hypeR

DOI: 10.18129/B9.bioc.hypeR    

Hyper Enrichment

Bioconductor version: Release (3.10)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

 

HTML R Script hypeR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.2.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports ggplot2, ggforce, DT, R6, magrittr, dplyr, purrr, stats, scales, rlang, openxlsx, msigdbr, kableExtra, rmarkdown, gh, igraph, visNetwork
LinkingTo
Suggests devtools, testthat, knitr, httr
SystemRequirements
Enhances
URL https://github.com/montilab/hypeR
BugReports https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_1.2.0.tar.gz
Windows Binary hypeR_1.2.0.zip
Mac OS X 10.11 (El Capitan) hypeR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Package Short Url https://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats

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