To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iASeq")

In most cases, you don't need to download the package archive at all.

iASeq

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: Release (2.14)

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("iASeq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iASeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

 

PDF R Script iASeq Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, RNASeq, SNP, Software
Version 1.8.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.14.1)
Imports graphics, grDevices
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source iASeq_1.8.0.tar.gz
Windows Binary iASeq_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) iASeq_1.8.0.tgz
Mac OS X 10.9 (Mavericks) iASeq_1.8.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center