geneRecommender

DOI: 10.18129/B9.bioc.geneRecommender    

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: Release (3.8)

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>

Maintainer: Greg Hather <ghather at stat.berkeley.edu>

Citation (from within R, enter citation("geneRecommender")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("geneRecommender", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneRecommender")

 

PDF R Script Using the geneRecommender Package
PDF   Reference Manual

Details

biocViews Clustering, Microarray, Software
Version 1.54.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License GPL (>= 2)
Depends R (>= 1.8.0), Biobase(>= 1.4.22), methods
Imports Biobase, methods, stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneRecommender_1.54.0.tar.gz
Windows Binary geneRecommender_1.54.0.zip
Mac OS X 10.11 (El Capitan) geneRecommender_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/geneRecommender
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneRecommender
Package Short Url http://bioconductor.org/packages/geneRecommender/
Package Downloads Report Download Stats

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