miRBaseConverter

DOI: 10.18129/B9.bioc.miRBaseConverter    

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: Release (3.7)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("miRBaseConverter")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("miRBaseConverter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")

 

HTML R Script miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, miRNA
Version 1.4.0
License GPL (>= 2)
Depends R (>= 3.4)
Imports stats
LinkingTo
Suggests BiocGenerics, RUnit, knitr, rtracklayer, utils
SystemRequirements
Enhances
URL https://github.com/taoshengxu/miRBaseConverter
BugReports https://github.com/taoshengxu/miRBaseConverter/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRBaseConverter_1.4.0.tar.gz
Windows Binary miRBaseConverter_1.4.0.zip
Mac OS X 10.11 (El Capitan) miRBaseConverter_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url http://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report Download Stats

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