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A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: Release (3.0)

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf <rscharpf at>, Kevin Scharpf, and Ingo Ruczinski <ingo at>

Maintainer: Robert Scharpf <rscharpf at>

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PDF R Script crlmmDownstream
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biocViews CopyNumberVariation, Software
Version 1.28.5
In Bioconductor since BioC 2.1 (R-2.6)
License LGPL-2
Depends R (>= 3.0.0), GenomicRanges
Imports Biobase, oligoClasses(>= 1.24.0), IRanges(>= 1.14.0), S4Vectors, foreach, matrixStats, data.table, grid, lattice, methods, GenomeInfoDb, crlmm
Suggests RUnit, SNPchip, human610quadv1bCrlmm, BSgenome.Hsapiens.UCSC.hg18, ArrayTV
System Requirements
Depends On Me
Imports Me MinimumDistance
Suggests Me

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