hmdbQuery

DOI: 10.18129/B9.bioc.hmdbQuery    

utilities for exploration of human metabolome database

Bioconductor version: Release (3.8)

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("hmdbQuery")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("hmdbQuery", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hmdbQuery")

 

HTML R Script hmdbQuery: working with Human Metabolome Database (hmdb.ca)
PDF   Reference Manual

Details

biocViews Infrastructure, Metabolomics, Software
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.5), XML
Imports S4Vectors, methods, utils
LinkingTo
Suggests knitr, annotate, gwascat, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hmdbQuery_1.2.0.tar.gz
Windows Binary hmdbQuery_1.2.0.zip
Mac OS X 10.11 (El Capitan) hmdbQuery_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hmdbQuery
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hmdbQuery
Package Short Url http://bioconductor.org/packages/hmdbQuery/
Package Downloads Report Download Stats

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