To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("piano")

In most cases, you don't need to download the package archive at all.

piano

Platform for integrative analysis of omics data

Bioconductor version: Release (3.1)

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

Citation (from within R, enter citation("piano")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("piano")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")

 

PDF R Script Piano - Platform for Integrative Analysis of Omics data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>=2)
Depends R (>= 2.14.0)
Imports BiocGenerics, Biobase, gplots, igraph, relations, marray
LinkingTo
Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall
SystemRequirements
Enhances
URL http://www.sysbio.se/piano
Depends On Me
Imports Me saps
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source piano_1.8.1.tar.gz
Windows Binary piano_1.8.1.zip
Mac OS X 10.6 (Snow Leopard) piano_1.8.1.tgz
Mac OS X 10.9 (Mavericks) piano_1.8.1.tgz
Browse/checkout source (username/password: readonly)
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