nnNorm

Spatial and intensity based normalization of cDNA microarray data based on robust neural nets

This package allows to detect and correct for spatial and intensity biases with two-channel microarray data. The normalization method implemented in this package is based on robust neural networks fitting.

Author	Adi Laurentiu Tarca
Maintainer	Adi Laurentiu Tarca

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("nnNorm")

Documentation

nnNorm Tutorial	PDF	R Script
nnNormGuide.pdf	PDF	R Script
Reference Manual

Details

biocViews	Microarray , TwoChannel , Preprocessing
Depends	R , marray
Imports	graphics , grDevices , marray , methods , nnet , stats
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System Requirements
License	LGPL
URL	http://bioinformaticsprb.med.wayne.edu/tarca/
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Package Downloads

Package source	nnNorm_2.12.0.tar.gz
Windows 32-bit binary	nnNorm_2.12.0.zip
Windows 64-bit binary	nnNorm_2.12.0.zip
MacOS X 10.5 (Leopard) binary	nnNorm_2.12.0.tgz
Package Downloads Report	Downloads Stats