To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("logicFS")

In most cases, you don't need to download the package archive at all.

logicFS

Identification of SNP Interactions

Bioconductor version: Release (2.14)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("logicFS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")

 

PDF R Script logicFS Manual
PDF   Reference Manual

Details

biocViews Classification, Genetics, SNP, Software
Version 1.34.0
In Bioconductor since BioC 1.8 (R-2.3)
License LGPL (>= 2)
Depends LogicReg, mcbiopi
Imports
Suggests genefilter, siggenes
System Requirements
URL
Depends On Me
Imports Me
Suggests Me trio

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source logicFS_1.34.0.tar.gz
Windows Binary logicFS_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) logicFS_1.34.0.tgz
Mac OS X 10.9 (Mavericks) logicFS_1.34.0.tgz
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