miRBaseConverter

DOI: 10.18129/B9.bioc.miRBaseConverter    

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: Release (3.10)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("miRBaseConverter")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")

 

HTML R Script miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, miRNA
Version 1.10.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports stats
LinkingTo
Suggests BiocGenerics, RUnit, knitr, rtracklayer, utils
SystemRequirements
Enhances
URL https://github.com/taoshengxu/miRBaseConverter
BugReports https://github.com/taoshengxu/miRBaseConverter/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRBaseConverter_1.10.0.tar.gz
Windows Binary miRBaseConverter_1.10.0.zip
Mac OS X 10.11 (El Capitan) miRBaseConverter_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url https://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: