Software
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License GPL-3 + file LICENSE
Depends R (>= 4.1.0), parallel, S4Vectors
Imports utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TRESS_1.0.0.tar.gz
Windows Binary TRESS_1.0.0.zip
macOS 10.13 (High Sierra) TRESS_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TRESS
Package Short Url https://bioconductor.org/packages/TRESS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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